CV712873

Overview
NameCV712873
Unique NameCV712873
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length723
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712873 vs. ExPASy Swiss-Prot
Match: PDR1_TOBAC (Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1)

HSP 1 Score: 285.419 bits (729), Expect = 2.080e-76
Identity = 137/226 (60.62%), Postives = 159/226 (70.35%), Query Frame = -1
Query:   46 KQQDLFNTMGFMYVAVYFLGVLNVSSVQPVVDLERSVFYREKGAGMYSPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKXXXXXXXXXXXXXXXXXFGMMLVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSYWANPIAWTLYGFFASQFGDVQDRLESGETVKQFLRSYYGFKHDFLGXXXXXVFVLPSLFAFVFALGIRVLNFQKR 723
            K QDL N MG MY AV FLGV N SSVQPVV +ER+VFYRE+ AGMYS + YAF QV IEIPYIFVQ+  Y +IVYAMIGFEW   K                 +GMM VA TPN ++ASIV+  FYG+WN+ SGFIIPR R+PVWWRW YWANP+AWTLYG  ASQFGD+Q +L   ETV+QFLR Y+GFKHDFLG     +     +FAF FA  I+  NFQ+R
Sbjct: 1209 KSQDLLNAMGSMYAAVLFLGVQNASSVQPVVAIERTVFYRERAAGMYSAIPYAFGQVSIEIPYIFVQSVFYGIIVYAMIGFEWDVGKFFWYLFIMFFTLLYFTFYGMMGVAVTPNQNVASIVAAFFYGVWNLFSGFIIPRPRMPVWWRWYYWANPVAWTLYGLVASQFGDIQTKLSDNETVEQFLRRYFGFKHDFLGVVAAVLTAYVFMFAFTFAFAIKAFNFQRR 1434          
BLAST of CV712873 vs. ExPASy Swiss-Prot
Match: PDR1_NICPL (Pleiotropic drug resistance protein 1 OS=Nicotiana plumbaginifolia GN=PDR1 PE=1 SV=1)

HSP 1 Score: 285.419 bits (729), Expect = 2.080e-76
Identity = 142/227 (62.56%), Postives = 163/227 (71.81%), Query Frame = -1
Query:   46 KQQDLFNTMGFMYVAVYFLGVLNVSSVQPVVDLERSVFYREKGAGMYSPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKXXXXXXXXXXXXXXXXXFGMMLVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSYWANPIAWTLYGFFASQFGDVQDRL-ESGETVKQFLRSYYGFKHDFLGXXXXXVFVLPSLFAFVFALGIRVLNFQKR 723
            + QDL N MG MY AV FLGV N SSVQPVV +ER+VFYREK AGMYS + YAFAQVLIEIPYIFVQA  Y LIVY+MIGFEWT AK                 FGMM VA TPN ++ASIV+  FY +WN+ SGFI+PR RIP+WWRW YW  PIAWTLYG  ASQFGD+QD L +  +TV+QFLRS +GFKHDFLG     +     +FAF FALGI+  NFQ+R
Sbjct: 1210 RNQDLVNAMGSMYAAVLFLGVQNSSSVQPVVSVERTVFYREKAAGMYSAIPYAFAQVLIEIPYIFVQATVYGLIVYSMIGFEWTVAKFFWDFFFMFFTFLYFTFFGMMTVAVTPNQNVASIVAGFFYTVWNLFSGFIVPRPRIPIWWRWYYWGCPIAWTLYGLVASQFGDLQDPLTDQNQTVEQFLRSNFGFKHDFLGVVAAVIVAFAVVFAFTFALGIKAFNFQRR 1436          
BLAST of CV712873 vs. ExPASy Swiss-Prot
Match: AB40G_ARATH (ABC transporter G family member 40 OS=Arabidopsis thaliana GN=ABCG40 PE=1 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 1.947e-74
Identity = 132/226 (58.41%), Postives = 161/226 (71.24%), Query Frame = -1
Query:   46 QQDLFNTMGFMYVAVYFLGVLNVSSVQPVVDLERSVFYREKGAGMYSPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKXXXXXXXXXXXXXXXXXFGMMLVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSYWANPIAWTLYGFFASQFGDVQDRL-ESGETVKQFLRSYYGFKHDFLGXXXXXVFVLPSLFAFVFALGIRVLNFQKR 720
            +QDL N MG MY AV FLG+ N +SVQPVV++ER+VFYRE+ AGMYS M YAFAQV IEIPY+ VQA  Y LIVYAMIGFEWTA K                 +GMM VA TPNHHIAS+VS+ FYG+WN+ SGF+IPR  +PVWW W YW  P+AWTLYG  ASQFGD+ + + +S  +VKQF+R +YG++  FLG       + P LFA +FA+GI+  NFQKR
Sbjct: 1198 RQDLSNAMGSMYTAVLFLGLQNAASVQPVVNVERTVFYREQAAGMYSAMPYAFAQVFIEIPYVLVQAIVYGLIVYAMIGFEWTAVKFFWYLFFMYGSFLTFTFYGMMAVAMTPNHHIASVVSSAFYGIWNLFSGFLIPRPSMPVWWEWYYWLCPVAWTLYGLIASQFGDITEPMADSNMSVKQFIREFYGYREGFLGVVAAMNVIFPLLFAVIFAIGIKSFNFQKR 1423          
BLAST of CV712873 vs. ExPASy Swiss-Prot
Match: PDR3_ORYSJ (Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. japonica GN=PDR3 PE=2 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 9.042e-72
Identity = 129/226 (57.08%), Postives = 154/226 (68.14%), Query Frame = -1
Query:   46 KQQDLFNTMGFMYVAVYFLGVLNVSSVQPVVDLERSVFYREKGAGMYSPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKXXXXXXXXXXXXXXXXXFGMMLVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSYWANPIAWTLYGFFASQFGDVQDRLESGETVKQFLRSYYGFKHDFLGXXXXXVFVLPSLFAFVFALGIRVLNFQKR 723
            K QDLFN MG MY AV F+GV+N +SVQPVV +ER+VFYRE+ AGMYS   YAF QV+IEIPY  VQA  Y +IVYAMIGFEWTAAK                 +GMM V  TPN+HIASIVS+ FY +WN+ SGF+IPR R+P+WWRW  WA P+AWTLYG   SQFGD++  +E G  VK F+ +Y+GFKH +LG     V     LFA +F   I   NFQKR
Sbjct: 1232 KSQDLFNAMGSMYAAVLFIGVMNCTSVQPVVAVERTVFYRERAAGMYSAFPYAFGQVVIEIPYTLVQATVYGIIVYAMIGFEWTAAKFFWYLFFMVFTLLYFTFYGMMAVGLTPNYHIASIVSSAFYAIWNLFSGFVIPRPRVPIWWRWYCWACPVAWTLYGLVVSQFGDIETPMEDGTPVKVFVENYFGFKHSWLGWVATVVAAFAFLFASLFGFAIMKFNFQKR 1457          
BLAST of CV712873 vs. ExPASy Swiss-Prot
Match: PDR3_ORYSI (Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. indica GN=PDR3 PE=2 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 9.042e-72
Identity = 129/226 (57.08%), Postives = 154/226 (68.14%), Query Frame = -1
Query:   46 KQQDLFNTMGFMYVAVYFLGVLNVSSVQPVVDLERSVFYREKGAGMYSPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKXXXXXXXXXXXXXXXXXFGMMLVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSYWANPIAWTLYGFFASQFGDVQDRLESGETVKQFLRSYYGFKHDFLGXXXXXVFVLPSLFAFVFALGIRVLNFQKR 723
            K QDLFN MG MY AV F+GV+N +SVQPVV +ER+VFYRE+ AGMYS   YAF QV+IEIPY  VQA  Y +IVYAMIGFEWTAAK                 +GMM V  TPN+HIASIVS+ FY +WN+ SGF+IPR R+P+WWRW  WA P+AWTLYG   SQFGD++  +E G  VK F+ +Y+GFKH +LG     V     LFA +F   I   NFQKR
Sbjct: 1232 KSQDLFNAMGSMYAAVLFIGVMNCTSVQPVVAVERTVFYRERAAGMYSAFPYAFGQVVIEIPYTLVQATVYGIIVYAMIGFEWTAAKFFWYLFFMVFTLLYFTFYGMMAVGLTPNYHIASIVSSAFYAIWNLFSGFVIPRPRVPIWWRWYCWACPVAWTLYGLVVSQFGDIETPMEDGTPVKVFVENYFGFKHSWLGWVATVVAAFAFLFASLFGFAIMKFNFQKR 1457          
BLAST of CV712873 vs. ExPASy Swiss-Prot
Match: PDR7_ORYSJ (Putative pleiotropic drug resistance protein 7 OS=Oryza sativa subsp. japonica GN=PDR7 PE=3 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 2.014e-71
Identity = 128/227 (56.39%), Postives = 161/227 (70.93%), Query Frame = -1
Query:   46 KQQDLFNTMGFMYVAVYFLGVLNVSSVQPVVDLERSVFYREKGAGMYSPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKXXXXXXXXXXXXXXXXXFGMMLVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSYWANPIAWTLYGFFASQFGDV-QDRLESGETVKQFLRSYYGFKHDFLGXXXXXVFVLPSLFAFVFALGIRVLNFQKR 723
            K+ DLFN++G MY AV F+G+ N  +VQP+VD+ER+VFYREK AGMYS + YAFAQVLIEIP+IF+Q   Y LIVY++IGF+WT  K                 +GMM VA TPN  IA+IVST FY +WNI +GF+IPR RIP+WWRW  WA P+AWTLYG  ASQ+GD+    LE GE V+ ++R Y+GF+HD+LG     V    +LFAFVFA  I+V NFQ+R
Sbjct: 1218 KRLDLFNSLGSMYAAVLFIGIQNGQTVQPIVDVERTVFYREKAAGMYSALPYAFAQVLIEIPHIFLQTVVYGLIVYSLIGFDWTVEKFFWYMFFMFFTFMYFTFYGMMAVAMTPNSDIAAIVSTAFYCIWNIFAGFLIPRPRIPIWWRWYSWACPVAWTLYGLVASQYGDITNSTLEDGEVVQDYIRRYFGFRHDYLGYVATAVVGFAALFAFVFAFSIKVFNFQRR 1444          
BLAST of CV712873 vs. ExPASy Swiss-Prot
Match: PDR2_ORYSJ (Probable pleiotropic drug resistance protein 2 OS=Oryza sativa subsp. japonica GN=PDR2 PE=3 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 1.885e-69
Identity = 124/226 (54.87%), Postives = 152/226 (67.26%), Query Frame = -1
Query:   46 KQQDLFNTMGFMYVAVYFLGVLNVSSVQPVVDLERSVFYREKGAGMYSPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKXXXXXXXXXXXXXXXXXFGMMLVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSYWANPIAWTLYGFFASQFGDVQDRLESGETVKQFLRSYYGFKHDFLGXXXXXVFVLPSLFAFVFALGIRVLNFQKR 723
            K QDLFN MG MY AV F+GVLN  SVQPVV +ER+VFYRE+ AGMYS   YAF QV IE PY  VQ+  Y +IVY+MIGF+WTAAK                 +GMM V  TP++H+ASIVS+ FYG+WN+ SGFIIPR ++P+WWRW  W  P+AWTLYG  ASQFGD+   ++ G  VK F+ +Y+ FKH +LG     +     LFAF+F   I  LNFQKR
Sbjct: 1239 KSQDLFNAMGSMYSAVLFIGVLNSQSVQPVVSVERTVFYRERAAGMYSAFPYAFGQVAIEFPYTLVQSIIYGIIVYSMIGFKWTAAKFFWYLFFMFFTFLYFTFYGMMAVGLTPSYHVASIVSSAFYGIWNLFSGFIIPRPKVPIWWRWYCWICPVAWTLYGLVASQFGDIMTPMDDGTPVKIFVENYFDFKHSWLGVVAVVIVAFTMLFAFLFGFAIMKLNFQKR 1464          
BLAST of CV712873 vs. ExPASy Swiss-Prot
Match: TUR2_SPIPO (Pleiotropic drug resistance protein TUR2 OS=Spirodela polyrrhiza GN=TUR2 PE=1 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 4.200e-69
Identity = 126/224 (56.25%), Postives = 154/224 (68.75%), Query Frame = -1
Query:   46 DLFNTMGFMYVAVYFLGVLNVSSVQPVVDLERSVFYREKGAGMYSPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKXXXXXXXXXXXXXXXXXFGMMLVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSYWANPIAWTLYGFFASQFGDVQDRL-ESGETVKQFLRSYYGFKHDFLGXXXXXVFVLPSLFAFVFALGIRVLNFQKR 714
            DL N MG MY AV F+G+ N  +VQP+VD+ER+VFYREK AGMYS + YA+AQVLIE+P+I VQ   Y L+VY+MIGF+WTAAK                 +GMM VA TPN  IA+IV+  FY +WNI +GFIIPR RIP+WWRW YWA P+AWTLYG   SQFG+  D + +  ETVK FLR + GF+HDFL      V V   LFA +FA  I+ LNFQ+R
Sbjct: 1218 DLINAMGSMYAAVLFIGIQNAQTVQPIVDVERTVFYREKAAGMYSALPYAYAQVLIEVPHILVQTLLYGLLVYSMIGFDWTAAKFLWYMFFMFFTFLYFTYYGMMAVAMTPNSDIAAIVAAAFYAIWNIFAGFIIPRPRIPIWWRWYYWACPVAWTLYGLVVSQFGEYTDTMSDVDETVKDFLRRFLGFRHDFLPVVGVMVVVFTVLFASIFAFSIKTLNFQRR 1441          
BLAST of CV712873 vs. ExPASy Swiss-Prot
Match: PDR4_ORYSJ (Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.265e-65
Identity = 122/227 (53.74%), Postives = 148/227 (65.20%), Query Frame = -1
Query:   46 KQQDLFNTMGFMYVAVYFLGVLNVSSVQPVVDLERSVFYREKGAGMYSPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKXXXXXXXXXXXXXXXXXFGMMLVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSYWANPIAWTLYGFFASQFGDVQDRLESG-ETVKQFLRSYYGFKHDFLGXXXXXVFVLPSLFAFVFALGIRVLNFQKR 723
            KQQDLFN MG MY AV ++GV N  SVQPVV +ER+VFYRE+ AGMYS   YAF QV IE+PYI VQ   Y ++VY+MIGFEWT AK                 +GMM V  TPN  IA+I+S+ FY +WN+ SG++IPR +IPVWWRW  W  P+AWTLYG  ASQFGD+Q  LE    TV QF+  Y+GF H+FL        V    FAF+F+  I   NFQ+R
Sbjct: 1224 KQQDLFNAMGSMYAAVLYIGVQNSGSVQPVVVVERTVFYRERAAGMYSAFPYAFGQVAIELPYIMVQTLIYGVLVYSMIGFEWTVAKFLWYLFFMYFTLLYFTFYGMMAVGLTPNESIAAIISSAFYNVWNLFSGYLIPRPKIPVWWRWYCWICPVAWTLYGLVASQFGDIQHVLEGDTRTVAQFVTDYFGFHHNFLWVVAVVHVVFAVTFAFLFSFAIMKFNFQRR 1450          
BLAST of CV712873 vs. ExPASy Swiss-Prot
Match: PDR1_ORYSJ (Probable pleiotropic drug resistance protein 1 OS=Oryza sativa subsp. japonica GN=PDR1 PE=3 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 3.680e-65
Identity = 117/226 (51.77%), Postives = 147/226 (65.04%), Query Frame = -1
Query:   46 KQQDLFNTMGFMYVAVYFLGVLNVSSVQPVVDLERSVFYREKGAGMYSPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKXXXXXXXXXXXXXXXXXFGMMLVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSYWANPIAWTLYGFFASQFGDVQDRLESGETVKQFLRSYYGFKHDFLGXXXXXVFVLPSLFAFVFALGIRVLNFQKR 723
            + QDLFN MG MY AV F+GVLN  SVQPVV +ER+VFYRE+ AGMYS + YAF QV IE PY  VQ+  YS+IVY+MIGF+WT AK                 +GMM V  TP++H+ASIVS+ FY +WN+ +GF+I R   PVWWRW  W  P+AWTLYG   SQ+GD+   ++ G  V  F+ +Y+ FKH +LG     +     LFAF+F   I  LNFQKR
Sbjct: 1243 QSQDLFNAMGSMYAAVLFIGVLNGQSVQPVVSVERTVFYRERAAGMYSALPYAFGQVAIEFPYTLVQSVIYSIIVYSMIGFQWTVAKFFWYLFFMFFTLLYFTFYGMMAVGLTPSYHVASIVSSAFYAIWNLFTGFVISRPATPVWWRWYCWICPVAWTLYGLIVSQYGDIVTPMDDGIPVNVFVENYFDFKHSWLGFVAVVIVAFTMLFAFLFGFAIMKLNFQKR 1468          
The following BLAST results are available for this feature:
BLAST of CV712873 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
PDR1_TOBAC2.080e-7660.62Pleiotropic drug resistance protein 1 OS=Nicotiana... [more]
PDR1_NICPL2.080e-7662.56Pleiotropic drug resistance protein 1 OS=Nicotiana... [more]
AB40G_ARATH1.947e-7458.41ABC transporter G family member 40 OS=Arabidopsis ... [more]
PDR3_ORYSJ9.042e-7257.08Pleiotropic drug resistance protein 3 OS=Oryza sat... [more]
PDR3_ORYSI9.042e-7257.08Pleiotropic drug resistance protein 3 OS=Oryza sat... [more]
PDR7_ORYSJ2.014e-7156.39Putative pleiotropic drug resistance protein 7 OS=... [more]
PDR2_ORYSJ1.885e-6954.87Probable pleiotropic drug resistance protein 2 OS=... [more]
TUR2_SPIPO4.200e-6956.25Pleiotropic drug resistance protein TUR2 OS=Spirod... [more]
PDR4_ORYSJ1.265e-6553.74Pleiotropic drug resistance protein 4 OS=Oryza sat... [more]
PDR1_ORYSJ3.680e-6551.77Probable pleiotropic drug resistance protein 1 OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_0002A06_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0002A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712873 ID=CV712873; Name=CV712873; organism=Citrus sinensis; type=EST; length=723bp
CTGATCCAACGTGCAATAGTTTATAGGAAAAAAAAAAATTTTCTATCGCT
TTTGGAAGTTAAGCACCCTAATTCCTAAAGCAAAGACAAAAGCAAAAAGC
GATGGCAATACAAAAACAACAGCTGCAACAGCTCCTAGAAAATCATGTTT
GAAGCCATAATAACTTCTCAAAAACTGTTTCACTGTTTCACCTGACTCAA
GCCTATCTTGTACATCTCCAAACTGTGATGCAAAAAATCCATACAATGTC
CAAGCTATAGGGTTTGCCCAGTAGGACCATCTCCACCATACAGGAATCCT
TGTTCTGGGGATAATGAACCCTGAAACGATGTTCCATAATCCGTAAAATA
AAGTTGATACAATGCTAGCAATGTGGTGGTTTGGCGTCCAAGCCACAAGC
ATCATGCCAAAGAATGTGAAGTACAACAAGCTGAAGAACATGAAGAATAA
AAACCAAAAGAATTTCGCGGCAGTCCATTCGAATCCAATCATTGCATAGA
CTATAAGACTATATGGTGCAGCTTGAACAAATATATAAGGGATCTCAATT
AAAACTTGTGCAAAGGCATATGCCATGGGTGAATACATTCCGGCACCTTT
TTCTCTGTAGAAGACTGATCTTTCAAGATCTACTACTGGCTGCACTGACG
AAACATTTAGGACACCAAGGAAGTAAACGGCAACATACATGAAGCCCATT
GTATTAAACAGATCTTGTTGCTT
back to top