CX671294
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX671294 vs. ExPASy Swiss-Prot
Match: THOC6_MOUSE (THO complex subunit 6 homolog OS=Mus musculus GN=Thoc6 PE=2 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 5.797e-20 Identity = 65/248 (26.21%), Postives = 114/248 (45.97%), Query Frame = 3 Query: 81 TVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVIS--CVSCITLDASESWVACGSGQNLSV 818 T++ S + ++ G I +S+ + +S S +K + +P H HDGP Y + + D LLS GD G + GW W E + K +L Q P+ VPE NA+ + P+ ++ A GD + D+E+ +GH+DY+HC+ R + ++++G EDG R+WD + K ++ I+ K ++ + + C+ D+ W+ CG G L++ Sbjct: 26 TIFSQSVSPCGKFLAAGNNYGQIAIFSLSAALS------SEAKEESK---KPVVVFHAHDGPVYSMV----STDRHLLSAGD-GEVKGWLWAEILK------------KGCKELWRRQP--PYRTSLEVPEINALLLVPKENSLILAGGDCQLHSMDLETGAFTRALRGHTDYIHCLALRERSPEVLSGGEDGAVRLWDLRIAKEVQTIEVYKHEECSRPHNGRWIGCLATDS--DWMVCGGGPALTL 243
BLAST of CX671294 vs. ExPASy Swiss-Prot
Match: THOC6_RAT (THO complex subunit 6 homolog OS=Rattus norvegicus GN=Thoc6 PE=2 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 7.571e-20 Identity = 65/248 (26.21%), Postives = 114/248 (45.97%), Query Frame = 3 Query: 81 TVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVIS--CVSCITLDASESWVACGSGQNLSV 818 T++ S + ++ G I +S+ + +S S +K + +P H HDGP Y + + D LLS GD G + GW W E + K +L Q P+ VPE NA+ + P+ ++ A GD + D+E+ +GH+DY+HC+ R + ++++G EDG R+WD + K ++ I+ K ++ + + C+ D+ W+ CG G L++ Sbjct: 26 TIFSQSVSPCGKFLAAGNNYGQIAIFSLSAALS------SEAKEESK---KPMVTFHAHDGPVYSMV----STDRHLLSAGD-GEVKGWLWAEILK------------KGCKELWRRQP--PYRTSLEVPEINALLLVPKENSLILAGGDCQLHTMDLETGTFTRALRGHTDYIHCLALRERSPEVLSGGEDGAVRLWDLRIAKEVQTIEVYKHEECSRPHNGRWIGCLATDS--DWMVCGGGPALTL 243
BLAST of CX671294 vs. ExPASy Swiss-Prot
Match: THOC6_HUMAN (THO complex subunit 6 homolog OS=Homo sapiens GN=THOC6 PE=1 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 2.203e-19 Identity = 65/248 (26.21%), Postives = 114/248 (45.97%), Query Frame = 3 Query: 81 TVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVIS--CVSCITLDASESWVACGSGQNLSV 818 T++ S + ++ G I +S+ S +S S +K + +P HDGP Y + + D LLS GD G + W W E + K +L Q P+ VPE NA+ + P+ ++ A GD + D+E+ V +GH+DY+HC+ R + ++++G EDG R+WD ++ K ++ I+ K ++ + + C+ D+ W+ CG G L++ Sbjct: 26 TIFSQSVSPCGKFLAAGNNYGQIAIFSLSSALS------SEAKEESK---KPVVTFQAHDGPVYSMV----STDRHLLSAGD-GEVKAWLWAEMLK------------KGCKELWRRQP--PYRTSLEVPEINALLLVPKENSLILAGGDCQLHTMDLETGTFTRVLRGHTDYIHCLALRERSPEVLSGGEDGAVRLWDLRTAKEVQTIEVYKHEECSRPHNGRWIGCLATDS--DWMVCGGGPALTL 243
BLAST of CX671294 vs. ExPASy Swiss-Prot
Match: THOC6_DANRE (THO complex subunit 6 homolog OS=Danio rerio GN=thoc6 PE=2 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 7.086e-18 Identity = 52/190 (27.37%), Postives = 90/190 (47.37%), Query Frame = 3 Query: 255 HDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQL--KGVISCVSCITLDASESWVACGSGQNLSV 818 HDGP + + + ++ LLS G+ G I W W E + K + +PE NA+ ++P+ + GD+ + D+E+ K V KGH+DY+HC+ + +I++G EDG RIWD ++ + + I+ K ++ +SC+ D+ W+ CG G +LS+ Sbjct: 59 HDGPVFSLL----STESHLLSAGN-GEISAWSWAELIKKSTK--------------AAWTRKPNYETSLEIPEINAMIINPKDNNLIVGGGDNNIHIMDMETGTFKSVLKGHTDYIHCLSFKEREGEILSGGEDGAVRIWDSRTNRPVHCIEVFKYEECARPQFGKWISCLATDS--DWMLCGGGPSLSL 227
BLAST of CX671294 vs. ExPASy Swiss-Prot
Match: THOC6_DROME (THO complex subunit 6 OS=Drosophila melanogaster GN=thoc6 PE=1 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 4.299e-15 Identity = 51/186 (27.42%), Postives = 85/186 (45.70%), Query Frame = 3 Query: 261 GPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWVACGSGQNLSV 818 G D+ + + D L++ G G I G W E ES + +D V VP+ N++ +D + +F+ GD Y +E RI+ ++GH+DY+H +V N+ QI +G+EDGT R+W K + +++P K+ L + +E W+ CG G S+ Sbjct: 59 GSDVDINYLAFHRDFLIV--GAVGLIYGLEWNEEEESLATKRSWEVKIPMQVDAVE------------VPDVNSMWLDSENSILFAGCGDGVIYQVSLEDGRIQREYRGHTDYVHSVVG-NANGQIFSGAEDGTVRVWSTKQQQHTSMLEPYKNPNLLRPDWGKWIGAVAVNEDWLLCGGGPKASI 229 The following BLAST results are available for this feature:
BLAST of CX671294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX671294 ID=CX671294; Name=CX671294; organism=Citrus sinensis; type=EST; length=820bpback to top |