FC871744
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC871744 vs. ExPASy Swiss-Prot
Match: Y5620_ARATH (Putative RNA methyltransferase At5g10620 OS=Arabidopsis thaliana GN=At5g10620 PE=2 SV=1) HSP 1 Score: 192.2 bits (487), Expect = 2.358e-48 Identity = 98/157 (62.42%), Postives = 117/157 (74.52%), Query Frame = 2 Query: 2 RALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNIISSDDW--------------------------GASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 394 RALPIRVITVGKKRS GV+L+VDEY KLK YC ED +RSNP+N DV+AQ++DE++A+M +I SDDW GASRISFCIGG YGHG ++R+RAN++I+LSSMVLNHQIAL+VL+EQLYRSWTILKGQNYHH Sbjct: 37 RALPIRVITVGKKRSEGVRLLVDEYKIKLKPYCSFEDSLVRSNPRNAQDVRAQVEDEEVAMMKLIGSDDWVVVLDERGRDIDSEQMAELLGDAGNSGASRISFCIGGAYGHGTQVRKRANVTIRLSSMVLNHQIALVVLMEQLYRSWTILKGQNYHH 193
BLAST of FC871744 vs. ExPASy Swiss-Prot
Match: RLMH_MYXXD (Ribosomal RNA large subunit methyltransferase H OS=Myxococcus xanthus (strain DK 1622) GN=rlmH PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.444e-13 Identity = 50/156 (32.05%), Postives = 78/156 (50.00%), Query Frame = 2 Query: 8 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCK---VEDLQLRSNPKNTGDVKAQIKDEDMAVMNIISSDDW-------------------------GASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 391 + +R++++GK RS + V EY +L +Y + VE + GD KA E A+++ DW GA + F IGG G ++R+ AN+++ LS M L H++A +VL+EQLYR++TILKG+ YH Sbjct: 1 MKVRLLSIGKDRSGLYEPAVQEYAKRLGHYTRFELVEMAEASGKRLKPGDAKAA---EAEAILSKRKPQDWLVALDERGSLLDSVELSRYVGKAQTGAKDLLFIIGGDEGLDARVRDAANLTLSLSKMTLPHRLARVVLIEQLYRAFTILKGEPYH 153
BLAST of FC871744 vs. ExPASy Swiss-Prot
Match: RLMH_THET8 (Ribosomal RNA large subunit methyltransferase H OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=rlmH PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.886e-13 Identity = 43/137 (31.39%), Postives = 75/137 (54.74%), Query Frame = 2 Query: 14 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN----PKNTGDVKAQIKDEDMAVMNIISSDD-------WGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 391 +RV+ VG+ R +L V+EY +++ Y ++ + +R PK G K + + ++++++ W R++F +GG GH +RE A++ + LS + L H++ALLVL+EQLYR T+ G YH Sbjct: 3 LRVVAVGRPRLAYARLGVEEYARRMRRYAPLDLVFVRKGEELLPKAEGHRKVVLDERG----RLLTTEELYRRLLAWEGERVAFLVGGAEGHPEAVREEADLLLSLSPLTLQHELALLVLMEQLYRVLTLRAGHPYH 135
BLAST of FC871744 vs. ExPASy Swiss-Prot
Match: RLMH_THET2 (Ribosomal RNA large subunit methyltransferase H OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=rlmH PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.886e-13 Identity = 43/137 (31.39%), Postives = 75/137 (54.74%), Query Frame = 2 Query: 14 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN----PKNTGDVKAQIKDEDMAVMNIISSDD-------WGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 391 +RV+ VG+ R +L V+EY +++ Y ++ + +R PK G K + + ++++++ W R++F +GG GH +RE A++ + LS + L H++ALLVL+EQLYR T+ G YH Sbjct: 3 LRVVAVGRPRLAYARLGVEEYARRMRRYAPLDLVFVRKGEELLPKAEGHRKVVLDERG----RLLTTEELYRRLLVWEGERVAFLVGGAEGHPEAVREEADLLLSLSPLTLQHELALLVLMEQLYRVLTLRAGHPYH 135
BLAST of FC871744 vs. ExPASy Swiss-Prot
Match: RLMH_FLAPJ (Ribosomal RNA large subunit methyltransferase H OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=rlmH PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 7.167e-13 Identity = 45/155 (29.03%), Postives = 75/155 (48.39%), Query Frame = 2 Query: 14 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRS---NPKNTGDVKAQIKDEDMAVMNIISSDDW-------------------------GASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 394 I++I +GK + +Q ++D+Y +L +Y K DL++ + N KN + + + K+ ++ + I +D G + F IGGPYG + ++ I LS M +HQ+ L +EQLYR +TILK + YHH Sbjct: 3 IKLIAIGKTDNKNLQTLIDDYTKRLSFYIKF-DLEIIADIKNVKNLSETQQKEKEGELILSKITPTDQLILLDENGKTFSSVAFSDQLQKKMNSGIKTLVFVIGGPYGFSDDVYKKTFGKISLSQMTFSHQMVRLFFIEQLYRGFTILKNEPYHH 156
BLAST of FC871744 vs. ExPASy Swiss-Prot
Match: RLMH_FLAJ1 (Ribosomal RNA large subunit methyltransferase H OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=rlmH PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.223e-12 Identity = 43/155 (27.74%), Postives = 76/155 (49.03%), Query Frame = 2 Query: 14 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLR---SNPKNTGDVKAQIKDEDMAVMNIISSDDW-------------------------GASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 394 I++I +GK + +Q ++D+Y +L +Y K DL++ N KN + + + K+ ++ + + ++D G + F IGGPYG + ++A + LS M +HQ+ L +EQLYR +TIL+ + YHH Sbjct: 3 IKLIAIGKTDNKSLQTLIDDYTKRLSFYIKF-DLEIIPDIKNVKNLSESQQKEKEGELILSKLSATDQLILLDENGKTFSSVGFSEELQKKMNSGVKTLVFVIGGPYGFSETIYKKAQGKVSLSLMTFSHQMVRLFFIEQLYRGFTILRNEPYHH 156
BLAST of FC871744 vs. ExPASy Swiss-Prot
Match: RLMH_GEOSF (Ribosomal RNA large subunit methyltransferase H OS=Geobacter sp. (strain FRC-32) GN=rlmH PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.597e-12 Identity = 45/151 (29.80%), Postives = 71/151 (47.02%), Query Frame = 2 Query: 14 IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--------------------PKNTGDVKAQIKDEDMAVMNII----SSDDWGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 394 ++V+ VGK + V+ +DEY G++ Y ++ + R PKN V + E M+ + ++ D G + F IGG YG +R +A +I LS M HQ+ + L+EQLYR +TI+ G+ YHH Sbjct: 3 LKVLWVGKTQEEWVRRGIDEYAGRIGRYMSIDLAEARDEKGAAVEAMREREGERLLKLLPKNARLVLLDERGEQMSSPELARFLATNRDGGTQELVFVIGGAYGFSDSLRAKAFKTISLSRMTFTHQMVRIFLLEQLYRGFTIINGEPYHH 153
BLAST of FC871744 vs. ExPASy Swiss-Prot
Match: RLMH_GRAFK (Ribosomal RNA large subunit methyltransferase H OS=Gramella forsetii (strain KT0803) GN=rlmH PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.724e-12 Identity = 45/159 (28.30%), Postives = 78/159 (49.06%), Query Frame = 2 Query: 8 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVE-----DLQLRSNPKNTGDVKAQIKDEDMAVMNIISSD-------------------------DWGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 394 + I+++ +GK ++ ++ Y +L++Y K E DL+ KN + + + K+ ++ + + +SD + G R+ F IGGPYG ++ +RA+ I LS M +HQ+ L EQLYR++TILK + YHH Sbjct: 1 MTIKLVCIGKTDKKELEALIKIYSDRLQHYIKFEFEIIPDLK---KTKNLDENQQKSKEGELILSGVQNSDFVVLLDENGKQFSSESFSEYIQKRMNTGLKRLIFVIGGPYGFSEEVYKRADSKISLSKMTFSHQMVRLFFTEQLYRAFTILKNEPYHH 156
BLAST of FC871744 vs. ExPASy Swiss-Prot
Match: RLMH_GEOUR (Ribosomal RNA large subunit methyltransferase H OS=Geobacter uraniireducens (strain Rf4) GN=rlmH PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.724e-12 Identity = 45/154 (29.22%), Postives = 73/154 (47.40%), Query Frame = 2 Query: 8 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSN--------------------PKNT-----GDVKAQIKDEDMAVMNIISSDDWGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 394 + +RV+ VGK + V+ +DEY G+++ Y +E + + P+N + Q+ D+A I ++ D G ++F IGG YG R A +I LS M HQ+ + L+EQ+YR +TI+ G+ YHH Sbjct: 1 MKMRVLWVGKTQEEWVRRGIDEYAGRIRRYTPLELAEAKEEKGAAAEAMREREGERLVKLLPRNARLILLDERGEQLSSPDLAGF-IAANRDGGVQELAFAIGGAYGFSDSFRSMAYKTIALSRMTFTHQMVRIFLLEQIYRGFTIINGEPYHH 153
BLAST of FC871744 vs. ExPASy Swiss-Prot
Match: RLMH_CYTH3 (Ribosomal RNA large subunit methyltransferase H OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=rlmH PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.557e-12 Identity = 49/156 (31.41%), Postives = 78/156 (50.00%), Query Frame = 2 Query: 8 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNT---GDVKAQ---------IKDEDMAVM-----NIISSDDWG----------ASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 394 + +++ T+GK ++ +Y +L +Y E L++ PKNT DV + ++D D ++ N +S ++G A + F IGGPYG + +RAN I LS M +HQ+ L +EQLYR+ TI+KG+ YHH Sbjct: 1 MKLQLWTIGKTNDAYLKEGCAQYTKRLPHYLPFEYLEI-PEPKNTKLSSDVLKKEEEKLIFDRLQDSDQLILLDEKGNEFTSTEFGQYIQKKMNSVAGNLIFLIGGPYGFSDAVYKRANGKIALSKMTFSHQMVRLFALEQLYRACTIIKGEKYHH 155 The following BLAST results are available for this feature:
BLAST of FC871744 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 34
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Sequences
The
following sequences are available for this feature:
EST sequence >FC871744 ID=FC871744; Name=FC871744; organism=Citrus sinensis; type=EST; length=720bpback to top |