CX671307

Overview
NameCX671307
Unique NameCX671307
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length769
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5044 contig Csv1_Contig5044:1115..1883. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX671307 vs. ExPASy Swiss-Prot
Match: GLGS2_VICFA (Glucose-1-phosphate adenylyltransferase small subunit 2, chloroplastic OS=Vicia faba GN=AGPP PE=2 SV=1)

HSP 1 Score: 335.88 bits (860), Expect = 1.500e-91
Identity = 162/173 (93.64%), Postives = 172/173 (99.42%), Query Frame = -1 
Query:  251 EDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 769
            EDIGTIEAFYNANLGITKKP+PDFSFYDRS+PIYTQPRYLPPSKMLDAD+TDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKG VPIGIGKNSHI+RAIIDKNARIGD+VKI+NSD+VQEAARET+GYFIKSGIVT+IKDALIPSGT+I
Sbjct:  340 EDIGTIEAFYNANLGITKKPVPDFSFYDRSSPIYTQPRYLPPSKMLDADITDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGGVPIGIGKNSHIRRAIIDKNARIGDDVKIINSDNVQEAARETEGYFIKSGIVTVIKDALIPSGTVI 512
[Close]
BLAST of CX671307 vs. ExPASy Swiss-Prot
Match: GLGS_BRANA (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic OS=Brassica napus GN=AGPS1 PE=2 SV=1)

HSP 1 Score: 333.954 bits (855), Expect = 5.701e-91
Identity = 161/173 (93.06%), Postives = 171/173 (98.84%), Query Frame = -1 
Query:  251 EDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 769
            EDIGTIEAFYNANLGITKKP+PDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSV+GLRSCISEGAIIEDTLLMGADYYETDADR  LAAKGS+PIGIG++SHIKRAIIDKNARIGDNVKI+N+D+VQEAARETDGYFIKSGIVT+IKDALIPSGT+I
Sbjct:  348 EDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVIGLRSCISEGAIIEDTLLMGADYYETDADRTLLAAKGSIPIGIGRDSHIKRAIIDKNARIGDNVKIINTDNVQEAARETDGYFIKSGIVTVIKDALIPSGTVI 520
[Close]
BLAST of CX671307 vs. ExPASy Swiss-Prot
Match: GLGS_SOLTU (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 333.183 bits (853), Expect = 9.725e-91
Identity = 163/173 (94.22%), Postives = 169/173 (97.69%), Query Frame = -1 
Query:  251 EDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 769
            EDIGTIEAFYNANLGITKKP+PDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIED+LLMGADYYETDADR+ LAAKGSVPIGIGKN HIKRAIIDKNARIGDNVKI+N D+VQEAARETDGYFIKSGIVT+IKDALIPSG II
Sbjct:  349 EDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGIII 521
[Close]
BLAST of CX671307 vs. ExPASy Swiss-Prot
Match: GLGS1_VICFA (Glucose-1-phosphate adenylyltransferase small subunit 1, chloroplastic OS=Vicia faba GN=AGPC PE=2 SV=1)

HSP 1 Score: 332.028 bits (850), Expect = 2.166e-90
Identity = 160/173 (92.49%), Postives = 172/173 (99.42%), Query Frame = -1 
Query:  251 EDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 769
            EDIGTIEAFYNANLGITKKP+PDFSFYDRS+PIYTQPRYLPPSKMLDAD+TDSVIGEGCVIKNCKI HSVVGLRSCISEGAIIEDTLLMGADYYET+AD+RFLAAKGSVPIGIGKNSHIKRAI+DKNARIG+NVKI+NSD+VQEAARET+GYFIKSGIVTIIKDALIPSGT++
Sbjct:  336 EDIGTIEAFYNANLGITKKPVPDFSFYDRSSPIYTQPRYLPPSKMLDADITDSVIGEGCVIKNCKIFHSVVGLRSCISEGAIIEDTLLMGADYYETEADKRFLAAKGSVPIGIGKNSHIKRAIVDKNARIGENVKIINSDNVQEAARETEGYFIKSGIVTIIKDALIPSGTVL 508
[Close]
BLAST of CX671307 vs. ExPASy Swiss-Prot
Match: GLGS_ARATH (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic OS=Arabidopsis thaliana GN=APS1 PE=2 SV=2)

HSP 1 Score: 327.791 bits (839), Expect = 4.086e-89
Identity = 159/173 (91.91%), Postives = 169/173 (97.69%), Query Frame = -1 
Query:  251 EDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 769
            EDIGTIEAFYNANLGITKKP+PDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIED+LLMGADYYET  ++  L+AKGSVPIGIGKNSHIKRAIIDKNARIGDNVKI+NSD+VQEAARETDGYFIKSGIVT+IKDALIP+GT+I
Sbjct:  348 EDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETATEKSLLSAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIINSDNVQEAARETDGYFIKSGIVTVIKDALIPTGTVI 520
[Close]
BLAST of CX671307 vs. ExPASy Swiss-Prot
Match: GLGS_WHEAT (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic OS=Triticum aestivum GN=AGP-S PE=2 SV=1)

HSP 1 Score: 325.094 bits (832), Expect = 2.648e-88
Identity = 157/173 (90.75%), Postives = 168/173 (97.11%), Query Frame = -1 
Query:  251 EDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 769
            EDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPR+LPPSK+LDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYET+AD++ LA KG +PIGIGKNSHIKRAIIDKNARIGDNV I+N D+VQEAARETDGYFIKSGIVT+IKDAL+PSGT+I
Sbjct:  301 EDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRHLPPSKVLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETEADKKLLAEKGGIPIGIGKNSHIKRAIIDKNARIGDNVMIINVDNVQEAARETDGYFIKSGIVTVIKDALLPSGTVI 473
[Close]
BLAST of CX671307 vs. ExPASy Swiss-Prot
Match: GLGS_SOLLC (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 325.094 bits (832), Expect = 2.648e-88
Identity = 159/173 (91.91%), Postives = 167/173 (96.53%), Query Frame = -1 
Query:  251 EDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 769
            EDIGTIEAFYNANLGITKKP+PDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIED+LLMGADYYETDA+R+ LAAKGSVPIGIGKN   KRAIIDKNARIGDNVKI+N D+VQEAARETDGYFIKSGIVT+IKDALIPSG +I
Sbjct:  349 EDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDAERKLLAAKGSVPIGIGKNCLYKRAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGIVI 521
[Close]
BLAST of CX671307 vs. ExPASy Swiss-Prot
Match: GLGS_HORVU (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 325.094 bits (832), Expect = 2.648e-88
Identity = 157/173 (90.75%), Postives = 168/173 (97.11%), Query Frame = -1 
Query:  251 EDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 769
            EDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPR+LPPSK+LDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYET+AD++ LA KG +PIGIGKNSHIKRAIIDKNARIGDNV I+N D+VQEAARETDGYFIKSGIVT+IKDAL+PSGT+I
Sbjct:  341 EDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRHLPPSKVLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETEADKKLLAEKGGIPIGIGKNSHIKRAIIDKNARIGDNVMIINVDNVQEAARETDGYFIKSGIVTVIKDALLPSGTVI 513
[Close]
BLAST of CX671307 vs. ExPASy Swiss-Prot
Match: GLGS_ORYSJ (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=AGPS PE=2 SV=4)

HSP 1 Score: 320.857 bits (821), Expect = 4.995e-87
Identity = 153/173 (88.44%), Postives = 167/173 (96.53%), Query Frame = -1 
Query:  251 EDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 769
            EDIGTIEAFYNANLGITKKP+PDFSFYDRSAPIYTQPR+LPPSK+LDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIED+LLMGADYYET+AD++ L  KG +PIGIGKN HI+RAIIDKNARIGDNVKI+N D+VQEAARETDGYFIKSGIVT+IKDAL+PSGT+I
Sbjct:  342 EDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRHLPPSKVLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETEADKKLLGEKGGIPIGIGKNCHIRRAIIDKNARIGDNVKIINVDNVQEAARETDGYFIKSGIVTVIKDALLPSGTVI 514
[Close]
BLAST of CX671307 vs. ExPASy Swiss-Prot
Match: GLGS_BETVU (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic (Fragment) OS=Beta vulgaris GN=AGPB1 PE=2 SV=1)

HSP 1 Score: 306.22 bits (783), Expect = 1.273e-82
Identity = 151/173 (87.28%), Postives = 161/173 (93.06%), Query Frame = -1 
Query:  251 EDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 769
            EDIGTIEAFYNANLGITKKP+PDFSFYDRS+PIYTQPRYLPPSKMLDAD+TDSVIGEGCVIKNCKIHHSV+GLRSCISEGAIIEDTLLMGADYYETDADR+FLAAKGSVPIGIG            NARIGD+VKI+NSD+VQEAARETDGYFIKSGIVTIIKDA+IPSGT+I
Sbjct:  329 EDIGTIEAFYNANLGITKKPVPDFSFYDRSSPIYTQPRYLPPSKMLDADITDSVIGEGCVIKNCKIHHSVIGLRSCISEGAIIEDTLLMGADYYETDADRKFLAAKGSVPIGIG------------NARIGDDVKIINSDNVQEAARETDGYFIKSGIVTIIKDAMIPSGTVI 489
The following BLAST results are available for this feature:
BLAST of CX671307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
GLGS2_VICFA1.500e-9193.64Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_BRANA5.701e-9193.06Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_SOLTU9.725e-9194.22Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS1_VICFA2.166e-9092.49Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_ARATH4.086e-8991.91Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_WHEAT2.648e-8890.75Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_SOLLC2.648e-8891.91Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_HORVU2.648e-8890.75Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_ORYSJ4.995e-8788.44Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_BETVU1.273e-8287.28Glucose-1-phosphate adenylyltransferase small subu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_10C06_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-10C06-E12-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671307 ID=CX671307; Name=CX671307; organism=Citrus sinensis; type=EST; length=769bp
TTTTTTTTTTTTTTTTTAGAATAGAATGAAAGATTTTATTTCTGCATAAC
TAGACCTTTACAGCATGTCCCTTTTCCAGGTCCTATTTTCCTCTCATAAT
TAACATTACACCGCCCGGAAATATACAGCTTATAGCAAAAAGATGGCCAA
AGGTAAAGTGGAAGCAGACTCGATATTACGACATTCTCGAGCGTAGAGGG
GAAGGTGCCCGTAGCTTGGGATGAAACTGAGAAGAGAAGACGACAGTTTA
GATTATGGTTCCACTGGGAATCAAGGCATCCTTGATTATTGTGACAATCC
CGCTCTTGATGAAGTATCCATCTGTTTCCCTTGCTGCTTCTTGCACACTG
TCACTGTTGACGATCTTCACATTATCCCCAATTCGAGCATTTTTGTCGAT
TATTGCTCTCTTGATGTGAGAATTCTTGCCAATACCAATTGGAACACTAC
CCTTTGCAGCCAAAAACCTCCTGTCCGCATCCGTCTCATAATAATCTGCT
CCCATAAGTAAAGTATCTTCGATAATTGCACCTTCTGATATGCAAGATCG
AAGCCCAACAACAGAATGGTGAATTTTGCAATTCTTAATCACACAGCCTT
CACCAATTACACTATCAGTGACATCAGCATCAAGCATCTTAGAAGGAGGT
AGATATCTAGGCTGTGTATAGATTGGAGCAGAACGGTCATAGAAGCTGAA
ATCCGGAATTGGCTTTTTGGTGATCCCCAGATTCGCATTGTAGAAAGCCT
CAATTGTTCCAATGTCTTC
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