CX047570

Overview
NameCX047570
Unique NameCX047570
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length473
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX047570 vs. ExPASy Swiss-Prot
Match: PM1_SOYBN (18 kDa seed maturation protein OS=Glycine max GN=GMPM1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.849e-15
Identity = 43/70 (61.43%), Postives = 47/70 (67.14%), Query Frame = -1 
Query:  261 TGGLGYTTADSYSQSTTGMHGRPTGGHQMSALAGHGTGQPAAQVTEGVVGSHPIGVNTGTGHN-RAHNTR 467
            T G G  TA   + STTG +G+P G HQ SA+ GHGTGQP   VTEGVVGSHPIG N G G    AHNTR
Sbjct:   92 TTGTGTGTA---TYSTTGEYGQPMGAHQTSAMPGHGTGQPTGHVTEGVVGSHPIGTNRGPGGTATAHNTR 158
The following BLAST results are available for this feature:
BLAST of CX047570 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PM1_SOYBN1.849e-1561.4318 kDa seed maturation protein OS=Glycine max GN=G... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_14H11_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-14H11-P21-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047570 ID=CX047570; Name=CX047570; organism=Citrus sinensis; type=EST; length=473bp
TTTTTTTTTCACAAATCAAGCAACTTTTTATTCAACATTTATAATAAAAG
GGCAACAACACATCACACATTACATCACATGATAATACGCTGCTAGTCAG
ATAGACAAGAAGCCAAACAGAAAGCACACTAGAGGATCGTGCAACCTCAT
TCTTACAAATTGACCCTTATTACATAAAACACAAAGGCCAACTTCATAAA
AAAAATCTAATTGTAAGAACCACCAGTGCCATATCCAGTGGCTCCCCCAC
CGCCCCCAACTCGCGTGTTATGTGCGCGGTTGTGGCCCGTCCCAGTATTG
ACTCCAATCGGATGCGACCCCACCACCCCTTCAGTCACCTGCGCAGCCGG
TTGCCCTGTTCCATGACCGGCAAGGGCCGACATCTGATGGCCTCCAGTCG
GACGACCGTGCATCCCAGTGGTCGACTGCGAGTAGCTGTCAGCTGTTGTA
TAGCCAAGCCCACCCGTCGCCCT
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