CX671326
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX671326 vs. ExPASy Swiss-Prot
Match: PDS5_YEAST (Sister chromatid cohesion protein PDS5 OS=Saccharomyces cerevisiae GN=PDS5 PE=1 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 9.552e-16 Identity = 46/137 (33.58%), Postives = 81/137 (59.12%), Query Frame = 1 Query: 274 SVDELLPLLDQVESYLSRVEQSPTKSMQNALTPSQKALVADQLFGHSDVDVKVAVAACISEITRITAPEAPYEDDQMKEVFQLIVSSFENLSDKSSRSYAKRTSILETVAKVRSCVVMLDL-ECDALIIEMFQHFLE 681 S +ELL L + L+ ++Q T L + ALV+ +L H DV ++ A C+S+I R+ AP+APY D Q+ ++F+L++S FE L D+ + + ++T ++ + + RS V++ DL + L+IE+F F + Sbjct: 24 STNELLDRLKALHEELASLDQDNTDL--TGLDKYRDALVSRKLLKHKDVGIRAFTACCLSDILRLYAPDAPYTDAQLTDIFKLVLSQFEQLGDQENGYHIQQTYLITKLLEYRSIVLLADLPSSNNLLIELFHIFYD 158
BLAST of CX671326 vs. ExPASy Swiss-Prot
Match: PD5AB_XENLA (Sister chromatid cohesion protein PDS5 homolog A-B OS=Xenopus laevis GN=pds5a-B PE=1 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.686e-12 Identity = 50/166 (30.12%), Postives = 83/166 (50.00%), Query Frame = 1 Query: 247 GNKLLEPPDSVDELLPLLDQVESYLSRVEQSPTKSMQNALTPSQKALVADQLFGHSDVDVKVAVAACISEITRITAPEAPY-EDDQMKEVFQLIVSSFENLSDKSSRSYAKRTSILETVAKVRSCVVMLDLE-CDALIIEMFQHFLEAIRDDHPDDVFSSMETIIS 738 G K + S DE++ L V ++Q + Q L P L +D + + DV++ VA C+++I RI APEAPY D++KE+F I + L D S + + +LE +A V+S + +LE C+ + I++F+ I + H V M ++S Sbjct: 20 GVKEITDKISNDEVVKRLKMVVKTFMDMDQDSEEEKQQYL-PLALHLSSDFFLRNPNKDVRLLVACCLADIFRIYAPEAPYTSHDKLKEIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFELEDCNEIFIQLFKTLFSVINNSHNQKVQMHMLDLMS 184
BLAST of CX671326 vs. ExPASy Swiss-Prot
Match: PD5BB_XENLA (Sister chromatid cohesion protein PDS5 homolog B-B OS=Xenopus laevis GN=pds5b-B PE=1 SV=2) HSP 1 Score: 72.7886 bits (177), Expect = 2.202e-12 Identity = 46/166 (27.71%), Postives = 82/166 (49.40%), Query Frame = 1 Query: 247 GNKLLEPPDSVDELLPLLDQVESYLSRVEQSPTKSMQNALTPSQKALVADQLFGHSDVDVKVAVAACISEITRITAPEAPY-EDDQMKEVFQLIVSSFENLSDKSSRSYAKRTSILETVAKVRSCVVMLDLE-CDALIIEMFQHFLEAIRDDHPDDVFSSMETIIS 738 G K + S +E++ L V ++Q + + L + L +D H D DV++ VA C+++I RI APEAPY D++K++F I + L D S + + +LE +A V+S + +LE C+ + ++++ I + H V M ++S Sbjct: 18 GVKEISDKISKEEMVRRLKMVVKTFMDMDQDSEEEKEQYLNLALH-LASDFFLKHPDKDVRLLVACCLADIFRIYAPEAPYTSPDKLKDIFMFITRQLKGLEDTKSPQFNRYFYLLENIAWVKSYNICFELEDCNEIFTQLYRTLFSVINNGHNQKVHMHMVDLMS 182
BLAST of CX671326 vs. ExPASy Swiss-Prot
Match: PDS5A_MOUSE (Sister chromatid cohesion protein PDS5 homolog A OS=Mus musculus GN=Pds5a PE=2 SV=2) HSP 1 Score: 72.0182 bits (175), Expect = 3.756e-12 Identity = 49/178 (27.53%), Postives = 86/178 (48.31%), Query Frame = 1 Query: 235 LMDAGNKLLEPPD--------SVDELLPLLDQVESYLSRVEQSPTKSMQNALTPSQKALVADQLFGHSDVDVKVAVAACISEITRITAPEAPY-EDDQMKEVFQLIVSSFENLSDKSSRSYAKRTSILETVAKVRSCVVMLDLE-CDALIIEMFQHFLEAIRDDHPDDVFSSMETIIS 738 ++ A K+ PP + DE++ L V ++Q Q L P L ++ + + DV++ VA C+++I RI APEAPY D++K++F I + L D S + + +LE +A V+S + +LE C+ + I++F+ I + H V M ++S Sbjct: 15 VVSADGKIAYPPGVKEITDKITTDEMIKRLQMVVKTFMDMDQDSEDEKQQYL-PLALHLASEFFLRNPNKDVRLLVACCLADIFRIYAPEAPYTSHDKLKDIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFELEDCNEIFIQLFRTLFSVINNSHNTKVQMHMLDLMS 191
BLAST of CX671326 vs. ExPASy Swiss-Prot
Match: PD5AA_XENLA (Sister chromatid cohesion protein PDS5 homolog A-A OS=Xenopus laevis GN=pds5a-A PE=1 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.756e-12 Identity = 52/181 (28.73%), Postives = 90/181 (49.72%), Query Frame = 1 Query: 226 EQQLMDAGNKLLEPPD--------SVDELLPLLDQVESYLSRVEQSPTKSMQNALTPSQKALVADQLFGHSDVDVKVAVAACISEITRITAPEAPY-EDDQMKEVFQLIVSSFENLSDKSSRSYAKRTSILETVAKVRSCVVMLDLE-CDALIIEMFQHFLEAIRDDHPDDVFSSMETIIS 738 + +L+D G ++ PP S DE++ L V ++Q + Q L P L ++ + + DV++ VA C+++I RI APEAPY D++KE+F I + L D S + + +LE +A V+S + +LE C+ + I++F+ I + H V M ++S Sbjct: 6 QPKLVD-GKSIIYPPGVKEITDKISNDEVVKRLKMVVKTYMDMDQDSEEEKQQYL-PLALHLSSEFFLRNPNKDVRLLVACCLADIFRIYAPEAPYTSHDKLKEIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFELEDCNEIFIQLFKTLFSVINNSHNQKVQMHMLDLMS 184
BLAST of CX671326 vs. ExPASy Swiss-Prot
Match: PDS5A_RAT (Sister chromatid cohesion protein PDS5 homolog A OS=Rattus norvegicus GN=Pds5a PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.906e-12 Identity = 49/178 (27.53%), Postives = 86/178 (48.31%), Query Frame = 1 Query: 235 LMDAGNKLLEPPD--------SVDELLPLLDQVESYLSRVEQSPTKSMQNALTPSQKALVADQLFGHSDVDVKVAVAACISEITRITAPEAPY-EDDQMKEVFQLIVSSFENLSDKSSRSYAKRTSILETVAKVRSCVVMLDLE-CDALIIEMFQHFLEAIRDDHPDDVFSSMETIIS 738 ++ A K+ PP + DE++ L V ++Q Q L P L ++ + + DV++ VA C+++I RI APEAPY D++K++F I + L D S + + +LE +A V+S + +LE C+ + I++F+ I + H V M ++S Sbjct: 15 VVSADGKIAYPPGVKEITDKITTDEMIKRLKMVVKTFMDMDQDSEDEKQQYL-PLALHLASEFFLRNPNKDVRLLVACCLADIFRIYAPEAPYTSHDKLKDIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFELEDCNEIFIQLFRTLFSVINNSHNKKVQMHMLDLMS 191
BLAST of CX671326 vs. ExPASy Swiss-Prot
Match: PDS5A_HUMAN (Sister chromatid cohesion protein PDS5 homolog A OS=Homo sapiens GN=PDS5A PE=1 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.906e-12 Identity = 49/178 (27.53%), Postives = 86/178 (48.31%), Query Frame = 1 Query: 235 LMDAGNKLLEPPD--------SVDELLPLLDQVESYLSRVEQSPTKSMQNALTPSQKALVADQLFGHSDVDVKVAVAACISEITRITAPEAPY-EDDQMKEVFQLIVSSFENLSDKSSRSYAKRTSILETVAKVRSCVVMLDLE-CDALIIEMFQHFLEAIRDDHPDDVFSSMETIIS 738 ++ A K+ PP + DE++ L V ++Q Q L P L ++ + + DV++ VA C+++I RI APEAPY D++K++F I + L D S + + +LE +A V+S + +LE C+ + I++F+ I + H V M ++S Sbjct: 16 VVSADGKIAYPPGVKEITDKITTDEMIKRLKMVVKTFMDMDQDSEDEKQQYL-PLALHLASEFFLRNPNKDVRLLVACCLADIFRIYAPEAPYTSHDKLKDIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFELEDCNEIFIQLFRTLFSVINNSHNKKVQMHMLDLMS 192
BLAST of CX671326 vs. ExPASy Swiss-Prot
Match: PDS5_SCHPO (Sister chromatid cohesion protein pds5 OS=Schizosaccharomyces pombe GN=pds5 PE=1 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.427e-11 Identity = 42/158 (26.58%), Postives = 84/158 (53.16%), Query Frame = 1 Query: 268 PDSVDELLPLLDQVESYLSRVEQSPTKSMQNALTPSQKALVADQLFGHSDVDVKVAVAACISEITRITAPEAPYEDDQMKEVFQLIVSSFENLSDKSSRSYAKRTSILETVAKVRSCVVMLDL-ECDALIIEMFQHFLEAIRDDHPDDVFSSMETIIS 738 P + E+L L + L+ + Q ++++ P ++LV + L H D ++ CI E+ R+ AP+AP+ Q++++FQ+I+ L ++ S Y + ILE+++ V+S V+++DL + ++ +F+ F + R +V M II+ Sbjct: 17 PLTTSEILKRLRDLLGELTSLSQDTID--RDSVLPVARSLVNNNLLHHKDKGIRSYTLCCIVELLRLCAPDAPFTLSQLEDIFQVILKILSGLMNQESTYYPQIYEILESLSNVKSAVLIVDLPNAEEFLVNIFRLFFDLARKGTTKNVEFYMLDIIN 172
BLAST of CX671326 vs. ExPASy Swiss-Prot
Match: PDS5A_CHICK (Sister chromatid cohesion protein PDS5 homolog A OS=Gallus gallus GN=PDS5A PE=2 SV=2) HSP 1 Score: 69.707 bits (169), Expect = 1.864e-11 Identity = 45/155 (29.03%), Postives = 78/155 (50.32%), Query Frame = 1 Query: 280 DELLPLLDQVESYLSRVEQSPTKSMQNALTPSQKALVADQLFGHSDVDVKVAVAACISEITRITAPEAPY-EDDQMKEVFQLIVSSFENLSDKSSRSYAKRTSILETVAKVRSCVVMLDLE-CDALIIEMFQHFLEAIRDDHPDDVFSSMETIIS 738 DE++ L V ++Q Q L P L ++ + + DV++ VA C+++I RI APEAPY D++K++F I + L D S + + +LE +A V+S + +LE C+ + I++F+ I + H V M ++S Sbjct: 33 DEVVKRLKMVVKTFMDMDQDSEDEKQQYL-PLALHLASEFFLRNPNKDVRLLVACCLADIFRIYAPEAPYTSHDKLKDIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFELEDCNEIFIQLFRTLFSVINNSHNQKVQMHMLDLMS 186
BLAST of CX671326 vs. ExPASy Swiss-Prot
Match: PDS5A_DANRE (Sister chromatid cohesion protein PDS5 homolog A OS=Danio rerio GN=pds5a PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.435e-11 Identity = 48/166 (28.92%), Postives = 83/166 (50.00%), Query Frame = 1 Query: 247 GNKLLEPPDSVDELLPLLDQVESYLSRVEQSPTKSMQNALTPSQKALVADQLFGHSDVDVKVAVAACISEITRITAPEAPY-EDDQMKEVFQLIVSSFENLSDKSSRSYAKRTSILETVAKVRSCVVMLDLE-CDALIIEMFQHFLEAIRDDHPDDVFSSMETIIS 738 G K + S DE++ L V ++Q + Q L + L ++ + + DV++ VA C+++I RI APEAPY D++KE+F I + L D S + + +LE +A V+S + +LE C+ + I++F+ I + H V M ++S Sbjct: 23 GVKEITDKISNDEVVKRLKLVVKTYMDMDQDSEEEKQQYLALALH-LASEFFLRNPNKDVRLLVACCLADIFRIYAPEAPYTSHDKLKEIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFELEDCNEIFIQLFKTLFSVINNSHNQKVQMHMLDLMS 187 The following BLAST results are available for this feature:
BLAST of CX671326 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
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Sequences
The
following sequences are available for this feature:
EST sequence >CX671326 ID=CX671326; Name=CX671326; organism=Citrus sinensis; type=EST; length=738bpback to top |