CX047564

Overview
NameCX047564
Unique NameCX047564
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length505
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047564 vs. ExPASy Swiss-Prot
Match: RAB5_TOBAC (Ras-related protein Rab5 OS=Nicotiana tabacum GN=RAB5 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.063e-21
Identity = 47/70 (67.14%), Postives = 60/70 (85.71%), Query Frame = -2
Query:  286 WVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 495
            WV+ELQK G+P++VMAL GNKADL +KR+V A++   YAE+NG+FF+ETSAKTA N+N +F EIAKRLPR
Sbjct:  104 WVQELQKQGNPNMVMALAGNKADLEDKRKVTAEEARLYAEENGLFFMETSAKTATNVNDIFYEIAKRLPR 173          
BLAST of CX047564 vs. ExPASy Swiss-Prot
Match: RHN1_NICPL (Ras-related protein RHN1 OS=Nicotiana plumbaginifolia GN=RHN1 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.024e-20
Identity = 46/70 (65.71%), Postives = 60/70 (85.71%), Query Frame = -2
Query:  286 WVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 495
            WV+ELQK G+P++VMAL GNKADL ++R+V A++   YAE+NG+FF+ETSAKTA N+N +F EIAKRLPR
Sbjct:  104 WVQELQKQGNPNMVMALAGNKADLEDRRKVTAEEARLYAEENGLFFMETSAKTAVNVNAIFYEIAKRLPR 173          
BLAST of CX047564 vs. ExPASy Swiss-Prot
Match: RAB5A_DICDI (Ras-related protein Rab-5A OS=Dictyostelium discoideum GN=rab5A PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.294e-19
Identity = 43/70 (61.43%), Postives = 57/70 (81.43%), Query Frame = -2
Query:  286 WVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 495
            WVKELQ+ GSP+IV+AL GNK DL  KR+V   +  +YAE+NG+ F+ETSAKT+ N+N+LF EIAK+LP+
Sbjct:  103 WVKELQRQGSPNIVIALAGNKLDLAAKRKVETAEAQQYAEENGLLFMETSAKTSQNVNELFVEIAKKLPK 172          
BLAST of CX047564 vs. ExPASy Swiss-Prot
Match: RHA1_ARATH (Ras-related protein RHA1 OS=Arabidopsis thaliana GN=RHA1 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 6.211e-18
Identity = 42/70 (60.00%), Postives = 56/70 (80.00%), Query Frame = -2
Query:  286 WVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 495
            WV+ELQ  G+P++VMAL GNKADL + R+V A++   YA++N +FF+ETSAKTA N+  +F EIAKRLPR
Sbjct:  104 WVQELQAQGNPNMVMALAGNKADLLDARKVSAEEAEIYAQENSLFFMETSAKTATNVKDIFYEIAKRLPR 173          
BLAST of CX047564 vs. ExPASy Swiss-Prot
Match: RAB5C_CHICK (Ras-related protein Rab-5C OS=Gallus gallus GN=RAB5C PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.083e-17
Identity = 42/70 (60.00%), Postives = 53/70 (75.71%), Query Frame = -2
Query:  286 WVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 495
            WVKELQ+  SP+IV+AL GNKADL  KR V  QD   YA+ N + F+ETSAKTA N+N++F  IAK+LP+
Sbjct:  115 WVKELQRQASPNIVIALAGNKADLATKRAVDFQDAQTYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPK 184          
BLAST of CX047564 vs. ExPASy Swiss-Prot
Match: RAB5C_BOVIN (Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.083e-17
Identity = 42/70 (60.00%), Postives = 53/70 (75.71%), Query Frame = -2
Query:  286 WVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 495
            WVKELQ+  SP+IV+AL GNKADL  KR V  Q+   YAE N + F+ETSAKTA N+N++F  IAK+LP+
Sbjct:  115 WVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYAEDNSLLFMETSAKTAMNVNEIFMAIAKKLPK 184          
BLAST of CX047564 vs. ExPASy Swiss-Prot
Match: RAB5C_PONAB (Ras-related protein Rab-5C OS=Pongo abelii GN=RAB5C PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 6.868e-17
Identity = 41/70 (58.57%), Postives = 53/70 (75.71%), Query Frame = -2
Query:  286 WVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 495
            WVKELQ+  SP+IV+AL GNKADL  KR V  Q+   YA+ N + F+ETSAKTA N+N++F  IAK+LP+
Sbjct:  115 WVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPK 184          
BLAST of CX047564 vs. ExPASy Swiss-Prot
Match: RAB5C_MOUSE (Ras-related protein Rab-5C OS=Mus musculus GN=Rab5c PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 6.868e-17
Identity = 41/70 (58.57%), Postives = 53/70 (75.71%), Query Frame = -2
Query:  286 WVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 495
            WVKELQ+  SP+IV+AL GNKADL  KR V  Q+   YA+ N + F+ETSAKTA N+N++F  IAK+LP+
Sbjct:  115 WVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPK 184          
BLAST of CX047564 vs. ExPASy Swiss-Prot
Match: RAB5C_HUMAN (Ras-related protein Rab-5C OS=Homo sapiens GN=RAB5C PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 6.868e-17
Identity = 41/70 (58.57%), Postives = 53/70 (75.71%), Query Frame = -2
Query:  286 WVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 495
            WVKELQ+  SP+IV+AL GNKADL  KR V  Q+   YA+ N + F+ETSAKTA N+N++F  IAK+LP+
Sbjct:  115 WVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPK 184          
BLAST of CX047564 vs. ExPASy Swiss-Prot
Match: RAB5C_CANFA (Ras-related protein Rab-5C OS=Canis familiaris GN=RAB5C PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 6.868e-17
Identity = 41/70 (58.57%), Postives = 53/70 (75.71%), Query Frame = -2
Query:  286 WVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 495
            WVKELQ+  SP+IV+AL GNKADL  KR V  Q+   YA+ N + F+ETSAKTA N+N++F  IAK+LP+
Sbjct:  115 WVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPK 184          
The following BLAST results are available for this feature:
BLAST of CX047564 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
RAB5_TOBAC2.063e-2167.14Ras-related protein Rab5 OS=Nicotiana tabacum GN=R... [more]
RHN1_NICPL1.024e-2065.71Ras-related protein RHN1 OS=Nicotiana plumbaginifo... [more]
RAB5A_DICDI3.294e-1961.43Ras-related protein Rab-5A OS=Dictyostelium discoi... [more]
RHA1_ARATH6.211e-1860.00Ras-related protein RHA1 OS=Arabidopsis thaliana G... [more]
RAB5C_CHICK3.083e-1760.00Ras-related protein Rab-5C OS=Gallus gallus GN=RAB... [more]
RAB5C_BOVIN3.083e-1760.00Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C ... [more]
RAB5C_PONAB6.868e-1758.57Ras-related protein Rab-5C OS=Pongo abelii GN=RAB5... [more]
RAB5C_MOUSE6.868e-1758.57Ras-related protein Rab-5C OS=Mus musculus GN=Rab5... [more]
RAB5C_HUMAN6.868e-1758.57Ras-related protein Rab-5C OS=Homo sapiens GN=RAB5... [more]
RAB5C_CANFA6.868e-1758.57Ras-related protein Rab-5C OS=Canis familiaris GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_14H06_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-14H06-P11-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047564 ID=CX047564; Name=CX047564; organism=Citrus sinensis; type=EST; length=505bp
TTTTTTTTTTTTTTTTTAAAAGGTAAAATAATCTATAATTCAACTCTTTG
GTTGCATCATTGCGGCGTCTAAATGTTTATATCACCCTTAAGATTTAAGG
TTGCAACAGAAAGTTTCCAAGTGAGATTCATAAATCATAATGCAGTTGCA
AAATGAAACAGGGAACCACATCATATATCACAATATACACAAATCTTTGA
TATGACAAACTGACAGGATTCGGCGTTACATCAGCAGACACAGCAGTTCA
GATTCCAGAATCCACAATCATGAAGAAGGTGATGGGCGGGGAAGTCGCTT
AGCAATTTCCTCAAACAGCTGATTTATATTATCTGCAGTCTTGGCCGATG
TTTCGATAAAGAACATCCCATTCTTCTCCGCATACTCAATGCCATCTTGA
GCTGGTACTTCTCGCTTCTCATGAAGATCAGCCTTGTTACCAACTAAAGC
CATGACTATGTCAGGACTTCCATGTTTTTGTAGCTCCTTAACCCAGTATT
GCCCT
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