CV713030

Overview
NameCV713030
Unique NameCV713030
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length685
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV713030 vs. ExPASy Swiss-Prot
Match: S36A3_HUMAN (Proton-coupled amino acid transporter 3 OS=Homo sapiens GN=SLC36A3 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 9.786e-17
Identity = 57/209 (27.27%), Postives = 98/209 (46.89%), Query Frame = 3
Query:   45 GMAVFCFEGFGMTFALESSMRERGRFSKLLAQAFTGITLVYVMFGFFGFMAYGDDTKDIVTLNLPKDWSSIAVQMGLCVALIFTFPIMVH-PVHEIIEGSLKKSSFFQTHPCISYDNNSTPRLGKFVIYISRXXXXXXXXXXXSFIPGFGAFTSLVGSTLCSLISFVLPALYHLILLGS-SLNFWQRSLDVCILLCGLLFAVNGTYNSI 665
            G A+F FEG GM   L++ M+   +FS +L    + + ++Y++ G  G+M +G DT+  +TLNLP  W   +V++   + + FT+ +  H P   II  ++ + S                    FV    R             IP      SLVGS   S ++ ++PAL  +++  S  ++    + D+ I + GLL  + GTY ++
Sbjct:  258 GTAIFTFEGVGMVLPLKNQMKHPQQFSFVLYLGMSIVIILYILLGTLGYMKFGSDTQASITLNLPNCWLYQSVKLMYSIGIFFTYALQFHVPAEIIIPFAISQVS---------------ESWALFVDLSVRSALVCLTCVSAILIPRLDLVISLVGSVSSSALALIIPALLEIVIFYSEDMSCVTIAKDIMISIVGLLGCIFGTYQAL 451          
BLAST of CV713030 vs. ExPASy Swiss-Prot
Match: S36A3_RAT (Proton-coupled amino acid transporter 3 OS=Rattus norvegicus GN=Slc36a3 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.846e-15
Identity = 56/208 (26.92%), Postives = 93/208 (44.71%), Query Frame = 3
Query:   45 GMAVFCFEGFGMTFALESSMRERGRFSKLLAQAFTGITLVYVMFGFFGFMAYGDDTKDIVTLNLPKDWSSIAVQMGLCVALIFTFPIMVHPVHEIIEGSLKKSSFFQTHPCISYDNNSTPRLGKFVIYISRXXXXXXXXXXXSFIPGFGAFTSLVGSTLCSLISFVLPALYHLILLGS-SLNFWQRSLDVCILLCGLLFAVNGTYNSI 665
            G A+F FEG GM   L+S M+   +F  +L    + +  +Y+  G  G+M +G DT+  +TLNLP  W   +V++   V + FT+ +  H   EII   +               + ++     F+    R             IP      SLVGS   S ++ ++P L  +    S +++    + D+ I + GLL  V GTY ++
Sbjct:  265 GTAIFTFEGVGMVLPLKSQMKSPQQFPAVLYLGMSFVIFLYICLGTLGYMKFGADTQASITLNLPNCWLYQSVKLMYSVGIFFTYALQFHVPAEIIVPYVV--------------SRASENWALFIDLTVRAALVCLTCFSAVLIPRLDLVISLVGSVSSSALALIIPPLLEIATFYSENISCTTIAKDIMISILGLLGCVLGTYQAL 458          
BLAST of CV713030 vs. ExPASy Swiss-Prot
Match: S36A1_RAT (Proton-coupled amino acid transporter 1 OS=Rattus norvegicus GN=Slc36a1 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.013e-15
Identity = 56/213 (26.29%), Postives = 95/213 (44.60%), Query Frame = 3
Query:   33 PFAGGMAVFCFEGFGMTFALESSMRERGRFSKLLAQAFTGITLVYVMFGFFGFMAYGDDTKDIVTLNLPKDWSSIAVQMGLCVALIFTFPIMVHPVHEIIEGSLKKSSFFQTHPCISYDNNSTPRLGKFVIYIS-RXXXXXXXXXXXSFIPGFGAFTSLVGSTLCSLISFVLPALYHL-ILLGSSLNFWQRSLDVCILLCGLLFAVNGTYNSI 665
            P   G A+F FEG G+   LE+ M++  +F  +L      IT++Y+  G  G++ +G D K  +TLNLP  W   +V++   + + FT+ +  +   EII  ++                +  P   + V+ +S R             IP      SLVGS   S ++ ++P L  +    G  ++    + D  I + G +  V GTY S+
Sbjct:  258 PLFFGTAIFAFEGIGVVLPLENKMKDSQKFPLILYLGMAIITVLYISLGSLGYLQFGADIKGSITLNLPNCWLYQSVKLLYSIGIFFTYALQFYVAAEIIIPAIV---------------SRVPERFELVVDLSARTAMVCVTCVLAVLIPRLDLVISLVGSVSSSALALIIPPLLEVTTYYGEGISPLTITKDALISILGFVGFVVGTYESL 455          
BLAST of CV713030 vs. ExPASy Swiss-Prot
Match: AVT4_YEAST (Vacuolar amino acid transporter 4 OS=Saccharomyces cerevisiae GN=AVT4 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.013e-15
Identity = 59/228 (25.88%), Postives = 108/228 (47.37%), Query Frame = 3
Query:   45 GMAVFCFEGFGMTFALESSMRERGRFSKLLAQAFTGITLVYVMFGFFGFMAYGDDTKDIVTLNLPKDWSSI-AVQMGLCVALIFTFPIMVHPVHEIIEGSL--KKSSFFQTHPCISYDNNSTPRLGKF---VIYISRXXXXXXXXXXXSFIPGFGA-----FTSLVGSTLCSLISFVLPALYHLILLGSSL-----NFW--QRSLDVCILLCGLLFAVNGTYNSIVGV 674
            G A+F FEG G+   ++ SMR   +F  +LA      T++++     G++AYG + + ++ LNLP+    +  +Q+   +A++ + P+ + P  +IIE     K +  +  H  ++      P  GK    + ++             S I  FG+     F S++GS  C  + ++ P++ H  L G+SL      FW  +  LD  ++  G+   +  +Y SI GV
Sbjct:  489 GTAIFAFEGIGLIIPVQDSMRNPEKFPLVLALVILTATILFISIATLGYLAYGSNVQTVILLNLPQSNIFVNLIQLFYSIAIMLSTPLQLFPAIKIIENKFFPKFTKIYVKHDDLTTRVELRPNSGKLNWKIKWLKNFIRSIIVIIVVS-IAYFGSDNLDKFVSVIGSLACIPLVYIYPSMLH--LRGNSLPETKGEFWRFKPMLDTILIFFGIASMLYTSYQSIFGV 713          
BLAST of CV713030 vs. ExPASy Swiss-Prot
Match: S36A3_MOUSE (Proton-coupled amino acid transporter 3 OS=Mus musculus GN=Slc36a3 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.562e-14
Identity = 57/208 (27.40%), Postives = 91/208 (43.75%), Query Frame = 3
Query:   45 GMAVFCFEGFGMTFALESSMRERGRFSKLLAQAFTGITLVYVMFGFFGFMAYGDDTKDIVTLNLPKDWSSIAVQMGLCVALIFTFPIMVHPVHEIIEGSLKKSSFFQTHPCISYDNNSTPRLGKFVIYISRXXXXXXXXXXXSFIPGFGAFTSLVGSTLCSLISFVLPALYHLILLGS-SLNFWQRSLDVCILLCGLLFAVNGTYNSI 665
            G A+F FEG GM   L+S M+   +F  +L    + +  +Y+  G  G+M +G DT+  +TLNLP  W   +V++   V + FT+ +  H   EII   +               +  +     FV    R             IP      SLVGS   S ++ ++P L  +    S +++      D+ I + GLL  V GTY ++
Sbjct:  265 GTAIFTFEGVGMVLPLKSQMKSPQQFPAVLYLGMSFVIFLYICLGTLGYMKFGTDTQASITLNLPICWLYQSVKLMYSVGIFFTYALQFHVPAEIIVPYVV--------------SRVSENWALFVDLTVRTALVCLTCFSAVLIPRLDLVISLVGSVSSSALAIIIPPLLEIATFYSENISCATIVKDIMISILGLLGCVLGTYQAL 458          
BLAST of CV713030 vs. ExPASy Swiss-Prot
Match: UNC47_CAEEL (Vesicular GABA transporter OS=Caenorhabditis elegans GN=unc-47 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 5.937e-14
Identity = 55/219 (25.11%), Postives = 106/219 (48.40%), Query Frame = 3
Query:   12 SSNIRGLPFAGGMAVFCFEGFGMTFALESSMRERGRFSKLLAQAFTGITLVYVMFGFFGFMAYGDDTKDIVTLNLPKDWSSIAVQMGLCVALIFTFPIMVHPVHEIIEGSLKKSSFFQTHPCISYDNNSTP--RLGKFVIYISRXXXXXXXXXXXSFIPGFGAFTSLVGSTLCSLISFVLPALYHLILLGSSLNFWQRSLDVCILLCGLLFAVNGTYNS 662
            S NI  LP   GM VF +        LE +M+   +F+ +L  +     +  V+FG  GF+ +G+ T++ ++ +LP     I V + L V  + ++P+   P +  ++  L K++ F  +P   + +  +P   L ++ + + R             +P       LVG+   +++SF+ PAL+HL +   +LN +++  D  I++ G    ++G Y S
Sbjct:  261 SLNINTLPTIVGMVVFGYTSHIFLPNLEGNMKNPAQFNVMLKWSHIAAAVFKVVFGMLGFLTFGELTQEEISNSLPNQSFKILVNLILVVKALLSYPL---PFYAAVQ--LLKNNLFLGYPQTPFTSCYSPDKSLREWAVTL-RIILVLFTLFVALSVPYLVELMGLVGNITGTMLSFIWPALFHLYIKEKTLNNFEKRFDQGIIIMGCSVCISGVYFS 473          
BLAST of CV713030 vs. ExPASy Swiss-Prot
Match: S36A1_MOUSE (Proton-coupled amino acid transporter 1 OS=Mus musculus GN=Slc36a1 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.013e-13
Identity = 53/213 (24.88%), Postives = 95/213 (44.60%), Query Frame = 3
Query:   33 PFAGGMAVFCFEGFGMTFALESSMRERGRFSKLLAQAFTGITLVYVMFGFFGFMAYGDDTKDIVTLNLPKDWSSIAVQMGLCVALIFTFPIMVHPVHEIIEGSLKKSSFFQTHPCISYDNNSTPRLGKFVIYIS-RXXXXXXXXXXXSFIPGFGAFTSLVGSTLCSLISFVLPALYHLI-LLGSSLNFWQRSLDVCILLCGLLFAVNGTYNSI 665
            P   G A+F FEG G+   LE+ M++  +F  +L      IT++Y+  G  G++ +G + K  +TLNLP  W   +V++   + + FT+ +  +   EII  ++                +  P   + ++ +  R             IP      SLVGS   S ++ ++P L  ++   G  ++    + D  I + G +  V GTY S+
Sbjct:  258 PLFFGTAIFAFEGIGVVLPLENKMKDSQKFPLILYLGMAIITVLYISLGSLGYLQFGANIKGSITLNLPNCWLYQSVKLLYSIGIFFTYALQFYVAAEIIIPAIV---------------SRVPEHFELMVDLCVRTAMVCVTCVLAILIPRLDLVISLVGSVSSSALALIIPPLLEVVTYYGEGISPLTVTKDALISILGFVGFVVGTYESL 455          
BLAST of CV713030 vs. ExPASy Swiss-Prot
Match: S36A4_XENLA (Proton-coupled amino acid transporter 4 OS=Xenopus laevis GN=slc36a4 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.727e-13
Identity = 59/213 (27.70%), Postives = 91/213 (42.72%), Query Frame = 3
Query:   33 PFAGGMAVFCFEGFGMTFALESSMRERGRFSKLLAQAFTGITLVYVMFGFFGFMAYGDDTKDIVTLNLPKD-WSSIAVQMGLCVALIFTFPIMVHPVHEIIEGSLKKSSFFQTHPCISYDNNSTPRLGKFVIYISRXXXXXXXXXXXSFIPGFGAFTSLVGSTLCSLISFVLPALYHLILL-GSSLNFWQRSLDVCILLCGLLFAVNGTYNSI 665
            P   G A+F FEG G+   LE+ MR++  FSK L      +T +Y+     G+  +GD  K  +TLNLP+D W    V++     +  T+ I  +   EII             P ++     T +L     +  R             IP      S VG+   S ++ +LP L  +I     +L+ W    DV I + G +  + GTY +I
Sbjct:  294 PLFFGTAIFAFEGIGVVLPLENRMRDKKDFSKALNIGMAIVTTLYISLATLGYFCFGDQIKGSITLNLPQDSWLYQLVKILYSFGIYVTYAIQYYVPAEII------------LPAVTSRVQKTRKL--LCEFTMRFFLVCLTCAVAVLIPRLDLVISFVGAVSSSTLALILPPLVEIITYHKENLSPWVIMKDVGIAVIGFVGFIAGTYVTI 492          
BLAST of CV713030 vs. ExPASy Swiss-Prot
Match: S36A2_MOUSE (Proton-coupled amino acid transporter 2 OS=Mus musculus GN=Slc36a2 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.564e-13
Identity = 54/213 (25.35%), Postives = 93/213 (43.66%), Query Frame = 3
Query:   33 PFAGGMAVFCFEGFGMTFALESSMRERGRFSKLLAQAFTGITLVYVMFGFFGFMAYGDDTKDIVTLNLPKDWSSIAVQMGLCVALIFTFPIMVHPVHEIIEGSLKKSSFFQTHPCISYDNNSTPRLGKFVIYIS-RXXXXXXXXXXXSFIPGFGAFTSLVGSTLCSLISFVLPALYHLI-LLGSSLNFWQRSLDVCILLCGLLFAVNGTYNSI 665
            P   G A+F FE  G+   LE+ M++   F  +L+   + IT +Y+  G  G++ +GDD K  +TLNLP  W   +V++   V ++ T+ +  +   EII               I    +   +     + +S R             IP      SLVGS   S ++ ++P L  ++   G  ++    + D  I + G +  V GTY ++
Sbjct:  261 PLFFGTAIFSFESIGVVLPLENKMKDARGFPTILSLGMSIITTLYIAIGALGYLRFGDDIKASITLNLPNCWLYQSVKLLYVVGILCTYALQFYVPAEII---------------IPLAVSQVSKRWALPVDLSIRLALVCLTCMLAILIPRLDLVLSLVGSVSSSALALIIPPLLEVVTYYGEGISPLTVTKDALISILGFMGFVVGTYQAL 458          
BLAST of CV713030 vs. ExPASy Swiss-Prot
Match: S36A2_RAT (Proton-coupled amino acid transporter 2 OS=Rattus norvegicus GN=Slc36a2 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.573e-13
Identity = 55/213 (25.82%), Postives = 92/213 (43.19%), Query Frame = 3
Query:   33 PFAGGMAVFCFEGFGMTFALESSMRERGRFSKLLAQAFTGITLVYVMFGFFGFMAYGDDTKDIVTLNLPKDWSSIAVQMGLCVALIFTFPIMVHPVHEIIEGSLKKSSFFQTHPCISYDNNSTPRLGKFVIYIS-RXXXXXXXXXXXSFIPGFGAFTSLVGSTLCSLISFVLPALYHL-ILLGSSLNFWQRSLDVCILLCGLLFAVNGTYNSI 665
            P   G A+F FE  G+   LE+ M++  RF  +L+   + IT +Y+  G  G++ +GDD K  +TLNLP  W   +V++   V ++ T  +  +   EII               I    +   +     + +S R             IP      SLVGS   S ++ ++P L  +    G  ++    + D  I + G +  V GTY ++
Sbjct:  264 PLFFGTAIFSFESIGVVLPLENKMKDARRFPTILSLGMSIITTLYIAIGALGYLRFGDDIKASITLNLPNCWLYQSVKLLYVVGILCTHALQFYVPAEII---------------IPLAVSQVSKRWALPVDLSIRLALVCVTCMLAILIPRLDLVLSLVGSVSSSALALIIPPLLEVTTYYGEGMSPLTITKDALISILGFMGFVVGTYQAL 461          
The following BLAST results are available for this feature:
BLAST of CV713030 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
S36A3_HUMAN9.786e-1727.27Proton-coupled amino acid transporter 3 OS=Homo sa... [more]
S36A3_RAT1.846e-1526.92Proton-coupled amino acid transporter 3 OS=Rattus ... [more]
S36A1_RAT7.013e-1526.29Proton-coupled amino acid transporter 1 OS=Rattus ... [more]
AVT4_YEAST7.013e-1525.88Vacuolar amino acid transporter 4 OS=Saccharomyces... [more]
S36A3_MOUSE1.562e-1427.40Proton-coupled amino acid transporter 3 OS=Mus mus... [more]
UNC47_CAEEL5.937e-1425.11Vesicular GABA transporter OS=Caenorhabditis elega... [more]
S36A1_MOUSE1.013e-1324.88Proton-coupled amino acid transporter 1 OS=Mus mus... [more]
S36A4_XENLA1.727e-1327.70Proton-coupled amino acid transporter 4 OS=Xenopus... [more]
S36A2_MOUSE6.564e-1325.35Proton-coupled amino acid transporter 2 OS=Mus mus... [more]
S36A2_RAT8.573e-1325.82Proton-coupled amino acid transporter 2 OS=Rattus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0002D15_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0002D15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV713030 ID=CV713030; Name=CV713030; organism=Citrus sinensis; type=EST; length=685bp
GGAAAGCAGTGAGTTCTAACATCAGAGGTCTGCCATTTGCTGGAGGAATG
GCAGTATTTTGTTTTGAAGGATTTGGTATGACTTTTGCATTAGAGTCATC
AATGAGAGAAAGAGGAAGGTTTTCCAAGTTGCTTGCTCAGGCTTTTACTG
GGATAACTCTTGTGTATGTTATGTTTGGTTTTTTCGGTTTCATGGCGTAT
GGTGATGACACTAAAGATATTGTTACTCTGAATCTGCCCAAAGATTGGTC
TTCCATTGCAGTTCAGATGGGGTTGTGTGTGGCACTCATATTTACATTTC
CGATCATGGTACACCCGGTTCACGAGATTATAGAGGGGAGTTTGAAGAAG
AGCTCGTTCTTTCAAACGCACCCGTGCATTTCTTATGACAACAATTCGAC
CCCTAGATTAGGAAAGTTCGTGATATACATAAGTCGAGCAATTTTGGTGG
TTGCACTAGCAGCAATAGCATCGTTCATACCAGGATTTGGTGCATTCACA
TCGCTTGTGGGCAGCACCTTATGTTCTCTAATCTCTTTTGTTTTGCCAGC
TTTATACCACTTAATATTGCTAGGCTCATCTTTGAATTTCTGGCAAAGAT
CTCTTGATGTTTGCATATTGCTGTGTGGATTGCTTTTCGCCGTGAATGGT
ACTTATAACTCCATAGTAGGAGTTTGAACAAATCT
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