CV713033

Overview
NameCV713033
Unique NameCV713033
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length487
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV713033 vs. ExPASy Swiss-Prot
Match: THI4_CITSI (Thiazole biosynthetic enzyme, chloroplastic OS=Citrus sinensis GN=THI1 PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 5.718e-55
Identity = 109/111 (98.20%), Postives = 109/111 (98.20%), Query Frame = 1
Query:    1 GPLGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSAETAD 333
            G  GVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSAETAD
Sbjct:  245 GATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSAETAD 355          
BLAST of CV713033 vs. ExPASy Swiss-Prot
Match: THI4_ALNGL (Thiazole biosynthetic enzyme, chloroplastic OS=Alnus glutinosa GN=THI4 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 1.234e-49
Identity = 98/111 (88.29%), Postives = 104/111 (93.69%), Query Frame = 1
Query:    1 GPLGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSAETAD 333
            G  GVK L+SIGMI+ VPGMKALDMN AEDAIVRLTRE+VPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+LG PNALDG+YVGG+HPELILAAADSAE AD
Sbjct:  241 GATGVKSLRSIGMIDTVPGMKALDMNVAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGLPNALDGSYVGGIHPELILAAADSAEIAD 351          
BLAST of CV713033 vs. ExPASy Swiss-Prot
Match: THI4_ARATH (Thiazole biosynthetic enzyme, chloroplastic OS=Arabidopsis thaliana GN=THI1 PE=1 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 2.573e-47
Identity = 95/111 (85.59%), Postives = 101/111 (90.99%), Query Frame = 1
Query:    1 GPLGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSAETAD 333
            G  GVKRLKSIGMI+ VPGMKALDMN+AEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKA  LALK+LG PNA+DGT VG + PEL+LAAADSAET D
Sbjct:  238 GATGVKRLKSIGMIDHVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAGQLALKALGLPNAIDGTLVGNLSPELVLAAADSAETVD 348          
BLAST of CV713033 vs. ExPASy Swiss-Prot
Match: THI41_MAIZE (Thiazole biosynthetic enzyme 1-1, chloroplastic OS=Zea mays GN=THI1-1 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 6.786e-40
Identity = 83/105 (79.05%), Postives = 91/105 (86.67%), Query Frame = 1
Query:    1 GPLGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAAD 315
            G  GVKRL+ IGMI  VPGMKALDMN+AED IVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+LG+PNA+DGT    +  EL++A  D
Sbjct:  244 GATGVKRLQDIGMISAVPGMKALDMNTAEDEIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGRPNAVDGTMSPPLREELMIAYKD 348          
BLAST of CV713033 vs. ExPASy Swiss-Prot
Match: THI42_MAIZE (Thiazole biosynthetic enzyme 1-2, chloroplastic OS=Zea mays GN=THI1-2 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 9.799e-39
Identity = 84/109 (77.06%), Postives = 93/109 (85.32%), Query Frame = 1
Query:    1 GPLGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHP----ELILAAAD 315
            G  GVKRL+ IGMI  VPGMKALDMN+AED IVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+LG+PNA+DGT +  V P    E ++A+ D
Sbjct:  241 GATGVKRLQDIGMISAVPGMKALDMNAAEDEIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGRPNAVDGT-IPEVSPALREEFVIASKD 348          
BLAST of CV713033 vs. ExPASy Swiss-Prot
Match: THI4_FUSSH (Thiazole biosynthetic enzyme, mitochondrial OS=Fusarium solani subsp. phaseoli GN=STI35 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.193e-22
Identity = 53/79 (67.09%), Postives = 65/79 (82.28%), Query Frame = 1
Query:    1 GPLGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 237
            G   VKRL S+G IE++ GM+ LDMN AEDAIV+ TRE+VPG+IV GME++E+DGA RMGPTFGAM++SG KAA  ALK
Sbjct:  235 GAFCVKRLVSMGRIEKLGGMRGLDMNVAEDAIVKGTREIVPGLIVGGMELSEVDGANRMGPTFGAMVLSGLKAAEEALK 313          
BLAST of CV713033 vs. ExPASy Swiss-Prot
Match: THI4_FUSOX (Thiazole biosynthetic enzyme, mitochondrial OS=Fusarium oxysporum GN=STI35 PE=2 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 8.334e-22
Identity = 54/82 (65.85%), Postives = 66/82 (80.49%), Query Frame = 1
Query:    1 GPLG---VKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 237
            GP+G   VKRL S+  IE++ GM+ LDMN AEDAIV+ TRE+VPG+IV GME++E+DGA RMGPTFGAM +SG KAA  ALK
Sbjct:  228 GPMGAFCVKRLVSMQRIEKLGGMRGLDMNLAEDAIVKGTREIVPGLIVGGMELSEVDGANRMGPTFGAMALSGLKAAEEALK 309          
BLAST of CV713033 vs. ExPASy Swiss-Prot
Match: THI4_ASPOR (Thiazole biosynthetic enzyme, mitochondrial OS=Aspergillus oryzae GN=thiA PE=3 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 1.203e-20
Identity = 51/82 (62.20%), Postives = 64/82 (78.05%), Query Frame = 1
Query:    1 GPLGV---KRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 237
            GP G    KRL S+G ++++ GM+ LDMNSAEDAIV+ TREV  G+I+ GME++EIDG  RMGPTFGAM++SG KAA  ALK
Sbjct:  235 GPFGAFCAKRLVSMGSVDKLGGMRGLDMNSAEDAIVKNTREVTKGLIIGGMELSEIDGFNRMGPTFGAMVLSGVKAAEEALK 316          
BLAST of CV713033 vs. ExPASy Swiss-Prot
Match: THI4_UROFA (Thiazole biosynthetic enzyme, mitochondrial OS=Uromyces fabae GN=THI2 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 3.502e-20
Identity = 50/96 (52.08%), Postives = 68/96 (70.83%), Query Frame = 1
Query:    1 GPLG---VKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVG 279
            GP G   VKR+ S G+ E +  M+ LDM  AED I   TRE++PG+IV GME++E DG+ RMGPTFGAM++SG++AA +AL+SL +    +G  VG
Sbjct:  240 GPFGAFCVKRVASAGLSEGLGDMRPLDMERAEDHIANKTREILPGLIVGGMELSEFDGSARMGPTFGAMLLSGKRAAEVALQSLDRVKIEEGEVVG 335          
BLAST of CV713033 vs. ExPASy Swiss-Prot
Match: THI2_SCHPO (Thiazole biosynthetic enzyme, mitochondrial OS=Schizosaccharomyces pombe GN=thi2 PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 2.964e-19
Identity = 52/95 (54.74%), Postives = 63/95 (66.32%), Query Frame = 1
Query:    1 GPLG---VKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYV 276
            GP G   VKRL S  ++  +  M+ LDMN AED IV+ TREV PGMIV GME++E DGA RMGPTFG MM SG KAA  AL    +  A++  Y+
Sbjct:  234 GPFGAFCVKRLASAQLVSNLHDMRPLDMNRAEDLIVKGTREVFPGMIVGGMELSEFDGANRMGPTFGGMMFSGIKAAQEALAIFDERKAVNEKYL 328          
The following BLAST results are available for this feature:
BLAST of CV713033 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
THI4_CITSI5.718e-5598.20Thiazole biosynthetic enzyme, chloroplastic OS=Cit... [more]
THI4_ALNGL1.234e-4988.29Thiazole biosynthetic enzyme, chloroplastic OS=Aln... [more]
THI4_ARATH2.573e-4785.59Thiazole biosynthetic enzyme, chloroplastic OS=Ara... [more]
THI41_MAIZE6.786e-4079.05Thiazole biosynthetic enzyme 1-1, chloroplastic OS... [more]
THI42_MAIZE9.799e-3977.06Thiazole biosynthetic enzyme 1-2, chloroplastic OS... [more]
THI4_FUSSH2.193e-2267.09Thiazole biosynthetic enzyme, mitochondrial OS=Fus... [more]
THI4_FUSOX8.334e-2265.85Thiazole biosynthetic enzyme, mitochondrial OS=Fus... [more]
THI4_ASPOR1.203e-2062.20Thiazole biosynthetic enzyme, mitochondrial OS=Asp... [more]
THI4_UROFA3.502e-2052.08Thiazole biosynthetic enzyme, mitochondrial OS=Uro... [more]
THI2_SCHPO2.964e-1954.74Thiazole biosynthetic enzyme, mitochondrial OS=Sch... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0002D17_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0002D17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV713033 ID=CV713033; Name=CV713033; organism=Citrus sinensis; type=EST; length=487bp
GGGCCACTGGGAGTAAAGAGGTTGAAGAGTATCGGAATGATTGAGGAAGT
GCCTGGAATGAAGGCACTGGACATGAACTCTGCAGAAGATGCTATTGTGA
GGCTGACCAGGGAGGTTGTGCCTGGTATGATAGTTACCGGCATGGAAGTT
GCCGAGATTGATGGTGCTCCTAGAATGGGGCCAACATTTGGAGCAATGAT
GATATCGGGGCAGAAGGCTGCGCATTTGGCGTTGAAGTCACTGGGCCAGC
CGAATGCATTAGACGGTACATATGTGGGAGGTGTTCACCCTGAGCTGATC
TTAGCTGCAGCTGATTCTGCTGAGACTGCTGATGGTTAATTTGATAATAA
CAGGCATCATCACTCATCAGCTGTGTGCATGCAAATAAACTCTGGCAAAA
AAGTAGTTGTATTTAGGTGGTTGTGATGGATGGTTGATGCGAATAATGAG
ATGATGTTGTGAGGTTTTGTGAATAAAGTGTTTGCCT
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