CV713039

Overview
NameCV713039
Unique NameCV713039
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length394
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV713039 vs. ExPASy Swiss-Prot
Match: TRXH_RICCO (Thioredoxin H-type OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.309e-12
Identity = 33/38 (86.84%), Postives = 38/38 (100.00%), Query Frame = 2 
Query:  101 EAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLATAS 214
            E+MPTFMFLKEGKI+DKVVG+KK+ELQQTIAKH+ATAS
Sbjct:   80 ESMPTFMFLKEGKIMDKVVGAKKDELQQTIAKHMATAS 117
[Close]
BLAST of CV713039 vs. ExPASy Swiss-Prot
Match: TRXH2_TOBAC (Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.776e-12
Identity = 32/38 (84.21%), Postives = 37/38 (97.37%), Query Frame = 2 
Query:  101 EAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLATAS 214
            EAMPTFMFLKEGKIVDKVVG+KK+ELQQTIAKH+++ S
Sbjct:   79 EAMPTFMFLKEGKIVDKVVGAKKDELQQTIAKHISSTS 116
The following BLAST results are available for this feature:
BLAST of CV713039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TRXH_RICCO2.309e-1286.84Thioredoxin H-type OS=Ricinus communis PE=3 SV=1[more]
TRXH2_TOBAC8.776e-1284.21Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_0002D20_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0002D20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV713039 ID=CV713039; Name=CV713039; organism=Citrus sinensis; type=EST; length=394bp
AGCAGAAGGGCTGCAGAAACGGCAGAGGCGGGGAAGCAGAAAACCCAGGA
GACGGGACAGGCAACCGGGGAGAAGGCGGAGGCAGCCAAGGAGAAGACAG
GAGGCCATGCCAACTTTCATGTTCCTGAAAGAGGGGAAGATTGTGGACAA
GGTGGTTGGATCAAAGAAAGAGGAACTGCAGCAGACTATTGCCAAGCATC
TGGCAACTGCCTCTGCCTAATAAGTTATAACTATCCTCCTGCCTTTTGGC
TTTAGAGGCTATAGACCTCAATATATGCTATCAGTCTGTAATTTACTTAT
TAGAGTGGTTATGGGATTGTGTTTGTTTGTGTGTTTGAATATTCCGTAAT
TTACTGTTCTATGAAGCTCATACTGTGGTCTTTACAATAAACCT
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