CX671289

Overview
NameCX671289
Unique NameCX671289
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length888
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig809 contig Csv1_Contig809:353..1240. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671289 vs. ExPASy Swiss-Prot
Match: GLYN_FLAPR (Serine hydroxymethyltransferase 2, mitochondrial OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 371.703 bits (953), Expect = 3.084e-102
Identity = 185/202 (91.58%), Postives = 193/202 (95.54%), Query Frame = -2
Query:  282 DYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFPTIGFEKETMKYKN 887
            DYE+KINQAVFPGLQGGPHNHTITGLAVALKQATT EYKAYQEQV+SNC+KFA+TL++ GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAY FD AVKLAVKIK E QGTKLKDFVA  QS+ FQSEI+KLRHDVEEYAKQFPTIGFEKETMKYKN
Sbjct:  316 DYEDKINQAVFPGLQGGPHNHTITGLAVALKQATTAEYKAYQEQVMSNCAKFAETLVKSGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYLFDLAVKLAVKIKGEAQGTKLKDFVAAMQSSAFQSEISKLRHDVEEYAKQFPTIGFEKETMKYKN 517          
BLAST of CX671289 vs. ExPASy Swiss-Prot
Match: GLYM_FLAPR (Serine hydroxymethyltransferase 1, mitochondrial OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 362.459 bits (929), Expect = 1.871e-99
Identity = 180/202 (89.11%), Postives = 191/202 (94.55%), Query Frame = -2
Query:  282 DYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFPTIGFEKETMKYKN 887
            DYE+KINQAVFPGLQGGPHNHTITGLAVALKQATT EYKAYQEQV+SN +KFA+TL++ GYELVSGGTENHLVLVNLKNKGIDGS+VEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFD AVKLAVKIK E +GTKLKDFV   +S+  QSEI+KLRHDVEEYAKQFPTIGFEKETMKYKN
Sbjct:  316 DYEDKINQAVFPGLQGGPHNHTITGLAVALKQATTAEYKAYQEQVMSNSAKFAETLVKSGYELVSGGTENHLVLVNLKNKGIDGSKVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDLAVKLAVKIKGEAKGTKLKDFVTAMESSAIQSEISKLRHDVEEYAKQFPTIGFEKETMKYKN 517          
BLAST of CX671289 vs. ExPASy Swiss-Prot
Match: GLYM_SOLTU (Serine hydroxymethyltransferase, mitochondrial OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 362.073 bits (928), Expect = 2.444e-99
Identity = 183/203 (90.15%), Postives = 193/203 (95.07%), Query Frame = -2
Query:  282 DYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQ-SANFQSEIAKLRHDVEEYAKQFPTIGFEKETMKYKN 887
            DYE+KINQAVFPGLQGGPHNHTITGLAVALKQATTPEY+AYQEQVLSN SKFAQ L E GYELVSGGT+NHLVLVN+KNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGF+EEDF KVA FFDAAVK+AVK+K+ETQGTKLKDFVAT + SA  +SEIAKLRHDVEEYAKQFPTIGFEKETMKYKN
Sbjct:  316 DYEDKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYRAYQEQVLSNSSKFAQALGEKGYELVSGGTDNHLVLVNMKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFLEEDFVKVADFFDAAVKIAVKVKAETQGTKLKDFVATLESSAPIKSEIAKLRHDVEEYAKQFPTIGFEKETMKYKN 518          
BLAST of CX671289 vs. ExPASy Swiss-Prot
Match: GLYM_ARATH (Serine hydroxymethyltransferase, mitochondrial OS=Arabidopsis thaliana GN=SHM1 PE=1 SV=1)

HSP 1 Score: 349.362 bits (895), Expect = 1.639e-95
Identity = 175/203 (86.21%), Postives = 191/203 (94.09%), Query Frame = -2
Query:  282 DYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQSAN-FQSEIAKLRHDVEEYAKQFPTIGFEKETMKYKN 887
            D+E+KINQAVFPGLQGGPHNHTITGLAVALKQATT EYKAYQEQVLSN +KFAQTL+E GYELVSGGT+NHLVLVNLK KGIDGSRVEKVLEAVHIA+NKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVA +FD AV +A+K+KSE QGTKLKDFV+  +S++  QSEIAKLRH+VEE+AKQFPTIGFEKETMKYKN
Sbjct:  315 DFEDKINQAVFPGLQGGPHNHTITGLAVALKQATTSEYKAYQEQVLSNSAKFAQTLMERGYELVSGGTDNHLVLVNLKPKGIDGSRVEKVLEAVHIASNKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAEYFDKAVTIALKVKSEAQGTKLKDFVSAMESSSTIQSEIAKLRHEVEEFAKQFPTIGFEKETMKYKN 517          
BLAST of CX671289 vs. ExPASy Swiss-Prot
Match: GLYM_PEA (Serine hydroxymethyltransferase, mitochondrial OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 343.584 bits (880), Expect = 8.994e-94
Identity = 171/201 (85.07%), Postives = 188/201 (93.53%), Query Frame = -2
Query:  288 DYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQSANF-QSEIAKLRHDVEEYAKQFPTIGFEKETMKY 887
            DYE+KINQAVFPGLQGGPHNHTITGLAVALKQATTPEY+AYQEQVLSN SKFA+ L E GY+LVSGGTENHLVLVNLKNKGIDGSRVEKVLE VHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDF KVA +FDAAV LA+K+K+E++GTKLKDFV   Q++++ QSEI+KL+HDVEE+AKQFPTIGFEK TMKY
Sbjct:  316 DYEDKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYRAYQEQVLSNSSKFAKALSEKGYDLVSGGTENHLVLVNLKNKGIDGSRVEKVLELVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFVKVAEYFDAAVSLALKVKAESKGTKLKDFVEALQTSSYVQSEISKLKHDVEEFAKQFPTIGFEKATMKY 516          
BLAST of CX671289 vs. ExPASy Swiss-Prot
Match: GLYM_BOVIN (Serine hydroxymethyltransferase, mitochondrial OS=Bos taurus GN=SHMT2 PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.658e-55
Identity = 108/194 (55.67%), Postives = 140/194 (72.16%), Query Frame = -2
Query:  306 YEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVA-TTQSANFQSEIAKLRHDVEEYAKQFPTIGFE 884
            +E++IN AVFP LQGGPHNH I  +AVALKQA TP ++ Y  Q+L N    A  LLE GY LVSGGT+NHLVLV+L+ KG+DG+R E+VLE V I ANKNT PGD SA+ PGG+R+G PALTSRGF+E+DF KV  F D  V + +++KS+T  TKL+DF +   +      ++A LR  VE++A+ FP  GF+
Sbjct:  311 FEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQILKNAQAMANALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRGFLEDDFRKVVGFIDEGVNIGLEVKSKT--TKLQDFKSFLLKDPETSHQLADLRQRVEQFARAFPMPGFD 502          
BLAST of CX671289 vs. ExPASy Swiss-Prot
Match: GLYC_HUMAN (Serine hydroxymethyltransferase, cytosolic OS=Homo sapiens GN=SHMT1 PE=1 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 1.075e-54
Identity = 104/191 (54.45%), Postives = 138/191 (72.25%), Query Frame = -2
Query:  312 EEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSET-QGTKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFPTIG 881
            E  IN AVFPGLQGGPHNH I G+AVALKQA T E+K YQ QV++NC   ++ L E+GY++V+GG++NHL+LV+L++KG DG R EKVLEA  IA NKNT PGD SA+ P G+R+GTPALTSRG +E+DF KVA+F    ++L ++I+S+T     LK+F        +Q+ +  LR +VE +A  FP  G
Sbjct:  289 ESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTLEFKVYQHQVVANCRALSEALTELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDRSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTLQIQSDTGVRATLKEFKERLAGDKYQAAVQALREEVESFASLFPLPG 479          
BLAST of CX671289 vs. ExPASy Swiss-Prot
Match: GLYC_PONAB (Serine hydroxymethyltransferase, cytosolic OS=Pongo abelii GN=SHMT1 PE=2 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 3.127e-54
Identity = 104/191 (54.45%), Postives = 136/191 (71.20%), Query Frame = -2
Query:  312 EEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSET-QGTKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFPTIG 881
            E  IN AVFPGLQGGPHNH I G+AVALKQA T E+K YQ QV++NC   ++ L E+GY++V+GG++NHL+LV+L++KG DG R EKVLEA  IA NKNT PGD SA+ P G+R+GTPALTSRG +E+DF KVA+F    ++L ++I+S+T     LK+F        +Q  +  LR  VE +A  FP  G
Sbjct:  289 ESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTLEFKVYQHQVVANCRALSEALTELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDRSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTLQIQSDTGVRATLKEFKERLAGDKYQGAVQALREKVESFASLFPLPG 479          
BLAST of CX671289 vs. ExPASy Swiss-Prot
Match: GLYC_SHEEP (Serine hydroxymethyltransferase, cytosolic OS=Ovis aries GN=SHMT1 PE=1 SV=3)

HSP 1 Score: 211.46 bits (537), Expect = 5.334e-54
Identity = 107/193 (55.44%), Postives = 139/193 (72.02%), Query Frame = -2
Query:  312 EEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTK--LKDFVATTQSA-NFQSEIAKLRHDVEEYAKQFPTIG 881
            E  IN AVFPGLQGGPHNH I G+AVALKQA TPE++AYQ QV++NC   A+ L+ +GY +V+GG++NHL+LV+L++KG DG R EKVLEA  IA NKNT PGD SA+ P G+R+GTPALTSRG +EEDF KVA+F    ++L ++I+ +  G K  LK+F+     A   Q  +  LR +VE +A  FP  G
Sbjct:  289 ESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFRAYQRQVVANCRALAEALMGLGYRVVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFRKVAHFIHRGIELTLQIQ-DAVGVKATLKEFMEKLAGAEEHQRAVTALRAEVESFATLFPLPG 480          
BLAST of CX671289 vs. ExPASy Swiss-Prot
Match: GLYC_BOVIN (Serine hydroxymethyltransferase, cytosolic OS=Bos taurus GN=SHMT1 PE=2 SV=3)

HSP 1 Score: 211.075 bits (536), Expect = 6.967e-54
Identity = 107/193 (55.44%), Postives = 139/193 (72.02%), Query Frame = -2
Query:  312 EEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTK--LKDFVATTQSA-NFQSEIAKLRHDVEEYAKQFPTIG 881
            E  IN AVFPGLQGGPHNH I G+AVALKQA TPE++AYQ QV++NC   A+ L+ +GY +V+GG++NHL+LV+L++KG DG R EKVLEA  IA NKNT PGD SA+ P G+R+GTPALTSRG +EEDF KVA+F    ++L ++I+ +  G K  LK+F+     A      +A LR +VE +A  FP  G
Sbjct:  289 ESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFRAYQRQVVANCRALAEALMGLGYRVVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQKVAHFIHRGIELTLQIQ-DAVGVKATLKEFMEKLAGAEEHHRAVAALRAEVESFATLFPLPG 480          
The following BLAST results are available for this feature:
BLAST of CX671289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYN_FLAPR3.084e-10291.58Serine hydroxymethyltransferase 2, mitochondrial O... [more]
GLYM_FLAPR1.871e-9989.11Serine hydroxymethyltransferase 1, mitochondrial O... [more]
GLYM_SOLTU2.444e-9990.15Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_ARATH1.639e-9586.21Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_PEA8.994e-9485.07Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_BOVIN1.658e-5555.67Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_HUMAN1.075e-5454.45Serine hydroxymethyltransferase, cytosolic OS=Homo... [more]
GLYC_PONAB3.127e-5454.45Serine hydroxymethyltransferase, cytosolic OS=Pong... [more]
GLYC_SHEEP5.334e-5455.44Serine hydroxymethyltransferase, cytosolic OS=Ovis... [more]
GLYC_BOVIN6.967e-5455.44Serine hydroxymethyltransferase, cytosolic OS=Bos ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_10B08_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-10B08-C16-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671289 ID=CX671289; Name=CX671289; organism=Citrus sinensis; type=EST; length=888bp
TTTTTTTTTTTTTAGGTGAAAAAAGATATCGCTTCTAGTTTTATTGCAGG
TTTATTTGCTTCCTGAAAGCCTCAGTAAATACAGAGTACTTTATATACAT
TAATTGTGATCTAAATCAAGGTTTGCTGTATATTGTATTCATAAAAGCGC
CAAATCACAGGGTCGATAGTTGATACATGGCTCATCATCGTAAGTTACAT
TTCATCCCTCGTCGCCTCTGTGTAATAAAAGCTCATACAGGCTGGCTTCC
GCTACTCTAGTACAGTGGCGTTTTTCTCTCAGTTCTTGTACTTCATGGTT
TCCTTTTCAAACCCAATTGTGGGGAATTGCTTTGCATACTCCTCAACATC
ATGGCGAAGTTTCGCAATCTCGGATTGGAAGTTAGCGGACTGTGTTGTGG
CCACGAAATCTTTCAACTTTGTTCCTTGAGTTTCAGACTTGATCTTCACA
GCCAACTTCACAGCAGCATCAAAGAAATATGCTACCTTGGCAAAATCCTC
CTCAACAAATCCCCTAGAAGTAAGAGCCGGAGTTCCCATCCTGATGCCAC
CTGGAACCATGGCCGACACATCCCCAGGAACAGTGTTTTTGTTGGCTGCA
ATATGAACAGCTTCCAACACTTTTTCAACTCTGGAACCATCAATTCCCTT
GTTTTTCAAATTCACCAACACTAGATGGTTCTCAGTTCCACCAGAAACAA
GTTCATAGCCCATCTCGAGCAGAGTCTGTGCAAATTTTGAGCAATTGCTC
AGAACTTGCTCTTGATAGGCTTTATACTCTGGAGTAGTGGCCTGTTTCAA
GGCAACTGCTAAACCAGTAATTGTGTGGTTGTGTGGGCCACCTTGGAGTC
CAGGAAAGACAGCTTGATTTATTTTTTCTTCATAATCA
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