CX671293
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX671293 vs. ExPASy Swiss-Prot
Match: THOC6_DANRE (THO complex subunit 6 homolog OS=Danio rerio GN=thoc6 PE=2 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 6.934e-23 Identity = 59/205 (28.78%), Postives = 107/205 (52.20%), Query Frame = -1 Query: 345 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQL--KGVISCVSCITLDASESWLACGSGQNLSVWNLPTSECVSTISSHSPIQDVVFDNNQILAVGAEPLLNRFDINGMTLSQIQCAPRSAFSVSLHPSG----VISVGGYGGLVDVISQF 941 E NA+ ++P+ + GD+ + D+E+ K V KGH+DY+HC+ + +I++G EDG RIWD ++ + + I+ K ++ +SC+ D+ W+ CG G +LS+W+L + S ++ V + I++VG P ++ G +QI C+P S +++L+ V++VGG +DV + F Sbjct: 112 EINAMIINPKDNNLIVGGGDNNIHIMDMETGTFKSVLKGHTDYIHCLSFKEREGEILSGGEDGAVRIWDSRTNRPVHCIEVFKYEECARPQFGKWISCLATDS--DWMLCGGGPSLSLWHLRSMSPTSVFPLSGCQREAVSYQDLIMSVGEGPYVSHCLHGGTVKAQIPCSPSSLNTLALNLKNTEHRVMTVGGSSHQIDVFTNF 314
BLAST of CX671293 vs. ExPASy Swiss-Prot
Match: THOC6_HUMAN (THO complex subunit 6 homolog OS=Homo sapiens GN=THOC6 PE=1 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.708e-21 Identity = 55/208 (26.44%), Postives = 107/208 (51.44%), Query Frame = -1 Query: 342 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVIS--CVSCITLDASESWLACGSGQNLSVWNLPTSECVSTISSHSPIQDVVFDNNQILAVGAEPLLNRFDINGMTLSQIQCAPRSAFSVSLHPS------GVISVGGYGGLVDVISQFG 941 E NA+ + P+ ++ A GD + D+E+ V +GH+DY+HC+ R + ++++G EDG R+WD ++ K ++ I+ K ++ + + C+ D+ W+ CG G L++W+L +S + +P + V F + IL+ G +N++ ++G +Q+ + S+SL+ V++ G VDV + G Sbjct: 128 EINALLLVPKENSLILAGGDCQLHTMDLETGTFTRVLRGHTDYIHCLALRERSPEVLSGGEDGAVRLWDLRTAKEVQTIEVYKHEECSRPHNGRWIGCLATDS--DWMVCGGGPALTLWHLRSSTPTTIFPIRAPQKHVTFYQDLILSAGQGRCVNQWQLSGELKAQVPGSSPGLLSLSLNQQPAAPECKVLTAAGNSCRVDVFTNLG 333
BLAST of CX671293 vs. ExPASy Swiss-Prot
Match: THOC6_RAT (THO complex subunit 6 homolog OS=Rattus norvegicus GN=Thoc6 PE=2 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 1.446e-20 Identity = 54/208 (25.96%), Postives = 104/208 (50.00%), Query Frame = -1 Query: 342 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVIS--CVSCITLDASESWLACGSGQNLSVWNLPTSECVSTISSHSPIQDVVFDNNQILAVGAEPLLNRFDINGMTLSQIQCAPRSAFSVSLHPS------GVISVGGYGGLVDVISQFG 941 E NA+ + P+ ++ A GD + D+E+ +GH+DY+HC+ R + ++++G EDG R+WD + K ++ I+ K ++ + + C+ D+ W+ CG G L++W+L +S + +P + V F + IL+ G +N + ++G +Q+ + S+SL+ V++ G VDV + G Sbjct: 128 EINALLLVPKENSLILAGGDCQLHTMDLETGTFTRALRGHTDYIHCLALRERSPEVLSGGEDGAVRLWDLRIAKEVQTIEVYKHEECSRPHNGRWIGCLATDS--DWMVCGGGPALTLWHLRSSTPTTVFPIRAPQKHVTFYQDLILSAGQGCCVNHWQLSGELKAQVPGSSPGLLSLSLNQQPAAPECKVLTASGNSCRVDVFTNLG 333
BLAST of CX671293 vs. ExPASy Swiss-Prot
Match: THOC6_MOUSE (THO complex subunit 6 homolog OS=Mus musculus GN=Thoc6 PE=2 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 1.446e-20 Identity = 54/208 (25.96%), Postives = 104/208 (50.00%), Query Frame = -1 Query: 342 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVIS--CVSCITLDASESWLACGSGQNLSVWNLPTSECVSTISSHSPIQDVVFDNNQILAVGAEPLLNRFDINGMTLSQIQCAPRSAFSVSLHPS------GVISVGGYGGLVDVISQFG 941 E NA+ + P+ ++ A GD + D+E+ +GH+DY+HC+ R + ++++G EDG R+WD + K ++ I+ K ++ + + C+ D+ W+ CG G L++W+L +S + +P + V F + IL+ G +N + ++G +Q+ + S+SL+ V++ G VDV + G Sbjct: 128 EINALLLVPKENSLILAGGDCQLHSMDLETGAFTRALRGHTDYIHCLALRERSPEVLSGGEDGAVRLWDLRIAKEVQTIEVYKHEECSRPHNGRWIGCLATDS--DWMVCGGGPALTLWHLRSSTPTTVFPIRAPQKHVTFYQDLILSAGQGCCVNHWQLSGELKAQVPGSSPGLLSLSLNQQPAAPECKVLTASGNSCRVDVFTNLG 333
BLAST of CX671293 vs. ExPASy Swiss-Prot
Match: THOC6_DROME (THO complex subunit 6 OS=Drosophila melanogaster GN=thoc6 PE=1 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 6.717e-18 Identity = 51/199 (25.63%), Postives = 95/199 (47.74%), Query Frame = -1 Query: 345 NAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLACGSGQNLSVWNLPTSECVSTISSHSPIQDVVFDNNQILAVGAEPLLNRFDINGMTLSQIQCAPRSAFSV--SLHPSGVISVGGYGGLVDVISQF 935 N++ +D + +F+ GD Y +E RI+ ++GH+DY+H +V N+ QI +G+EDGT R+W K + +++P K+ L + +E WL CG G S+++L + E S + F ++ +L G + + +NG+ + I + +S P IS+ G+ + ++ F Sbjct: 117 NSMWLDSENSILFAGCGDGVIYQVSLEDGRIQREYRGHTDYVHSVVG-NANGQIFSGAEDGTVRVWSTKQQQHTSMLEPYKNPNLLRPDWGKWIGAVAVNEDWLLCGGGPKASIFHLRSMESTCVFSFPGRVHLCDFVDDCVLIGGEHNHVQSYTLNGVLQANIPVEHTACYSAVWQTSPIKFISIAGFSNKLHILKDF 314
BLAST of CX671293 vs. ExPASy Swiss-Prot
Match: YY46_ANASP (Uncharacterized WD repeat-containing protein alr3466 OS=Anabaena sp. (strain PCC 7120) GN=alr3466 PE=4 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 1.186e-14 Identity = 48/191 (25.13%), Postives = 90/191 (47.12%), Query Frame = -1 Query: 378 NAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLACGSG-QNLSVWNLPTSECVSTISSHSP-IQDVVF--DNNQILAVGAEPLLNRFDI-NGMTLSQIQCAPRSAFSVSLHPSGVISVGG 935 NA+A P G + S +GD WD+ SS+ + +GH+ +++ +V + + +GS D T R+W+ S KC+ +G S V+ + + S LA GS + + +W++ +S+C+ T H+ + V F D + + + + + ++I + L Q SV+ P G + G Sbjct: 1162 NAVAFSPDGATLASGSGDQTVRLWDISSSKCLYILQGHTSWVNSVVFNPDGSTLASGSSDQTVRLWEINSSKCLCT--------FQGHTSWVNSVVFNPDGSMLASGSSDKTVRLWDISSSKCLHTFQGHTNWVNSVAFNPDGSMLASGSGDQTVRLWEISSSKCLHTFQGHTSWVSSVTFSPDGTMLASG 1344 HSP 2 Score: 80.4925 bits (197), Expect = 1.548e-14 Identity = 57/213 (26.76%), Postives = 97/213 (45.54%), Query Frame = -1 Query: 312 NAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLACGSG-QNLSVWNLPTSECVSTISSH-SPIQDVVFDNN-QILAVGAEPLLNR-FDI-NGMTLSQIQCAPRSAFSVSLHPSGVISVGGYGGLVDVISQFGSHLCTFCCQG 935 N++ G + S + D WD+ S + FKGH+ + +V ++ + +GS D T R+WD SG+C+ + +G V + + S LA GSG Q + +W++ +S+C H S ++ VVF ++ +LA G++ R +DI +G L +Q SV P G + G + + S C + QG Sbjct: 910 NSVGFSQDGKMLASGSDDQTVRLWDISSGQCLKTFKGHTSRVRSVVFSPNSLMLASGSSDQTVRLWDISSGECLYI--------FQGHTGWVYSVAFNLDGSMLATGSGDQTVRLWDISSSQCFYIFQGHTSCVRSVVFSSDGAMLASGSDDQTVRLWDISSGNCLYTLQGHTSCVRSVVFSPDGAMLASGGDDQIVRLWDISSGNCLYTLQG 1114 HSP 3 Score: 80.1073 bits (196), Expect = 2.022e-14 Identity = 54/212 (25.47%), Postives = 99/212 (46.70%), Query Frame = -1 Query: 312 AIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLAC-GSGQNLSVWNLPTSECVSTISSH-SPIQDVVFDNNQI-LAVG-AEPLLNRFDING-MTLSQIQCAPRSAFSVSLHPSGVISVGGYGGLVDVISQFGSHLCTFCCQG 932 ++A + G + + +GD WD+ SS+ +F+GH+ + +V + + +GS+D T R+WD SG C+ L+G SCV + + LA G Q + +W++ + C+ T+ + S ++ +VF N + LA G ++ ++ +DI+ L +Q +V+ P G G G + S C + QG Sbjct: 995 SVAFNLDGSMLATGSGDQTVRLWDISSSQCFYIFQGHTSCVRSVVFSSDGAMLASGSDDQTVRLWDISSGNCLYT--------LQGHTSCVRSVVFSPDGAMLASGGDDQIVRLWDISSGNCLYTLQGYTSWVRFLVFSPNGVTLANGSSDQIVRLWDISSKKCLYTLQGHTNWVNAVAFSPDGATLASGSGDQTVRLWDISSSKCLYILQG 1198 HSP 4 Score: 75.0998 bits (183), Expect = 6.506e-13 Identity = 48/191 (25.13%), Postives = 89/191 (46.60%), Query Frame = -1 Query: 378 NAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLACGSG-QNLSVWNLPTSECVSTISSHSP-IQDVVFD-NNQILAVGAEPLLNRF--DINGMTLSQIQCAPRSAFSVSLHPSGVISVGG 935 N++A +P G + S +GD W++ SS+ F+GH+ ++ + + +GS+D T R+W SG+C+ G + V + + LA GSG Q + +W++ + +C+ T+ H+ + +VF + +LA G++ R +G L + S SV+ G+I G Sbjct: 1288 NSVAFNPDGSMLASGSGDQTVRLWEISSSKCLHTFQGHTSWVSSVTFSPDGTMLASGSDDQTVRLWSISSGECLYT--------FLGHTNWVGSVIFSPDGAILASGSGDQTVRLWSISSGKCLYTLQGHNNWVGSIVFSPDGTLLASGSDDQTVRLWNISSGECLYTLHGHINSVRSVAFSSDGLILASG 1470 HSP 5 Score: 68.1662 bits (165), Expect = 7.952e-11 Identity = 34/128 (26.56%), Postives = 62/128 (48.44%), Query Frame = -1 Query: 552 AIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLACGSG-QNLSVWNLPTSECVSTISS 932 ++ P G + S +GD W + S + +GH++++ IV + +GS+D T R+W+ SG+C+ L G I+ V + + LA GS + + +W++ T EC+ T+ S Sbjct: 1373 SVIFSPDGAILASGSGDQTVRLWSISSGKCLYTLQGHNNWVGSIVFSPDGTLLASGSDDQTVRLWNISSGECLYT--------LHGHINSVRSVAFSSDGLILASGSDDETIKLWDVKTGECIKTLKS 1492
BLAST of CX671293 vs. ExPASy Swiss-Prot
Match: Y2800_ANASP (Uncharacterized WD repeat-containing protein alr2800 OS=Anabaena sp. (strain PCC 7120) GN=alr2800 PE=4 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 1.004e-13 Identity = 37/130 (28.46%), Postives = 60/130 (46.15%), Query Frame = -1 Query: 546 AIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLACGSG-QNLSVWNLPTSECVSTISSHS 932 ++A P G + SA+GD WD++ GH+D++ C+ N + + + D T ++WD GKC++ LK V + A LA GSG + + +WN T EC+ T H+ Sbjct: 731 SVAFHPDGETLASASGDKTIKLWDIQDGTCLQTLTGHTDWVRCVAFSPDGNTLASSAADHTIKLWDVSQGKCLRT--------LKSHTGWVRSVAFSADGQTLASGSGDRTIKIWNYHTGECLKTYIGHT 852
BLAST of CX671293 vs. ExPASy Swiss-Prot
Match: WDR5B_MOUSE (WD repeat-containing protein 5B OS=Mus musculus GN=Wdr5b PE=1 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 6.506e-13 Identity = 42/147 (28.57%), Postives = 74/147 (50.34%), Query Frame = -1 Query: 501 NAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLACGS-GQNLSVWNLPTSECVSTISSHS-PIQDVVFDNNQILAV 935 +++ P G + S+A D+ W K GHS + + + ++++V+ S+D T ++WD +SGKC+K LKG V C + + + GS +++ +W + T +C+ T+S+HS PI V F+ N L V Sbjct: 43 SSVKFSPNGEWLASSAADALIIIWGAYDGNCKKTLYGHSLEISDVAWSSDSSRLVSASDDKTLKVWDMRSGKCLKT--------LKGHSDFVFCCDFNPPSNLIVSGSFDESVKIWEVKTGKCLKTLSAHSDPISAVNFNCNGSLIV 181 HSP 2 Score: 72.4034 bits (176), Expect = 4.217e-12 Identity = 40/145 (27.59%), Postives = 70/145 (48.28%), Query Frame = -1 Query: 516 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLACGSGQNL-SVWNLPTSECVSTIS--SHSPIQDVVFDNN 941 E + +A + SA+ D WD+ S + KGHSD++ C +N IV+GS D + +IW+ K+GKC+K + D +S + + + S + GS L +W+ + +C+ T++ + P+ V F N Sbjct: 83 EISDVAWSSDSSRLVSASDDKTLKVWDMRSGKCLKTLKGHSDFVFCCDFNPPSNLIVSGSFDESVKIWEVKTGKCLKTLSAHSDP--------ISAVNFNCNGSLIVSGSYDGLCRIWDAASGQCLRTLADEGNPPVSFVKFSPN 219
BLAST of CX671293 vs. ExPASy Swiss-Prot
Match: WDR5B_HUMAN (WD repeat-containing protein 5B OS=Homo sapiens GN=WDR5B PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 6.506e-13 Identity = 43/145 (29.66%), Postives = 69/145 (47.59%), Query Frame = -1 Query: 516 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLACGSGQNL-SVWNLPTSECVSTI--SSHSPIQDVVFDNN 941 E + +A + SA+ D WDV S + KGHS+Y+ C +N I++GS D T +IW+ K+GKC+K + D VS + + S S + GS L +W+ + +C+ T+ + P+ V F N Sbjct: 85 EISDVAWSSDSSRLVSASDDKTLKLWDVRSGKCLKTLKGHSNYVFCCNFNPPSNLIISGSFDETVKIWEVKTGKCLKTLSAHSDP--------VSAVHFNCSGSLIVSGSYDGLCRIWDAASGQCLKTLVDDDNPPVSFVKFSPN 221 HSP 2 Score: 68.5514 bits (166), Expect = 6.089e-11 Identity = 37/147 (25.17%), Postives = 74/147 (50.34%), Query Frame = -1 Query: 501 NAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLACGS-GQNLSVWNLPTSECVSTISSHS-PIQDVVFDNNQILAV 935 +++ P G + S++ D W + + GH+ + + + ++++V+ S+D T ++WD +SGKC+K LKG + V C + + + GS + + +W + T +C+ T+S+HS P+ V F+ + L V Sbjct: 45 SSVKFSPNGEWLASSSADRLIIIWGAYDGKYEKTLYGHNLEISDVAWSSDSSRLVSASDDKTLKLWDVRSGKCLKT--------LKGHSNYVFCCNFNPPSNLIISGSFDETVKIWEVKTGKCLKTLSAHSDPVSAVHFNCSGSLIV 183
BLAST of CX671293 vs. ExPASy Swiss-Prot
Match: WDR5B_RAT (WD repeat-containing protein 5B OS=Rattus norvegicus GN=Wdr5b PE=2 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 8.496e-13 Identity = 42/147 (28.57%), Postives = 74/147 (50.34%), Query Frame = -1 Query: 501 NAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLACGS-GQNLSVWNLPTSECVSTISSHS-PIQDVVFDNNQILAV 935 +++ P G + S+A D+ W + K GHS + + + ++++V+ S+D T ++WD +SGKC+K LKG V C + + + GS +++ +W + T +C+ T+S+HS PI V F N L V Sbjct: 43 SSVKFSPNGEWLASSAADALIIIWGAYDGKCKKTLYGHSLEISDVAWSSDSSRLVSASDDKTLKLWDVRSGKCLKT--------LKGHSDFVFCCDFNPPSNLIVSGSFDESVKIWEVKTGKCLKTLSAHSDPISAVHFHCNGSLIV 181 HSP 2 Score: 72.0182 bits (175), Expect = 5.507e-12 Identity = 41/145 (28.28%), Postives = 69/145 (47.59%), Query Frame = -1 Query: 516 ENNAIAVDPQGGAIFSAAGDSCAYCWDVESSRIKMVFKGHSDYLHCIVARNSTNQIVTGSEDGTARIWDCKSGKCIKVIDPVKDKQLKGVISCVSCITLDASESWLACGSGQNL-SVWNLPTSECVSTIS--SHSPIQDVVFDNN 941 E + +A + SA+ D WDV S + KGHSD++ C +N IV+GS D + +IW+ K+GKC+K + D +S + + S + GS L +W+ + +C+ T++ + P+ V F N Sbjct: 83 EISDVAWSSDSSRLVSASDDKTLKLWDVRSGKCLKTLKGHSDFVFCCDFNPPSNLIVSGSFDESVKIWEVKTGKCLKTLSAHSDP--------ISAVHFHCNGSLIVSGSYDGLCRIWDAASGQCLRTLADEGNPPVSFVKFSPN 219 The following BLAST results are available for this feature:
BLAST of CX671293 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 19
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX671293 ID=CX671293; Name=CX671293; organism=Citrus sinensis; type=EST; length=941bpback to top |