CX671323

Overview
NameCX671323
Unique NameCX671323
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length724
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671323 vs. ExPASy Swiss-Prot
Match: 3MG_ARATH (DNA-3-methyladenine glycosylase OS=Arabidopsis thaliana GN=MAG PE=2 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 4.167e-69
Identity = 123/152 (80.92%), Postives = 138/152 (90.79%), Query Frame = 3
Query:  267 SFENMTILPHHFFQIDALDLAPRLLGKFLRRDDVLLQITEVEAYRPNDSACHGRFGITARTAPVFGPGGLAYVYLCYGLHTMLNVVADKEGVGAAVLIRSCAPVSGLKTIQQRRAQLTEKPVLLTGPGKVGQALGISTEWSNHPLYMPGGLE 722
            S   M ++P  FFQIDALDLAPRLLGKF+RRD+V+L+ITEVEAYRPNDSACHGRFG+T RTAPVFGPGG AYVYLCYGLH MLN+VADKEGVGAAVLIRSC+PVSG++TIQ+RR   T+KPVLL GPGKVGQALG+STEWS+HPLY PGGLE
Sbjct:   52 SESEMKLMPPEFFQIDALDLAPRLLGKFMRRDNVVLRITEVEAYRPNDSACHGRFGVTPRTAPVFGPGGHAYVYLCYGLHMMLNIVADKEGVGAAVLIRSCSPVSGMETIQERRGLKTDKPVLLNGPGKVGQALGLSTEWSHHPLYSPGGLE 203          
BLAST of CX671323 vs. ExPASy Swiss-Prot
Match: 3MGH_NITOC (Putative 3-methyladenine DNA glycosylase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=Noc_0079 PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.801e-41
Identity = 86/147 (58.50%), Postives = 107/147 (72.79%), Query Frame = 3
Query:  285 ILPHHFFQIDALDLAPRLLGKFLRRDDVLLQITEVEAYR-PNDSACHGRFGITARTAPVFGPGGLAYVYLCYGLHTMLNVVADKEGVGAAVLIRSCAPVSGLKTIQQRRAQLTEKPVLLTGPGKVGQALGISTEWSNHPLYMPGGLE 722
            +LP  F+  DAL++A  LLG  L R+ V+L+ITEVEAYR P D+A HGR G T R  P++GP G  Y+YLCYG+H +LN+V  +EG  AAVLIR+C PV+GL  IQ+RR     KP LLTGPGKVG ALG+   W++HPLY PGGLE
Sbjct:    4 LLPPRFYARDALEVAADLLGASLCREQVVLRITEVEAYRWPEDTANHGRHGQTLRNEPLWGPPGRVYLYLCYGIHHLLNLVTGEEGQAAAVLIRACEPVAGLDLIQRRRRGKI-KPGLLTGPGKVGAALGLDLSWNHHPLYEPGGLE 149          
BLAST of CX671323 vs. ExPASy Swiss-Prot
Match: 3MGH_CHLP8 (Putative 3-methyladenine DNA glycosylase OS=Chlorobaculum parvum (strain NCIB 8327) GN=Cpar_0350 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.552e-23
Identity = 62/141 (43.97%), Postives = 86/141 (60.99%), Query Frame = 3
Query:  279 MTILPHHFFQIDALDLAPRLLGK-FLRRDDVLL----QITEVEAYR-PNDSACHGRFGITARTAPVFGPGGLAYVYLCYGLHTMLNVVADKEGVGAAVLIRSCAPVSGLKTIQQRRAQLTEKPVLLTGPGKVGQALGISTE 683
            M  L   F+Q   L+LA RLLGK F+R +D  +    +I E EAY    D ACH   G+T R   +FGP G  Y+Y  YG H M+N+V+++EG   AVL+R+  P+ G+  +Q+RR    E+  L++GPGK+ QALGI  E
Sbjct:    1 MKRLGAEFYQAPTLELAERLLGKIFVRCEDTGMVTKARIVETEAYLGEGDEACHAWRGMTNRNRAMFGPPGHLYIYFTYGCHYMINIVSEQEGTAGAVLLRAMEPLEGIDRMQERRGTADER-ALMSGPGKLAQALGIGPE 140          
BLAST of CX671323 vs. ExPASy Swiss-Prot
Match: 3MGH_RHOP2 (Putative 3-methyladenine DNA glycosylase OS=Rhodopseudomonas palustris (strain HaA2) GN=RPB_2889 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.896e-23
Identity = 63/141 (44.68%), Postives = 81/141 (57.45%), Query Frame = 3
Query:  288 LPHHFFQIDALDLAPRLLGKFLRRDDVLLQITEVEAYRPNDSACHGRFGITARTAPVFGPGGLAYVYLCYGLHTMLNVVADKEGVGAAVLIRSCAPVSGLKTIQQRRAQLTEKPVLLTGPGKVGQALGISTEWSNHPLYMP 710
            L   FF     ++AP L+G  L  + V   I EVEAY   D A H   G TAR A +FGP G AYVY  YG+H  +NVV + EG  +AVLIR+  P  G++ ++ RR  L +   L +GPGK+ QALGIS   +  PL  P
Sbjct:   18 LRRRFFARSVHEVAPELIGATLLVEGVGGVIVEVEAYHHTDPAAHSYGGQTARNAVMFGPPGFAYVYRSYGIHWCVNVVCEAEGSASAVLIRALQPTHGVEAMRARRG-LDDARSLCSGPGKLAQALGISIAHNGLPLDAP 157          
BLAST of CX671323 vs. ExPASy Swiss-Prot
Match: 3MGH_RUBXD (Putative 3-methyladenine DNA glycosylase OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=Rxyl_1309 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.314e-22
Identity = 53/114 (46.49%), Postives = 72/114 (63.16%), Query Frame = 3
Query:  378 ITEVEAYRPNDSACHGRFGITARTAPVFGPGGLAYVYLCYGLHTMLNVVADKEGVGAAVLIRSCAPVSGLKTIQQRRAQLTEKPVLLTGPGKVGQALGISTEWSNHPLYMPGGL 719
            I E EAYRP D ACH   G + R   +FG  GLAYVYL YG+H +LN V + EGVG+AVLIRS AP+ G+  +++RR +  +   L  GPG++ ++LG+      H L +  GL
Sbjct:   21 IVETEAYRPEDPACHAYRGPSMRNRTLFGGPGLAYVYLSYGMHRLLNAVCEGEGVGSAVLIRSLAPLEGVPLMRRRRGRAAD---LCNGPGRLAESLGVGLSLDGHDLTLGEGL 131          
BLAST of CX671323 vs. ExPASy Swiss-Prot
Match: 3MGH_METMJ (Putative 3-methyladenine DNA glycosylase OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=Memar_0903 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.314e-22
Identity = 65/136 (47.79%), Postives = 83/136 (61.03%), Query Frame = 3
Query:  288 LPHHFFQIDALDLAPRLLGKFL-RRDDVLL--QITEVEAYRPNDSACHGRFGITARTAPVFGPGGLAYVYLCYGLHTMLNVVADKEGVGAAVLIRSCAPVSGLKTIQQRRAQLTEKPV-LLTGPGKVGQALGISTE 683
            LP  F++ D + +A  LLG  L  R++V    +I EVEAY   D A H   G T R   +FGP G AYVY  YGLHT +NVV   EG G AVL+R+  PV GL  +Q RR   T+ P+ L +GPGK+ QALGI+ +
Sbjct:    3 LPAAFYERDTVTVAKDLLGCLLVHREEVTTAGRIVEVEAYLRGDPAAHSYRGTTKRNRVMFGPAGHAYVYRIYGLHTCVNVVTGTEGAGEAVLVRALEPVVGLDLMQARRG--TDDPLSLASGPGKLTQALGITMD 136          
BLAST of CX671323 vs. ExPASy Swiss-Prot
Match: 3MGH_NITHX (Putative 3-methyladenine DNA glycosylase OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=Nham_1830 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.112e-21
Identity = 61/141 (43.26%), Postives = 80/141 (56.74%), Query Frame = 3
Query:  288 LPHHFFQIDALDLAPRLLGKFLRRDDVLLQITEVEAYRPNDSACHGRFGITARTAPVFGPGGLAYVYLCYGLHTMLNVVADKEGVGAAVLIRSCAPVSGLKTIQQRRAQLTEKPVLLTGPGKVGQALGISTEWSNHPLYMP 710
            L   FF     D+AP L+G  L  D V   I EVEAY   + A H   G T R   +FGP G  YVY  YG+H  +N V +K+G  AAVLIR+  P  G+  +++RR +L E+ +L +GPGK+  ALGIS   +  PL  P
Sbjct:   19 LTRSFFGRSVHDVAPDLIGATLLVDGVGGIIVEVEAYHHTEPAAHSHRGPTPRNMVMFGPPGFTYVYRSYGIHWCMNFVCEKDGCAAAVLIRALQPTHGIPAMRRRR-RLHEERLLCSGPGKLCAALGISIAHNALPLDAP 158          
BLAST of CX671323 vs. ExPASy Swiss-Prot
Match: 3MGH_NITWN (Putative 3-methyladenine DNA glycosylase OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=Nwi_1438 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.477e-21
Identity = 61/141 (43.26%), Postives = 80/141 (56.74%), Query Frame = 3
Query:  288 LPHHFFQIDALDLAPRLLGKFLRRDDVLLQITEVEAYRPNDSACHGRFGITARTAPVFGPGGLAYVYLCYGLHTMLNVVADKEGVGAAVLIRSCAPVSGLKTIQQRRAQLTEKPVLLTGPGKVGQALGISTEWSNHPLYMP 710
            L   FF     D+AP L+G  L  D V   I EVEAY   + A H   G T R   +FGP G AYVY  YG+H  +N V + +G  AAVLIR+  P  G+  +++RR  L E+ +L +GPG++ QALGIS   +  PL  P
Sbjct:   21 LTRAFFGRSVHDVAPDLIGATLLVDGVGGIIVEVEAYHHTEPAAHSHRGPTPRNMVMFGPPGFAYVYRSYGIHWCVNFVCEMDGSAAAVLIRALQPTHGIPAMRRRRG-LHEERLLCSGPGRLCQALGISIAHNALPLDAP 160          
BLAST of CX671323 vs. ExPASy Swiss-Prot
Match: 3MGH_CHLTE (Putative 3-methyladenine DNA glycosylase OS=Chlorobium tepidum GN=CT1853 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.208e-21
Identity = 53/131 (40.46%), Postives = 83/131 (63.36%), Query Frame = 3
Query:  300 FFQIDALDLAPRLLGKFLRRDDVLLQIT-----EVEAYRPN-DSACHGRFGITARTAPVFGPGGLAYVYLCYGLHTMLNVVADKEGVGAAVLIRSCAPVSGLKTIQQRRAQLTEKPVLLTGPGKVGQALGI 674
            F+Q+  + LA RLLGK     +V  ++T     E EAY  + D ACH   G+T R   +FGP G  Y+Y  YG H + N+V++++G+  AVL+R+  P+ G++ +Q+RR   T++  L++GPGK+ QALG+
Sbjct:    8 FYQMPTILLAERLLGKIFVHHEVSGRVTKGRIVETEAYLGDGDEACHAWRGMTERNHVMFGPPGHLYIYFSYGCHYLANIVSEQKGIAGAVLLRAMEPIEGIEWMQERRG-TTDERALMSGPGKLTQALGL 137          
BLAST of CX671323 vs. ExPASy Swiss-Prot
Match: 3MGH_RHOPS (Putative 3-methyladenine DNA glycosylase OS=Rhodopseudomonas palustris (strain BisB5) GN=RPD_2583 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.414e-21
Identity = 59/139 (42.45%), Postives = 78/139 (56.12%), Query Frame = 3
Query:  285 ILPHHFFQIDALDLAPRLLGKFLRRDDVLLQITEVEAYRPNDSACHGRFGITARTAPVFGPGGLAYVYLCYGLHTMLNVVADKEGVGAAVLIRSCAPVSGLKTIQQRRAQLTEKPVLLTGPGKVGQALGISTEWSNHPL 701
            +L   FF     ++AP L+G  L    V   I EVEAY   D A H   G T R   +FGP G AYVY  YG+H  +N V + EG  +AVLIR+ AP  GL  +++ R  L ++  L +GPGK+ QALGI+   +  PL
Sbjct:   18 LLSRRFFARSVHEVAPELIGATLLVAGVGGLIVEVEAYHHTDPAAHSYGGETPRNRVMFGPPGFAYVYRSYGIHWCVNFVCEAEGSASAVLIRALAPTHGLGVMRKHRG-LDDERSLCSGPGKLTQALGITIAHNGAPL 155          
The following BLAST results are available for this feature:
BLAST of CX671323 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
3MG_ARATH4.167e-6980.92DNA-3-methyladenine glycosylase OS=Arabidopsis tha... [more]
3MGH_NITOC4.801e-4158.50Putative 3-methyladenine DNA glycosylase OS=Nitros... [more]
3MGH_CHLP81.552e-2343.97Putative 3-methyladenine DNA glycosylase OS=Chloro... [more]
3MGH_RHOP25.896e-2344.68Putative 3-methyladenine DNA glycosylase OS=Rhodop... [more]
3MGH_RUBXD1.314e-2246.49Putative 3-methyladenine DNA glycosylase OS=Rubrob... [more]
3MGH_METMJ1.314e-2247.79Putative 3-methyladenine DNA glycosylase OS=Methan... [more]
3MGH_NITHX1.112e-2143.26Putative 3-methyladenine DNA glycosylase OS=Nitrob... [more]
3MGH_NITWN2.477e-2143.26Putative 3-methyladenine DNA glycosylase OS=Nitrob... [more]
3MGH_CHLTE7.208e-2140.46Putative 3-methyladenine DNA glycosylase OS=Chloro... [more]
3MGH_RHOPS9.414e-2142.45Putative 3-methyladenine DNA glycosylase OS=Rhodop... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_10D06_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-10D06-G12-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671323 ID=CX671323; Name=CX671323; organism=Citrus sinensis; type=EST; length=724bp
CACGAGGGTTTGTCAAAGACCGAAGCCGCAAAGCCAGGAGTTGATCAACC
AAAAACAGAGCCTGGATGAAGCAAACTCAACGATTCAAACGAGTCGGAGT
CGCAATCACCAAAACCAAGAAACCCATTTCGAAAACTACCGAGTCCACCA
ATGACGACTCCATAATTCGGACGGGTCACCGCCCCAAATCAGTGACCGTC
GAGATCAAGTCCAAATCCTCCCCTAAACCCAAAATTGCTCCATCAGTTCC
CATCTCTGCAGGCCCATCATTTGAGAATATGACAATCCTGCCTCATCACT
TCTTTCAAATCGATGCTCTTGATCTTGCCCCTCGTTTGCTTGGCAAGTTT
CTTAGGAGAGATGATGTTCTTCTTCAAATTACTGAGGTAGAAGCTTACAG
ACCGAATGATTCAGCATGCCATGGTAGATTTGGAATTACAGCAAGAACAG
CCCCGGTTTTTGGACCCGGAGGGCTTGCGTATGTCTATCTATGCTATGGT
CTCCATACAATGCTTAATGTTGTAGCTGACAAGGAAGGAGTTGGGGCTGC
AGTTCTAATACGATCTTGTGCTCCTGTCAGTGGGCTGAAGACCATTCAGC
AGCGTCGTGCACAATTAACTGAGAAACCTGTTCTTCTCACTGGACCAGGA
AAGGTTGGTCAAGCACTGGGAATTTCAACAGAATGGTCAAACCACCCTCT
TTACATGCCTGGTGGTTTAGAAAT
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