CX047633

Overview
NameCX047633
Unique NameCX047633
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length582
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047633 vs. ExPASy Swiss-Prot
Match: AMERL_ARATH (Uncharacterized protein At2g38710 OS=Arabidopsis thaliana GN=At2g38710 PE=2 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 1.902e-70
Identity = 124/161 (77.02%), Postives = 147/161 (91.30%), Query Frame = 2
Query:    2 VNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQSTLFALHYSDYASYVKTTRVQLRPFL 484
            VNGGEPRLRGCIGTLEAR LI+GFKDYALTSAL+DRRFPPIQA+ELPSL+CTVS+LTD+E A +YLDWEVG HG+IIEFT+PE +T+RSATYLPEV AHEGWTK+EAIDSL+RKAG++G ITE++R+RI LTRYQSTLF++HYS+Y SYVK TR  + P +
Sbjct:   45 VNGGEPRLRGCIGTLEARRLISGFKDYALTSALRDRRFPPIQAKELPSLQCTVSVLTDYEDAEDYLDWEVGKHGIIIEFTEPETNTKRSATYLPEVPAHEGWTKIEAIDSLVRKAGYNGVITEAVRRRINLTRYQSTLFSMHYSEYLSYVKATRGVVGPVI 205          
BLAST of CX047633 vs. ExPASy Swiss-Prot
Match: AMERL_PONAB (AMMECR1-like protein OS=Pongo abelii GN=AMMECR1L PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 1.855e-41
Identity = 80/144 (55.56%), Postives = 104/144 (72.22%), Query Frame = 2
Query:    8 GGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQSTLFALHYSDY 439
            G + RLRGCIGT  A  L +G ++Y LTSALKD RFPP+   ELP L C+VS+LT+FE A++YLDWEVG HG+ IEF + E   +R+ATYLPEVA  + W +++ IDSL+RK GF  PIT   RK I+LTRY+S    + Y++Y
Sbjct:  145 GRDKRLRGCIGTFSAMNLHSGLREYTLTSALKDSRFPPLTREELPKLFCSVSLLTNFEDASDYLDWEVGVHGIRIEFIN-EKGVKRTATYLPEVAKEQDWDQIQTIDSLLRKGGFKAPITSEFRKTIKLTRYRSEKVTISYAEY 287          
BLAST of CX047633 vs. ExPASy Swiss-Prot
Match: AMERL_HUMAN (AMMECR1-like protein OS=Homo sapiens GN=AMMECR1L PE=1 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 1.855e-41
Identity = 80/144 (55.56%), Postives = 104/144 (72.22%), Query Frame = 2
Query:    8 GGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQSTLFALHYSDY 439
            G + RLRGCIGT  A  L +G ++Y LTSALKD RFPP+   ELP L C+VS+LT+FE A++YLDWEVG HG+ IEF + E   +R+ATYLPEVA  + W +++ IDSL+RK GF  PIT   RK I+LTRY+S    + Y++Y
Sbjct:  145 GRDKRLRGCIGTFSAMNLHSGLREYTLTSALKDSRFPPLTREELPKLFCSVSLLTNFEDASDYLDWEVGVHGIRIEFIN-EKGVKRTATYLPEVAKEQDWDQIQTIDSLLRKGGFKAPITSEFRKTIKLTRYRSEKVTISYAEY 287          
BLAST of CX047633 vs. ExPASy Swiss-Prot
Match: AMERL_MOUSE (AMMECR1-like protein OS=Mus musculus GN=Ammecr1l PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.423e-41
Identity = 80/144 (55.56%), Postives = 104/144 (72.22%), Query Frame = 2
Query:    8 GGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQSTLFALHYSDY 439
            G + RLRGCIGT  A  L +G ++Y LTSALKD RFPP+   ELP L C+VS+LT+FE A++YLDWEVG HG+ IEF + E   +R+ATYLPEVA  + W +++ IDSL+RK GF  PIT   RK I+LTRY+S    + Y++Y
Sbjct:  145 GRDKRLRGCIGTFSAMNLHSGLREYTLTSALKDSRFPPLTREELPKLFCSVSLLTNFEDASDYLDWEVGVHGIRIEFIN-EKGIKRTATYLPEVAKEQDWDQIQTIDSLLRKGGFKAPITSEFRKSIKLTRYRSEKVTISYAEY 287          
BLAST of CX047633 vs. ExPASy Swiss-Prot
Match: AMER1_PONAB (AMME syndrome candidate gene 1 protein homolog OS=Pongo abelii GN=AMMECR1 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 5.397e-41
Identity = 80/147 (54.42%), Postives = 105/147 (71.43%), Query Frame = 2
Query:    8 GGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQSTLFALHYSDYASY 448
            G + RLRGCIGT  A  L +G ++Y LTSALKD RFPP+   ELP L C+VS+LT+FE   +YLDWEVG HG+ IEF + E  ++R+ATYLPEVA  +GW  ++ IDSL+RK G+  PIT   RK I+LTRY+S    L Y++Y ++
Sbjct:  167 GRDKRLRGCIGTFSAMNLHSGLREYTLTSALKDSRFPPMTRDELPRLFCSVSLLTNFEDVCDYLDWEVGVHGIRIEFIN-EKGSKRTATYLPEVAKEQGWDHIQTIDSLLRKGGYKAPITNEFRKTIKLTRYRSEKMTLSYAEYLAH 312          
BLAST of CX047633 vs. ExPASy Swiss-Prot
Match: AMER1_MOUSE (AMME syndrome candidate gene 1 protein homolog OS=Mus musculus GN=Ammecr1 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 5.397e-41
Identity = 80/147 (54.42%), Postives = 105/147 (71.43%), Query Frame = 2
Query:    8 GGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQSTLFALHYSDYASY 448
            G + RLRGCIGT  A  L +G ++Y LTSALKD RFPP+   ELP L C+VS+LT+FE   +YLDWEVG HG+ IEF + E  ++R+ATYLPEVA  +GW  ++ IDSL+RK G+  PIT   RK I+LTRY+S    L Y++Y ++
Sbjct:  178 GRDKRLRGCIGTFSAMNLHSGLREYTLTSALKDSRFPPMTRDELPRLFCSVSLLTNFEDVCDYLDWEVGVHGIRIEFIN-EKGSKRTATYLPEVAKEQGWDHIQTIDSLLRKGGYKAPITNEFRKTIKLTRYRSEKMTLSYAEYLAH 323          
BLAST of CX047633 vs. ExPASy Swiss-Prot
Match: AMER1_HUMAN (AMME syndrome candidate gene 1 protein OS=Homo sapiens GN=AMMECR1 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 5.397e-41
Identity = 80/147 (54.42%), Postives = 105/147 (71.43%), Query Frame = 2
Query:    8 GGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQSTLFALHYSDYASY 448
            G + RLRGCIGT  A  L +G ++Y LTSALKD RFPP+   ELP L C+VS+LT+FE   +YLDWEVG HG+ IEF + E  ++R+ATYLPEVA  +GW  ++ IDSL+RK G+  PIT   RK I+LTRY+S    L Y++Y ++
Sbjct:  167 GRDKRLRGCIGTFSAMNLHSGLREYTLTSALKDSRFPPMTRDELPRLFCSVSLLTNFEDVCDYLDWEVGVHGIRIEFIN-EKGSKRTATYLPEVAKEQGWDHIQTIDSLLRKGGYKAPITNEFRKTIKLTRYRSEKMTLSYAEYLAH 312          
BLAST of CX047633 vs. ExPASy Swiss-Prot
Match: Y5902_DROME (Uncharacterized protein CG5902 OS=Drosophila melanogaster GN=CG5902 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.122e-37
Identity = 76/147 (51.70%), Postives = 99/147 (67.35%), Query Frame = 2
Query:    8 GGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQSTLFALHYSDYASY 448
            G + RLRGCIGT  A  L +G ++YALTSA KD RF PI   ELP L  +VSIL +FE A  +LDW++G HG+ IEF   E   +R+ATYLP+VA  +GW +++ IDSL+RK G+   IT   RK I+LTRY+S    +HY +Y  Y
Sbjct:   86 GRDKRLRGCIGTFSAMELHHGLREYALTSAFKDSRFAPISRDELPRLTVSVSILQNFEEAQGHLDWQLGVHGIRIEFL-TERGCKRTATYLPQVATEQGWDQLQTIDSLLRKGGYRAAITPETRKSIKLTRYRSQEIQMHYKEYREY 231          
BLAST of CX047633 vs. ExPASy Swiss-Prot
Match: AMERL_CAEEL (Uncharacterized protein R166.3 OS=Caenorhabditis elegans GN=R166.3 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.428e-33
Identity = 69/147 (46.94%), Postives = 92/147 (62.59%), Query Frame = 2
Query:    8 GGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQSTLFALHYSDYASY 448
            G +  LRGCIGT     L  G  +YA TSA  D RF PI   E+PSL+C VS+L +FE  +N+ DW +G HG+ + F D      RSA +LPEVA  +GW  VE ID L+RK+G+ G I ++LR  +R+ R+QS+   L Y DY +Y
Sbjct:   46 GHQHDLRGCIGTFSDLRLGEGLNEYAKTSAFHDSRFKPISREEVPSLQCGVSLLINFEPIHNFRDWTIGRHGVRMNFDDGH--RNRSAVFLPEVAQEQGWNHVETIDHLIRKSGYGGHINDALRSALRIVRFQSSKLVLDYKDYVNY 190          
BLAST of CX047633 vs. ExPASy Swiss-Prot
Match: YKQ3_SCHPO (Uncharacterized protein C688.03c OS=Schizosaccharomyces pombe GN=SPAC688.03c PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.152e-25
Identity = 62/144 (43.06%), Postives = 84/144 (58.33%), Query Frame = 2
Query:    8 GGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKAGFSGPITESLRKRIRLTRYQSTLFALHYSDY 439
            G + +LRGCIGT  AR L+     ++  +A  D RF PI   EL  LEC + +L DFE  ++ LDWEVG HG+ I+FT      R S+TYLP VAA + W + E ++SL+ KAG+ G I      +I  TRY+S      Y +Y
Sbjct:   58 GHDKQLRGCIGTFRARPLVTNLTYFSKQAAFCDERFRPISLGELALLECQIDLLVDFEPIDDPLDWEVGIHGVSIKFT--ANGIRYSSTYLPSVAAEQRWDQEETLESLIHKAGYYGSIRS---LQITATRYKSLEIGCTYEEY 196          
The following BLAST results are available for this feature:
BLAST of CX047633 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
AMERL_ARATH1.902e-7077.02Uncharacterized protein At2g38710 OS=Arabidopsis t... [more]
AMERL_PONAB1.855e-4155.56AMMECR1-like protein OS=Pongo abelii GN=AMMECR1L P... [more]
AMERL_HUMAN1.855e-4155.56AMMECR1-like protein OS=Homo sapiens GN=AMMECR1L P... [more]
AMERL_MOUSE2.423e-4155.56AMMECR1-like protein OS=Mus musculus GN=Ammecr1l P... [more]
AMER1_PONAB5.397e-4154.42AMME syndrome candidate gene 1 protein homolog OS=... [more]
AMER1_MOUSE5.397e-4154.42AMME syndrome candidate gene 1 protein homolog OS=... [more]
AMER1_HUMAN5.397e-4154.42AMME syndrome candidate gene 1 protein OS=Homo sap... [more]
Y5902_DROME2.122e-3751.70Uncharacterized protein CG5902 OS=Drosophila melan... [more]
AMERL_CAEEL2.428e-3346.94Uncharacterized protein R166.3 OS=Caenorhabditis e... [more]
YKQ3_SCHPO4.152e-2543.06Uncharacterized protein C688.03c OS=Schizosaccharo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_15E05_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-15E05-J10-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047633 ID=CX047633; Name=CX047633; organism=Citrus sinensis; type=EST; length=582bp
GGTGAATGGTGGGGAACCTCGTTTGCGTGGATGTATCGGAACTCTGGAAG
CTCGTTGCTTGATTAATGGCTTTAAGGACTATGCTTTGACCAGTGCATTG
AAGGACCGAAGGTTTCCTCCTATACAAGCTAGAGAGCTGCCATCCTTGGA
ATGTACAGTTTCTATTTTGACTGATTTTGAAACTGCTAACAACTATCTTG
ACTGGGAGGTTGGAACACATGGTTTAATTATTGAGTTTACTGACCCTGAA
TATAGTACAAGGCGAAGTGCCACATACCTTCCTGAAGTGGCTGCCCATGA
AGGATGGACTAAAGTGGAGGCAATCGACTCACTGATGCGAAAAGCAGGCT
TCAGTGGTCCCATCACCGAGTCACTCCGCAAGCGTATACGACTGACTCGT
TACCAGAGCACACTATTTGCATTGCACTACAGCGACTATGCCTCTTATGT
GAAGACAACTAGGGTGCAGCTCCGTCCATTCTTGGGGCTAAGCCTGGCAA
CTATTGATTCTTCCAAACCGCTTTCGCTAAAACAGCAAAGCTGGTATGGC
CTAAACAAATATTTAAGTTAAAAAAAAAAAAA
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