CX047692

Overview
NameCX047692
Unique NameCX047692
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length559
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX047692 vs. ExPASy Swiss-Prot
Match: Y4844_ARATH (Uncharacterized protein At4g28440 OS=Arabidopsis thaliana GN=At4g28440 PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 1.975e-37
Identity = 80/129 (62.02%), Postives = 92/129 (71.32%), Query Frame = 1 
Query:   67 AMATAGATAKRKPVFIKVDQLKPGTTGHTLTVKVVSSKPVQVNKPRGAXXXXXXXXXXXXXXIAECLVGDDTGAIYFTARNDQVDIMTPGTTVILRNAKIDMFKGSMRLAVDKWGRIEVTEPADFEVKE 453
            A+AT  +T KRKPVF+KV+QLKPGTTGHTLTVKV+ +  V V   R                I ECL+GD+TG I FTARNDQVD+M PG TVILRN++IDMFKG+MRL VDKWGRIE T  A F VKE
Sbjct:    8 AVATGTSTVKRKPVFVKVEQLKPGTTGHTLTVKVIEANIV-VPVTRKTRPASSLSRPSQPSRIVECLIGDETGCILFTARNDQVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKE 135
The following BLAST results are available for this feature:
BLAST of CX047692 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y4844_ARATH1.975e-3762.02Uncharacterized protein At4g28440 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_15H12_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-15H12-P24-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047692 ID=CX047692; Name=CX047692; organism=Citrus sinensis; type=EST; length=559bp
GTCGCTGCTTCAATTCTCATTCCCTCACAAATCCTAAACCTAGACCTAGT
ATTCGGGTTCTTTATTGCGATGGCGACGGCGGGTGCGACGGCAAAGAGGA
AGCCGGTCTTTATTAAGGTCGATCAGCTCAAGCCAGGAACCACCGGCCAT
ACGCTGACGGTCAAGGTGGTGTCGTCGAAGCCCGTGCAGGTCAACAAGCC
ACGTGGCGCAAGGTCATTGTCCTCTCTCTCTCAGCCTTCTCGACCACCTC
GCATCGCCGAGTGCCTCGTCGGCGACGACACCGGTGCCATCTACTTCACT
GCCCGCAACGACCAAGTTGATATTATGACGCCGGGCACCACTGTGATTCT
ACGCAATGCTAAGATTGATATGTTCAAGGGGTCAATGAGGCTAGCAGTCG
ACAAATGGGGACGCATTGAAGTCACCGAACCTGCTGACTTTGAAGTTAAA
GAGAGTAACAATCTTTCTTTAGTTGAGTATGAGTTAGTTAATGTGGAGTG
ATTGGTATCATTTGGAGGTGAATATTTGTAGGTTAGTATTTCTGGAGGTA
TGATTCTTC
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