CX671294

Overview
NameCX671294
Unique NameCX671294
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5042 contig Csv1_Contig5042:1..820. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671294 vs. ExPASy Swiss-Prot
Match: THOC6_MOUSE (THO complex subunit 6 homolog OS=Mus musculus GN=Thoc6 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.797e-20
Identity = 65/248 (26.21%), Postives = 114/248 (45.97%), Query Frame = 3
Query:   81 TVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVIS--CVSCITLDASESWVACGSGQNLSV 818
            T++  S       +   ++ G I  +S+ + +S      S +K +     +P    H HDGP Y +     + D  LLS GD G + GW W E  +            K   +L   Q   P+     VPE NA+ + P+  ++  A GD   +  D+E+       +GH+DY+HC+  R  + ++++G EDG  R+WD +  K ++ I+  K ++     +   + C+  D+   W+ CG G  L++
Sbjct:   26 TIFSQSVSPCGKFLAAGNNYGQIAIFSLSAALS------SEAKEESK---KPVVVFHAHDGPVYSMV----STDRHLLSAGD-GEVKGWLWAEILK------------KGCKELWRRQP--PYRTSLEVPEINALLLVPKENSLILAGGDCQLHSMDLETGAFTRALRGHTDYIHCLALRERSPEVLSGGEDGAVRLWDLRIAKEVQTIEVYKHEECSRPHNGRWIGCLATDS--DWMVCGGGPALTL 243          
BLAST of CX671294 vs. ExPASy Swiss-Prot
Match: THOC6_RAT (THO complex subunit 6 homolog OS=Rattus norvegicus GN=Thoc6 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.571e-20
Identity = 65/248 (26.21%), Postives = 114/248 (45.97%), Query Frame = 3
Query:   81 TVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVIS--CVSCITLDASESWVACGSGQNLSV 818
            T++  S       +   ++ G I  +S+ + +S      S +K +     +P    H HDGP Y +     + D  LLS GD G + GW W E  +            K   +L   Q   P+     VPE NA+ + P+  ++  A GD   +  D+E+       +GH+DY+HC+  R  + ++++G EDG  R+WD +  K ++ I+  K ++     +   + C+  D+   W+ CG G  L++
Sbjct:   26 TIFSQSVSPCGKFLAAGNNYGQIAIFSLSAALS------SEAKEESK---KPMVTFHAHDGPVYSMV----STDRHLLSAGD-GEVKGWLWAEILK------------KGCKELWRRQP--PYRTSLEVPEINALLLVPKENSLILAGGDCQLHTMDLETGTFTRALRGHTDYIHCLALRERSPEVLSGGEDGAVRLWDLRIAKEVQTIEVYKHEECSRPHNGRWIGCLATDS--DWMVCGGGPALTL 243          
BLAST of CX671294 vs. ExPASy Swiss-Prot
Match: THOC6_HUMAN (THO complex subunit 6 homolog OS=Homo sapiens GN=THOC6 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.203e-19
Identity = 65/248 (26.21%), Postives = 114/248 (45.97%), Query Frame = 3
Query:   81 TVWGPSKDGSPDTIVIASSDGSITSYSIPSCISKLPLGLSNSKVQQLLGIEPDGFLHGHDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVIS--CVSCITLDASESWVACGSGQNLSV 818
            T++  S       +   ++ G I  +S+ S +S      S +K +     +P      HDGP Y +     + D  LLS GD G +  W W E  +            K   +L   Q   P+     VPE NA+ + P+  ++  A GD   +  D+E+     V +GH+DY+HC+  R  + ++++G EDG  R+WD ++ K ++ I+  K ++     +   + C+  D+   W+ CG G  L++
Sbjct:   26 TIFSQSVSPCGKFLAAGNNYGQIAIFSLSSALS------SEAKEESK---KPVVTFQAHDGPVYSMV----STDRHLLSAGD-GEVKAWLWAEMLK------------KGCKELWRRQP--PYRTSLEVPEINALLLVPKENSLILAGGDCQLHTMDLETGTFTRVLRGHTDYIHCLALRERSPEVLSGGEDGAVRLWDLRTAKEVQTIEVYKHEECSRPHNGRWIGCLATDS--DWMVCGGGPALTL 243          
BLAST of CX671294 vs. ExPASy Swiss-Prot
Match: THOC6_DANRE (THO complex subunit 6 homolog OS=Danio rerio GN=thoc6 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.086e-18
Identity = 52/190 (27.37%), Postives = 90/190 (47.37%), Query Frame = 3
Query:  255 HDGPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQL--KGVISCVSCITLDASESWVACGSGQNLSV 818
            HDGP + +     + ++ LLS G+ G I  W W E  +                       K  +     +PE NA+ ++P+   +    GD+  +  D+E+   K V KGH+DY+HC+  +    +I++G EDG  RIWD ++ + +  I+  K ++         +SC+  D+   W+ CG G +LS+
Sbjct:   59 HDGPVFSLL----STESHLLSAGN-GEISAWSWAELIKKSTK--------------AAWTRKPNYETSLEIPEINAMIINPKDNNLIVGGGDNNIHIMDMETGTFKSVLKGHTDYIHCLSFKEREGEILSGGEDGAVRIWDSRTNRPVHCIEVFKYEECARPQFGKWISCLATDS--DWMLCGGGPSLSL 227          
BLAST of CX671294 vs. ExPASy Swiss-Prot
Match: THOC6_DROME (THO complex subunit 6 OS=Drosophila melanogaster GN=thoc6 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.299e-15
Identity = 51/186 (27.42%), Postives = 85/186 (45.70%), Query Frame = 3
Query:  261 GPAYDVKFYGGNEDALLLSCGDDGRICGWRWKEFTESKVPINLQGNHVKPVLDLVNHQHKGPWGALSPVPENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWVACGSGQNLSV 818
            G   D+ +   + D L++  G  G I G  W E  ES          +   +D V             VP+ N++ +D +   +F+  GD   Y   +E  RI+  ++GH+DY+H +V  N+  QI +G+EDGT R+W  K  +   +++P K+  L           +  +E W+ CG G   S+
Sbjct:   59 GSDVDINYLAFHRDFLIV--GAVGLIYGLEWNEEEESLATKRSWEVKIPMQVDAVE------------VPDVNSMWLDSENSILFAGCGDGVIYQVSLEDGRIQREYRGHTDYVHSVVG-NANGQIFSGAEDGTVRVWSTKQQQHTSMLEPYKNPNLLRPDWGKWIGAVAVNEDWLLCGGGPKASI 229          
The following BLAST results are available for this feature:
BLAST of CX671294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
THOC6_MOUSE5.797e-2026.21THO complex subunit 6 homolog OS=Mus musculus GN=T... [more]
THOC6_RAT7.571e-2026.21THO complex subunit 6 homolog OS=Rattus norvegicus... [more]
THOC6_HUMAN2.203e-1926.21THO complex subunit 6 homolog OS=Homo sapiens GN=T... [more]
THOC6_DANRE7.086e-1827.37THO complex subunit 6 homolog OS=Danio rerio GN=th... [more]
THOC6_DROME4.299e-1527.42THO complex subunit 6 OS=Drosophila melanogaster G... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_10B10_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-10B10-C20-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671294 ID=CX671294; Name=CX671294; organism=Citrus sinensis; type=EST; length=820bp
ATTCAACGAACTGGGACGAAGATGCTTACAGAAAAAGTATACTGAAGGAA
AGAGAGATCCTGACCCGAACCGTATTTCGAACCGTTTGGGGCCCCTCTAA
AGATGGTAGCCCTGACACCATCGTTATCGCCTCCAGTGACGGCTCTATAA
CATCTTACTCTATTCCTTCTTGCATCTCCAAACTCCCATTGGGTTTGAGT
AATAGCAAGGTTCAACAGTTGTTAGGGATTGAACCTGATGGATTCCTTCA
TGGGCATGATGGACCTGCATATGACGTCAAATTCTATGGTGGTAATGAAG
ATGCTTTGTTGTTGAGTTGTGGAGATGATGGGCGGATTTGTGGGTGGAGG
TGGAAGGAATTTACAGAGTCAAAAGTGCCTATTAATTTACAAGGAAATCA
TGTAAAGCCAGTTCTGGACTTGGTGAATCATCAACACAAGGGTCCTTGGG
GTGCTCTTTCTCCAGTTCCTGAGAATAATGCGATCGCTGTTGATCCTCAG
GGAGGTGCCATCTTTTCGGCAGCGGGTGATTCTTGTGCATATTGCTGGGA
TGTGGAAAGCAGTAGGATCAAAATGGTTTTTAAGGGGCATTCAGACTACT
TGCACTGTATAGTTGCCCGCAATTCCACCAATCAGATTGTAACTGGTTCT
GAGGATGGAACTGCACGAATCTGGGATTGCAAAAGCGGAAAGTGTATTAA
AGTAATTGATCCCGTGAAAGATAAACAGTTGAAAGGAGTCATTTCTTGTG
TTAGTTGCATTACTCTTGATGCNAGCGAGAGCTGGGTGGCTTGTGGCAGT
GGTCAAAATTTGTCAGTCTG
back to top