CX671302

Overview
NameCX671302
Unique NameCX671302
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length824
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX671302 vs. ExPASy Swiss-Prot
Match: CID2_ARATH (Polyadenylate-binding protein-interacting protein 2 OS=Arabidopsis thaliana GN=CID2 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.267e-14
Identity = 59/163 (36.20%), Postives = 77/163 (47.24%), Query Frame = -1 
Query:  201 AMVDDRRSGLNPNAPIFIPNAAFGEVEDFSPEWWDLVKTSPLFRDYWLSQHQEXXXXXXXXXXXXXXXXXXXDIVGADLF--VESKEKNLSDFEKGRVLLDGTGNGVDAKALLKNLNVSKPLKERGPKSPVGSAKYCGKKLANKCVMGPKVTAIR--RIHQPR 677
            A +D R S LNPNAP+F P   F EVEDFSP+WWDLV TS  FRD+WLS + E                   + +G D F  +E + + +     G  + D       A  L   LN+++  KE+  +S V S   C  K   K  M P     R   I+QPR
Sbjct:    3 ATIDRRLSTLNPNAPVFDP-VEFREVEDFSPKWWDLVTTSKWFRDFWLSANSE------------------NEFLGGDDFSVMEEEFEEMIASSDGGSMADTVTEADVASYLKMLLNIAESTKEKIYRSKVSS---CSPKYNQKKYMNPNFNCRRNHHIYQPR 143
The following BLAST results are available for this feature:
BLAST of CX671302 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CID2_ARATH1.267e-1436.20Polyadenylate-binding protein-interacting protein ... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_10C02_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-10C02-E4-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671302 ID=CX671302; Name=CX671302; organism=Citrus sinensis; type=EST; length=824bp
TTTTTTTTTATTCAGCAAATGACACATCCTTTATTTCATAGATTAAAGCA
TTTACAAAGGTTTCACTGAACTCGGTTAAAACTATACAGGGAAAGAGATG
AAAATGAACAATACAACACAAATGCAGATGCAAAGCTTGTTTGTAGAAAT
GCAACTAGCTAGAGGGTCAATAAAAACGCATCAGTCTGAAATTTCCTTCA
ACGAGGCTGATGAATGCGCCGTATGGCGGTGACTTTTGGGCCCATCACAC
ACTTATTAGCCAGCTTCTTCCCACAATACTTAGCAGATCCCACTGGAGAC
TTCGGCCCTCGCTCCTTCAAAGGTTTTGATACATTCAAGTTCTTTAACAA
AGCCTTTGCATCCACTCCATTCCCAGTGCCATCGAGAAGCACTCTTCCTT
TCTCGAAATCTGATAAATTTTTTTCTTTAGATTCTACAAACAGATCAGCG
CCGACAATATCAGGAAACTCATCCAAATCCGAGTAATCGTAGTCGTCGAA
ACTGCTGGTAAAATCATCTTCTTGATGCTGACTCAGCCAGTAATCACGGA
ACAGCGGCGAAGTCTTCACAAGGTCCCACCATTCCGGCGAAAAATCCTCC
ACTTCACCAAACGCAGCGTTCGGTATAAATATCGGCGCATTCGGATTCAA
TCCTGACCTTCGATCATCCACCATCGCCATCGCTTCTCAAAACTCGTGGT
CGTTGATTCTTCTGTTCAGTTCAGTCTCAAATGGAAAACTAGCCTTCAAA
ATCATAATAATAAAGGATCTTTCCTGCCTTCATGGACTCTTAATAATGCC
ACCAAAATAAGCCCGTGTGCTTGG
back to top