CX047650 | Citrus Genome Database

Overview


Name	CX047650
Unique Name	CX047650
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	399

Libraries


Library Name	Type
Ruby Orange Developing Seed cDNA Library UCRCS09	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CX047650 vs. ExPASy Swiss-Prot
Match: PSBI_WHEAT (Photosystem II reaction center protein I OS=Triticum aestivum GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.123e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = -1

Query:  241 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 348
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CX047650 vs. ExPASy Swiss-Prot
Match: PSBI_VITVI (Photosystem II reaction center protein I OS=Vitis vinifera GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.123e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = -1

Query:  241 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 348
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CX047650 vs. ExPASy Swiss-Prot
Match: PSBI_TOBAC (Photosystem II reaction center protein I OS=Nicotiana tabacum GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.123e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = -1

Query:  241 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 348
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CX047650 vs. ExPASy Swiss-Prot
Match: PSBI_SPIOL (Photosystem II reaction center protein I OS=Spinacia oleracea GN=psbI PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.123e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = -1

Query:  241 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 348
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CX047650 vs. ExPASy Swiss-Prot
Match: PSBI_SOYBN (Photosystem II reaction center protein I OS=Glycine max GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.123e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = -1

Query:  241 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 348
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CX047650 vs. ExPASy Swiss-Prot
Match: PSBI_SORBI (Photosystem II reaction center protein I OS=Sorghum bicolor GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.123e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = -1

Query:  241 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 348
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CX047650 vs. ExPASy Swiss-Prot
Match: PSBI_SOLTU (Photosystem II reaction center protein I OS=Solanum tuberosum GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.123e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = -1

Query:  241 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 348
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CX047650 vs. ExPASy Swiss-Prot
Match: PSBI_SOLLC (Photosystem II reaction center protein I OS=Solanum lycopersicum GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.123e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = -1

Query:  241 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 348
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CX047650 vs. ExPASy Swiss-Prot
Match: PSBI_SOLBU (Photosystem II reaction center protein I OS=Solanum bulbocastanum GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.123e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = -1

Query:  241 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 348
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CX047650 vs. ExPASy Swiss-Prot
Match: PSBI_SINAL (Photosystem II reaction center protein I OS=Sinapis alba GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.123e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = -1

Query:  241 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 348
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

The following BLAST results are available for this feature:

BLAST of CX047650 vs. ExPASy Swiss-Prot

BLAST of CX047650 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112


Match Name	E-value	Identity	Description
PSBI_WHEAT	7.123e-14	100.00	Photosystem II reaction center protein I OS=Tritic...	[more]
PSBI_VITVI	7.123e-14	100.00	Photosystem II reaction center protein I OS=Vitis ...	[more]
PSBI_TOBAC	7.123e-14	100.00	Photosystem II reaction center protein I OS=Nicoti...	[more]
PSBI_SPIOL	7.123e-14	100.00	Photosystem II reaction center protein I OS=Spinac...	[more]
PSBI_SOYBN	7.123e-14	100.00	Photosystem II reaction center protein I OS=Glycin...	[more]
PSBI_SORBI	7.123e-14	100.00	Photosystem II reaction center protein I OS=Sorghu...	[more]
PSBI_SOLTU	7.123e-14	100.00	Photosystem II reaction center protein I OS=Solanu...	[more]
PSBI_SOLLC	7.123e-14	100.00	Photosystem II reaction center protein I OS=Solanu...	[more]
PSBI_SOLBU	7.123e-14	100.00	Photosystem II reaction center protein I OS=Solanu...	[more]
PSBI_SINAL	7.123e-14	100.00	Photosystem II reaction center protein I OS=Sinapi...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS09_15F05_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-15F05-L10-1-5.b, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX047650 ID=CX047650; Name=CX047650; organism=Citrus sinensis; type=EST; length=399bp
TTTTTTTTATTTTCAATTAGGAGAGATGGCTAAGTGGATTAAAGCGTCGG
ATTGCTAATCCGGTGTACGAGTTCTTCGTACCGAGGGTTCGAATCCCTCT
CTTTCCGTTTCGGGCGATGGCTTGGTATTTTTCAAATTTAACTTTAGCGA
ACACTTTTACTTTATTTTTAATAGTAACTGGGAATCAAAAAATCCTAAGA
ACGTTTATACGAATAAAGTAAGCAACTCCTTCCTTTTTTATTCTTCGCGT
CCGGGATTACGCCCTGGATCATTAGACAGGAATCCGAAGATGAAGAGCGA
AACAAAGAATATCACTACGGTGTAAACAAAGAGTTTGAGAGTAAGCATTA
CACAATCTCCAAATCAGGTTTTTGGGGAAAAGGAAAAAGAGAATAGCCT