FC871744

Overview
NameFC871744
Unique NameFC871744
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length720
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6898 contig Csv1_Contig6898:3..722. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC871744 vs. ExPASy Swiss-Prot
Match: Y5620_ARATH (Putative RNA methyltransferase At5g10620 OS=Arabidopsis thaliana GN=At5g10620 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.358e-48
Identity = 98/157 (62.42%), Postives = 117/157 (74.52%), Query Frame = 2
Query:    2 RALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNIISSDDW--------------------------GASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 394
            RALPIRVITVGKKRS GV+L+VDEY  KLK YC  ED  +RSNP+N  DV+AQ++DE++A+M +I SDDW                          GASRISFCIGG YGHG ++R+RAN++I+LSSMVLNHQIAL+VL+EQLYRSWTILKGQNYHH
Sbjct:   37 RALPIRVITVGKKRSEGVRLLVDEYKIKLKPYCSFEDSLVRSNPRNAQDVRAQVEDEEVAMMKLIGSDDWVVVLDERGRDIDSEQMAELLGDAGNSGASRISFCIGGAYGHGTQVRKRANVTIRLSSMVLNHQIALVVLMEQLYRSWTILKGQNYHH 193          
BLAST of FC871744 vs. ExPASy Swiss-Prot
Match: RLMH_MYXXD (Ribosomal RNA large subunit methyltransferase H OS=Myxococcus xanthus (strain DK 1622) GN=rlmH PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.444e-13
Identity = 50/156 (32.05%), Postives = 78/156 (50.00%), Query Frame = 2
Query:    8 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCK---VEDLQLRSNPKNTGDVKAQIKDEDMAVMNIISSDDW-------------------------GASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 391
            + +R++++GK RS   +  V EY  +L +Y +   VE  +        GD KA    E  A+++     DW                         GA  + F IGG  G   ++R+ AN+++ LS M L H++A +VL+EQLYR++TILKG+ YH
Sbjct:    1 MKVRLLSIGKDRSGLYEPAVQEYAKRLGHYTRFELVEMAEASGKRLKPGDAKAA---EAEAILSKRKPQDWLVALDERGSLLDSVELSRYVGKAQTGAKDLLFIIGGDEGLDARVRDAANLTLSLSKMTLPHRLARVVLIEQLYRAFTILKGEPYH 153          
BLAST of FC871744 vs. ExPASy Swiss-Prot
Match: RLMH_THET8 (Ribosomal RNA large subunit methyltransferase H OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=rlmH PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.886e-13
Identity = 43/137 (31.39%), Postives = 75/137 (54.74%), Query Frame = 2
Query:   14 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN----PKNTGDVKAQIKDEDMAVMNIISSDD-------WGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 391
            +RV+ VG+ R    +L V+EY  +++ Y  ++ + +R      PK  G  K  + +       ++++++       W   R++F +GG  GH   +RE A++ + LS + L H++ALLVL+EQLYR  T+  G  YH
Sbjct:    3 LRVVAVGRPRLAYARLGVEEYARRMRRYAPLDLVFVRKGEELLPKAEGHRKVVLDERG----RLLTTEELYRRLLAWEGERVAFLVGGAEGHPEAVREEADLLLSLSPLTLQHELALLVLMEQLYRVLTLRAGHPYH 135          
BLAST of FC871744 vs. ExPASy Swiss-Prot
Match: RLMH_THET2 (Ribosomal RNA large subunit methyltransferase H OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=rlmH PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.886e-13
Identity = 43/137 (31.39%), Postives = 75/137 (54.74%), Query Frame = 2
Query:   14 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN----PKNTGDVKAQIKDEDMAVMNIISSDD-------WGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 391
            +RV+ VG+ R    +L V+EY  +++ Y  ++ + +R      PK  G  K  + +       ++++++       W   R++F +GG  GH   +RE A++ + LS + L H++ALLVL+EQLYR  T+  G  YH
Sbjct:    3 LRVVAVGRPRLAYARLGVEEYARRMRRYAPLDLVFVRKGEELLPKAEGHRKVVLDERG----RLLTTEELYRRLLVWEGERVAFLVGGAEGHPEAVREEADLLLSLSPLTLQHELALLVLMEQLYRVLTLRAGHPYH 135          
BLAST of FC871744 vs. ExPASy Swiss-Prot
Match: RLMH_FLAPJ (Ribosomal RNA large subunit methyltransferase H OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=rlmH PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.167e-13
Identity = 45/155 (29.03%), Postives = 75/155 (48.39%), Query Frame = 2
Query:   14 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRS---NPKNTGDVKAQIKDEDMAVMNIISSDDW-------------------------GASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 394
            I++I +GK  +  +Q ++D+Y  +L +Y K  DL++ +   N KN  + + + K+ ++ +  I  +D                           G   + F IGGPYG    + ++    I LS M  +HQ+  L  +EQLYR +TILK + YHH
Sbjct:    3 IKLIAIGKTDNKNLQTLIDDYTKRLSFYIKF-DLEIIADIKNVKNLSETQQKEKEGELILSKITPTDQLILLDENGKTFSSVAFSDQLQKKMNSGIKTLVFVIGGPYGFSDDVYKKTFGKISLSQMTFSHQMVRLFFIEQLYRGFTILKNEPYHH 156          
BLAST of FC871744 vs. ExPASy Swiss-Prot
Match: RLMH_FLAJ1 (Ribosomal RNA large subunit methyltransferase H OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=rlmH PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.223e-12
Identity = 43/155 (27.74%), Postives = 76/155 (49.03%), Query Frame = 2
Query:   14 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLR---SNPKNTGDVKAQIKDEDMAVMNIISSDDW-------------------------GASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 394
            I++I +GK  +  +Q ++D+Y  +L +Y K  DL++     N KN  + + + K+ ++ +  + ++D                           G   + F IGGPYG    + ++A   + LS M  +HQ+  L  +EQLYR +TIL+ + YHH
Sbjct:    3 IKLIAIGKTDNKSLQTLIDDYTKRLSFYIKF-DLEIIPDIKNVKNLSESQQKEKEGELILSKLSATDQLILLDENGKTFSSVGFSEELQKKMNSGVKTLVFVIGGPYGFSETIYKKAQGKVSLSLMTFSHQMVRLFFIEQLYRGFTILRNEPYHH 156          
BLAST of FC871744 vs. ExPASy Swiss-Prot
Match: RLMH_GEOSF (Ribosomal RNA large subunit methyltransferase H OS=Geobacter sp. (strain FRC-32) GN=rlmH PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.597e-12
Identity = 45/151 (29.80%), Postives = 71/151 (47.02%), Query Frame = 2
Query:   14 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--------------------PKNTGDVKAQIKDEDMAVMNII----SSDDWGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 394
            ++V+ VGK +   V+  +DEY G++  Y  ++  + R                      PKN   V    + E M+   +     ++ D G   + F IGG YG    +R +A  +I LS M   HQ+  + L+EQLYR +TI+ G+ YHH
Sbjct:    3 LKVLWVGKTQEEWVRRGIDEYAGRIGRYMSIDLAEARDEKGAAVEAMREREGERLLKLLPKNARLVLLDERGEQMSSPELARFLATNRDGGTQELVFVIGGAYGFSDSLRAKAFKTISLSRMTFTHQMVRIFLLEQLYRGFTIINGEPYHH 153          
BLAST of FC871744 vs. ExPASy Swiss-Prot
Match: RLMH_GRAFK (Ribosomal RNA large subunit methyltransferase H OS=Gramella forsetii (strain KT0803) GN=rlmH PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.724e-12
Identity = 45/159 (28.30%), Postives = 78/159 (49.06%), Query Frame = 2
Query:    8 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVE-----DLQLRSNPKNTGDVKAQIKDEDMAVMNIISSD-------------------------DWGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 394
            + I+++ +GK     ++ ++  Y  +L++Y K E     DL+     KN  + + + K+ ++ +  + +SD                         + G  R+ F IGGPYG   ++ +RA+  I LS M  +HQ+  L   EQLYR++TILK + YHH
Sbjct:    1 MTIKLVCIGKTDKKELEALIKIYSDRLQHYIKFEFEIIPDLK---KTKNLDENQQKSKEGELILSGVQNSDFVVLLDENGKQFSSESFSEYIQKRMNTGLKRLIFVIGGPYGFSEEVYKRADSKISLSKMTFSHQMVRLFFTEQLYRAFTILKNEPYHH 156          
BLAST of FC871744 vs. ExPASy Swiss-Prot
Match: RLMH_GEOUR (Ribosomal RNA large subunit methyltransferase H OS=Geobacter uraniireducens (strain Rf4) GN=rlmH PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.724e-12
Identity = 45/154 (29.22%), Postives = 73/154 (47.40%), Query Frame = 2
Query:    8 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--------------------PKNT-----GDVKAQIKDEDMAVMNIISSDDWGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 394
            + +RV+ VGK +   V+  +DEY G+++ Y  +E  + +                      P+N       +   Q+   D+A   I ++ D G   ++F IGG YG     R  A  +I LS M   HQ+  + L+EQ+YR +TI+ G+ YHH
Sbjct:    1 MKMRVLWVGKTQEEWVRRGIDEYAGRIRRYTPLELAEAKEEKGAAAEAMREREGERLVKLLPRNARLILLDERGEQLSSPDLAGF-IAANRDGGVQELAFAIGGAYGFSDSFRSMAYKTIALSRMTFTHQMVRIFLLEQIYRGFTIINGEPYHH 153          
BLAST of FC871744 vs. ExPASy Swiss-Prot
Match: RLMH_CYTH3 (Ribosomal RNA large subunit methyltransferase H OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=rlmH PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.557e-12
Identity = 49/156 (31.41%), Postives = 78/156 (50.00%), Query Frame = 2
Query:    8 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNT---GDVKAQ---------IKDEDMAVM-----NIISSDDWG----------ASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 394
            + +++ T+GK     ++    +Y  +L +Y   E L++   PKNT    DV  +         ++D D  ++     N  +S ++G          A  + F IGGPYG    + +RAN  I LS M  +HQ+  L  +EQLYR+ TI+KG+ YHH
Sbjct:    1 MKLQLWTIGKTNDAYLKEGCAQYTKRLPHYLPFEYLEI-PEPKNTKLSSDVLKKEEEKLIFDRLQDSDQLILLDEKGNEFTSTEFGQYIQKKMNSVAGNLIFLIGGPYGFSDAVYKRANGKIALSKMTFSHQMVRLFALEQLYRACTIIKGEKYHH 155          
The following BLAST results are available for this feature:
BLAST of FC871744 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
Y5620_ARATH2.358e-4862.42Putative RNA methyltransferase At5g10620 OS=Arabid... [more]
RLMH_MYXXD1.444e-1332.05Ribosomal RNA large subunit methyltransferase H OS... [more]
RLMH_THET81.886e-1331.39Ribosomal RNA large subunit methyltransferase H OS... [more]
RLMH_THET21.886e-1331.39Ribosomal RNA large subunit methyltransferase H OS... [more]
RLMH_FLAPJ7.167e-1329.03Ribosomal RNA large subunit methyltransferase H OS... [more]
RLMH_FLAJ11.223e-1227.74Ribosomal RNA large subunit methyltransferase H OS... [more]
RLMH_GEOSF1.597e-1229.80Ribosomal RNA large subunit methyltransferase H OS... [more]
RLMH_GRAFK2.724e-1228.30Ribosomal RNA large subunit methyltransferase H OS... [more]
RLMH_GEOUR2.724e-1229.22Ribosomal RNA large subunit methyltransferase H OS... [more]
RLMH_CYTH33.557e-1231.41Ribosomal RNA large subunit methyltransferase H OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK3BC01FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK3BC01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871744 ID=FC871744; Name=FC871744; organism=Citrus sinensis; type=EST; length=720bp
GAGAGCATTGCCCATTCGTGTCATAACAGTTGGCAAAAAGAGGTCTCTGG
GTGTACAATTAGTTGTGGATGAGTACATTGGAAAGCTTAAATATTACTGC
AAAGTTGAGGATCTTCAACTCCGATCCAATCCCAAAAATACTGGTGATGT
GAAGGCTCAGATTAAGGATGAAGACATGGCGGTGATGAACATTATCAGCT
CTGATGATTGGGGAGCTTCAAGGATATCATTTTGCATCGGTGGACCTTAT
GGCCATGGACCAAAAATGAGAGAACGCGCTAACATATCAATCAAGCTGTC
TTCAATGGTCTTAAATCATCAAATTGCATTACTTGTACTTGTGGAACAAC
TTTATAGGTCGTGGACAATTCTGAAGGGTCAAAATTACCATCATTAGGAT
GCCAATTTGGCTGTCTGCTTGAATAGTCCAATGGATGAGCGTTTCTTGTT
CGTGATGGTTAGTTGAAGAAGCACTCTGAATTTTGATTTGATGAAGTAAA
CTACCAAATGGACTTGCTCCCAAACAAGCATTTGTCAACAGACTCAATTT
GTTTCAATGGAGAGATTGAAATGATACGGTATGTTCAGTGTCCAGTAATT
ATTGCTTGTTGCAGTACTGCTTCAGTGTACTGTATAATTCTTGATCCAAT
GTACTGAGAGTCAGAGACCATTTTGAACGAAATTTGAATAGTTTGTTTTA
TAAAAAAAAAAAAAAAAAAA
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