CX671326

Overview
NameCX671326
Unique NameCX671326
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length738
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX671326_ssr1 microsatellite CX671326_ssr1:1..10. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12912 contig Csv1_Contig12912:47..784. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671326 vs. ExPASy Swiss-Prot
Match: PDS5_YEAST (Sister chromatid cohesion protein PDS5 OS=Saccharomyces cerevisiae GN=PDS5 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.552e-16
Identity = 46/137 (33.58%), Postives = 81/137 (59.12%), Query Frame = 1
Query:  274 SVDELLPLLDQVESYLSRVEQSPTKSMQNALTPSQKALVADQLFGHSDVDVKVAVAACISEITRITAPEAPYEDDQMKEVFQLIVSSFENLSDKSSRSYAKRTSILETVAKVRSCVVMLDL-ECDALIIEMFQHFLE 681
            S +ELL  L  +   L+ ++Q  T      L   + ALV+ +L  H DV ++   A C+S+I R+ AP+APY D Q+ ++F+L++S FE L D+ +  + ++T ++  + + RS V++ DL   + L+IE+F  F +
Sbjct:   24 STNELLDRLKALHEELASLDQDNTDL--TGLDKYRDALVSRKLLKHKDVGIRAFTACCLSDILRLYAPDAPYTDAQLTDIFKLVLSQFEQLGDQENGYHIQQTYLITKLLEYRSIVLLADLPSSNNLLIELFHIFYD 158          
BLAST of CX671326 vs. ExPASy Swiss-Prot
Match: PD5AB_XENLA (Sister chromatid cohesion protein PDS5 homolog A-B OS=Xenopus laevis GN=pds5a-B PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.686e-12
Identity = 50/166 (30.12%), Postives = 83/166 (50.00%), Query Frame = 1
Query:  247 GNKLLEPPDSVDELLPLLDQVESYLSRVEQSPTKSMQNALTPSQKALVADQLFGHSDVDVKVAVAACISEITRITAPEAPY-EDDQMKEVFQLIVSSFENLSDKSSRSYAKRTSILETVAKVRSCVVMLDLE-CDALIIEMFQHFLEAIRDDHPDDVFSSMETIIS 738
            G K +    S DE++  L  V      ++Q   +  Q  L P    L +D    + + DV++ VA C+++I RI APEAPY   D++KE+F  I    + L D  S  + +   +LE +A V+S  +  +LE C+ + I++F+     I + H   V   M  ++S
Sbjct:   20 GVKEITDKISNDEVVKRLKMVVKTFMDMDQDSEEEKQQYL-PLALHLSSDFFLRNPNKDVRLLVACCLADIFRIYAPEAPYTSHDKLKEIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFELEDCNEIFIQLFKTLFSVINNSHNQKVQMHMLDLMS 184          
BLAST of CX671326 vs. ExPASy Swiss-Prot
Match: PD5BB_XENLA (Sister chromatid cohesion protein PDS5 homolog B-B OS=Xenopus laevis GN=pds5b-B PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.202e-12
Identity = 46/166 (27.71%), Postives = 82/166 (49.40%), Query Frame = 1
Query:  247 GNKLLEPPDSVDELLPLLDQVESYLSRVEQSPTKSMQNALTPSQKALVADQLFGHSDVDVKVAVAACISEITRITAPEAPY-EDDQMKEVFQLIVSSFENLSDKSSRSYAKRTSILETVAKVRSCVVMLDLE-CDALIIEMFQHFLEAIRDDHPDDVFSSMETIIS 738
            G K +    S +E++  L  V      ++Q   +  +  L  +   L +D    H D DV++ VA C+++I RI APEAPY   D++K++F  I    + L D  S  + +   +LE +A V+S  +  +LE C+ +  ++++     I + H   V   M  ++S
Sbjct:   18 GVKEISDKISKEEMVRRLKMVVKTFMDMDQDSEEEKEQYLNLALH-LASDFFLKHPDKDVRLLVACCLADIFRIYAPEAPYTSPDKLKDIFMFITRQLKGLEDTKSPQFNRYFYLLENIAWVKSYNICFELEDCNEIFTQLYRTLFSVINNGHNQKVHMHMVDLMS 182          
BLAST of CX671326 vs. ExPASy Swiss-Prot
Match: PDS5A_MOUSE (Sister chromatid cohesion protein PDS5 homolog A OS=Mus musculus GN=Pds5a PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.756e-12
Identity = 49/178 (27.53%), Postives = 86/178 (48.31%), Query Frame = 1
Query:  235 LMDAGNKLLEPPD--------SVDELLPLLDQVESYLSRVEQSPTKSMQNALTPSQKALVADQLFGHSDVDVKVAVAACISEITRITAPEAPY-EDDQMKEVFQLIVSSFENLSDKSSRSYAKRTSILETVAKVRSCVVMLDLE-CDALIIEMFQHFLEAIRDDHPDDVFSSMETIIS 738
            ++ A  K+  PP         + DE++  L  V      ++Q      Q  L P    L ++    + + DV++ VA C+++I RI APEAPY   D++K++F  I    + L D  S  + +   +LE +A V+S  +  +LE C+ + I++F+     I + H   V   M  ++S
Sbjct:   15 VVSADGKIAYPPGVKEITDKITTDEMIKRLQMVVKTFMDMDQDSEDEKQQYL-PLALHLASEFFLRNPNKDVRLLVACCLADIFRIYAPEAPYTSHDKLKDIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFELEDCNEIFIQLFRTLFSVINNSHNTKVQMHMLDLMS 191          
BLAST of CX671326 vs. ExPASy Swiss-Prot
Match: PD5AA_XENLA (Sister chromatid cohesion protein PDS5 homolog A-A OS=Xenopus laevis GN=pds5a-A PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.756e-12
Identity = 52/181 (28.73%), Postives = 90/181 (49.72%), Query Frame = 1
Query:  226 EQQLMDAGNKLLEPPD--------SVDELLPLLDQVESYLSRVEQSPTKSMQNALTPSQKALVADQLFGHSDVDVKVAVAACISEITRITAPEAPY-EDDQMKEVFQLIVSSFENLSDKSSRSYAKRTSILETVAKVRSCVVMLDLE-CDALIIEMFQHFLEAIRDDHPDDVFSSMETIIS 738
            + +L+D G  ++ PP         S DE++  L  V      ++Q   +  Q  L P    L ++    + + DV++ VA C+++I RI APEAPY   D++KE+F  I    + L D  S  + +   +LE +A V+S  +  +LE C+ + I++F+     I + H   V   M  ++S
Sbjct:    6 QPKLVD-GKSIIYPPGVKEITDKISNDEVVKRLKMVVKTYMDMDQDSEEEKQQYL-PLALHLSSEFFLRNPNKDVRLLVACCLADIFRIYAPEAPYTSHDKLKEIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFELEDCNEIFIQLFKTLFSVINNSHNQKVQMHMLDLMS 184          
BLAST of CX671326 vs. ExPASy Swiss-Prot
Match: PDS5A_RAT (Sister chromatid cohesion protein PDS5 homolog A OS=Rattus norvegicus GN=Pds5a PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.906e-12
Identity = 49/178 (27.53%), Postives = 86/178 (48.31%), Query Frame = 1
Query:  235 LMDAGNKLLEPPD--------SVDELLPLLDQVESYLSRVEQSPTKSMQNALTPSQKALVADQLFGHSDVDVKVAVAACISEITRITAPEAPY-EDDQMKEVFQLIVSSFENLSDKSSRSYAKRTSILETVAKVRSCVVMLDLE-CDALIIEMFQHFLEAIRDDHPDDVFSSMETIIS 738
            ++ A  K+  PP         + DE++  L  V      ++Q      Q  L P    L ++    + + DV++ VA C+++I RI APEAPY   D++K++F  I    + L D  S  + +   +LE +A V+S  +  +LE C+ + I++F+     I + H   V   M  ++S
Sbjct:   15 VVSADGKIAYPPGVKEITDKITTDEMIKRLKMVVKTFMDMDQDSEDEKQQYL-PLALHLASEFFLRNPNKDVRLLVACCLADIFRIYAPEAPYTSHDKLKDIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFELEDCNEIFIQLFRTLFSVINNSHNKKVQMHMLDLMS 191          
BLAST of CX671326 vs. ExPASy Swiss-Prot
Match: PDS5A_HUMAN (Sister chromatid cohesion protein PDS5 homolog A OS=Homo sapiens GN=PDS5A PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.906e-12
Identity = 49/178 (27.53%), Postives = 86/178 (48.31%), Query Frame = 1
Query:  235 LMDAGNKLLEPPD--------SVDELLPLLDQVESYLSRVEQSPTKSMQNALTPSQKALVADQLFGHSDVDVKVAVAACISEITRITAPEAPY-EDDQMKEVFQLIVSSFENLSDKSSRSYAKRTSILETVAKVRSCVVMLDLE-CDALIIEMFQHFLEAIRDDHPDDVFSSMETIIS 738
            ++ A  K+  PP         + DE++  L  V      ++Q      Q  L P    L ++    + + DV++ VA C+++I RI APEAPY   D++K++F  I    + L D  S  + +   +LE +A V+S  +  +LE C+ + I++F+     I + H   V   M  ++S
Sbjct:   16 VVSADGKIAYPPGVKEITDKITTDEMIKRLKMVVKTFMDMDQDSEDEKQQYL-PLALHLASEFFLRNPNKDVRLLVACCLADIFRIYAPEAPYTSHDKLKDIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFELEDCNEIFIQLFRTLFSVINNSHNKKVQMHMLDLMS 192          
BLAST of CX671326 vs. ExPASy Swiss-Prot
Match: PDS5_SCHPO (Sister chromatid cohesion protein pds5 OS=Schizosaccharomyces pombe GN=pds5 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.427e-11
Identity = 42/158 (26.58%), Postives = 84/158 (53.16%), Query Frame = 1
Query:  268 PDSVDELLPLLDQVESYLSRVEQSPTKSMQNALTPSQKALVADQLFGHSDVDVKVAVAACISEITRITAPEAPYEDDQMKEVFQLIVSSFENLSDKSSRSYAKRTSILETVAKVRSCVVMLDL-ECDALIIEMFQHFLEAIRDDHPDDVFSSMETIIS 738
            P +  E+L  L  +   L+ + Q      ++++ P  ++LV + L  H D  ++     CI E+ R+ AP+AP+   Q++++FQ+I+     L ++ S  Y +   ILE+++ V+S V+++DL   +  ++ +F+ F +  R     +V   M  II+
Sbjct:   17 PLTTSEILKRLRDLLGELTSLSQDTID--RDSVLPVARSLVNNNLLHHKDKGIRSYTLCCIVELLRLCAPDAPFTLSQLEDIFQVILKILSGLMNQESTYYPQIYEILESLSNVKSAVLIVDLPNAEEFLVNIFRLFFDLARKGTTKNVEFYMLDIIN 172          
BLAST of CX671326 vs. ExPASy Swiss-Prot
Match: PDS5A_CHICK (Sister chromatid cohesion protein PDS5 homolog A OS=Gallus gallus GN=PDS5A PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.864e-11
Identity = 45/155 (29.03%), Postives = 78/155 (50.32%), Query Frame = 1
Query:  280 DELLPLLDQVESYLSRVEQSPTKSMQNALTPSQKALVADQLFGHSDVDVKVAVAACISEITRITAPEAPY-EDDQMKEVFQLIVSSFENLSDKSSRSYAKRTSILETVAKVRSCVVMLDLE-CDALIIEMFQHFLEAIRDDHPDDVFSSMETIIS 738
            DE++  L  V      ++Q      Q  L P    L ++    + + DV++ VA C+++I RI APEAPY   D++K++F  I    + L D  S  + +   +LE +A V+S  +  +LE C+ + I++F+     I + H   V   M  ++S
Sbjct:   33 DEVVKRLKMVVKTFMDMDQDSEDEKQQYL-PLALHLASEFFLRNPNKDVRLLVACCLADIFRIYAPEAPYTSHDKLKDIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFELEDCNEIFIQLFRTLFSVINNSHNQKVQMHMLDLMS 186          
BLAST of CX671326 vs. ExPASy Swiss-Prot
Match: PDS5A_DANRE (Sister chromatid cohesion protein PDS5 homolog A OS=Danio rerio GN=pds5a PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.435e-11
Identity = 48/166 (28.92%), Postives = 83/166 (50.00%), Query Frame = 1
Query:  247 GNKLLEPPDSVDELLPLLDQVESYLSRVEQSPTKSMQNALTPSQKALVADQLFGHSDVDVKVAVAACISEITRITAPEAPY-EDDQMKEVFQLIVSSFENLSDKSSRSYAKRTSILETVAKVRSCVVMLDLE-CDALIIEMFQHFLEAIRDDHPDDVFSSMETIIS 738
            G K +    S DE++  L  V      ++Q   +  Q  L  +   L ++    + + DV++ VA C+++I RI APEAPY   D++KE+F  I    + L D  S  + +   +LE +A V+S  +  +LE C+ + I++F+     I + H   V   M  ++S
Sbjct:   23 GVKEITDKISNDEVVKRLKLVVKTYMDMDQDSEEEKQQYLALALH-LASEFFLRNPNKDVRLLVACCLADIFRIYAPEAPYTSHDKLKEIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFELEDCNEIFIQLFKTLFSVINNSHNQKVQMHMLDLMS 187          
The following BLAST results are available for this feature:
BLAST of CX671326 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
PDS5_YEAST9.552e-1633.58Sister chromatid cohesion protein PDS5 OS=Saccharo... [more]
PD5AB_XENLA1.686e-1230.12Sister chromatid cohesion protein PDS5 homolog A-B... [more]
PD5BB_XENLA2.202e-1227.71Sister chromatid cohesion protein PDS5 homolog B-B... [more]
PDS5A_MOUSE3.756e-1227.53Sister chromatid cohesion protein PDS5 homolog A O... [more]
PD5AA_XENLA3.756e-1228.73Sister chromatid cohesion protein PDS5 homolog A-A... [more]
PDS5A_RAT4.906e-1227.53Sister chromatid cohesion protein PDS5 homolog A O... [more]
PDS5A_HUMAN4.906e-1227.53Sister chromatid cohesion protein PDS5 homolog A O... [more]
PDS5_SCHPO1.427e-1126.58Sister chromatid cohesion protein pds5 OS=Schizosa... [more]
PDS5A_CHICK1.864e-1129.03Sister chromatid cohesion protein PDS5 homolog A O... [more]
PDS5A_DANRE2.435e-1128.92Sister chromatid cohesion protein PDS5 homolog A O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_10D08_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-10D08-G16-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671326 ID=CX671326; Name=CX671326; organism=Citrus sinensis; type=EST; length=738bp
CTCTCTCTCTCGCTCTTTCTAAGCAAAAACAAAGACGAGAGAAACCCTAA
CTTTCTCTCTCTAAATTTCTCGTTCGAATCTCGCTTTTGAATCTTCAATT
CTTTGTTTCCGTGTCGTTTTCTAGGCTTTCAATGGTGTGAAATCGAAGTT
CGAGCGTCTGAAATCGAAGGATCTATTGGTGTTTTCGTACAGAGAGAAAT
TATGGCTTCGTCTGATAAGGAGCTCGAGCAACAGCTCATGGACGCTGGAA
ATAAGCTTCTAGAACCTCCAGATTCCGTTGATGAACTCCTTCCTCTTCTT
GATCAAGTTGAGAGTTATCTGTCTAGGGTGGAACAGTCACCTACCAAGTC
AATGCAAAATGCACTCACTCCCTCGCAGAAAGCATTGGTTGCGGACCAAC
TTTTTGGGCATTCAGATGTTGATGTGAAAGTTGCAGTGGCTGCATGCATC
AGTGAGATAACAAGAATAACTGCACCAGAAGCTCCTTATGAGGATGACCA
GATGAAGGAAGTCTTTCAATTGATTGTATCATCTTTTGAAAATTTGTCTG
ACAAATCAAGCCGCTCGTATGCTAAGAGAACCTCAATCCTTGAAACTGTT
GCCAAGGTCAGGTCGTGTGTTGTTATGTTGGATCTTGAATGTGATGCACT
GATTATCGAGATGTTCCAGCATTTTCTTGAGGCAATAAGGGATGACCACC
CTGACGATGTCTTTTCGTCCATGGAGACAATTATAAGT
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