CV712871

Overview
NameCV712871
Unique NameCV712871
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length776
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: RH1_ARATH (DEAD-box ATP-dependent RNA helicase 1 OS=Arabidopsis thaliana GN=RH1 PE=2 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 3.517e-40
Identity = 80/123 (65.04%), Postives = 98/123 (79.67%), Query Frame = -2
Query:  404 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSALDKLKETVESEAHRKHTIGFK 772
            LKAFR+G IQVLV+SDA+TRGMDV+GV NV+NYD P + KT+IHRAGRTARAGQ GRCFTLL   EV+RF KLL+K  +DSCPI+ IP + ++S+R  Y  AL+KLKE VESEA +K    F+
Sbjct:  371 LKAFRKGDIQVLVASDALTRGMDVKGVTNVINYDMPPFAKTFIHRAGRTARAGQAGRCFTLLSNHEVRRFSKLLEKVGSDSCPIYPIPPTSLDSIRATYTPALEKLKELVESEAPKKGRQAFR 493          
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: RH1_ORYSJ (DEAD-box ATP-dependent RNA helicase 1 OS=Oryza sativa subsp. japonica GN=Os02g0795900 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 8.663e-39
Identity = 76/134 (56.72%), Postives = 98/134 (73.13%), Query Frame = -2
Query:  374 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSALDKLKETVESEAHRKHTIGFKLSRMGKGRVT 775
            TL AF+EGKI VL+ +D M RG+ ++G+  V+NYD P Y+KTYIHRAGRTARAG+ G CFT L K EVK F K+L+KADN SC +HS+P   +E+LRPV+ SAL KL+E++ESEA +K   G K     K + T
Sbjct:  385 TLDAFKEGKIDVLIGTDRMARGIHIDGLRYVINYDMPPYVKTYIHRAGRTARAGESGSCFTFLRKHEVKAFDKMLKKADNSSCSLHSLPEESVETLRPVFSSALKKLEESLESEATKKSKSGDKAPNASKRKRT 518          
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: DDX51_HUMAN (ATP-dependent RNA helicase DDX51 OS=Homo sapiens GN=DDX51 PE=1 SV=3)

HSP 1 Score: 119.398 bits (298), Expect = 2.213e-26
Identity = 57/117 (48.72%), Postives = 83/117 (70.94%), Query Frame = -2
Query:  422 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSALDKLKETVESEAHRK 772
            LK F +GKIQ+L+S+DA  RG+DV+GV  VVNYD P Y++TY+HR GRTARAG+ G+ FTLL K + +RF ++L +A       H + S L++ L P Y+ AL +L+E+V+ E  ++
Sbjct:  548 LKQFEQGKIQLLISTDATARGIDVQGVELVVNYDAPQYLRTYVHRVGRTARAGKTGQAFTLLLKVQERRFLRMLTEAGAPELQRHELSSKLLQPLVPRYEEALSQLEESVKEERKQR 664          
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: DDX51_MOUSE (ATP-dependent RNA helicase DDX51 OS=Mus musculus GN=Ddx51 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.196e-25
Identity = 55/117 (47.01%), Postives = 82/117 (70.09%), Query Frame = -2
Query:  422 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSALDKLKETVESEAHRK 772
            LK F +GKIQ+L+S+DA  RG+DV+GV  V+NYD P Y++TY+HR GRTARAG+ G+ FTLL K + ++F +++ +A       H IP  L++ L   Y++AL +L++TV+ E   K
Sbjct:  521 LKQFEQGKIQLLISTDATARGIDVQGVELVINYDAPQYLRTYVHRVGRTARAGKTGQAFTLLLKVQERKFLQMVSEAGVPELTHHEIPRKLLQPLVARYETALSQLEKTVKEEQKLK 637          
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: DDX51_DANRE (ATP-dependent RNA helicase DDX51 OS=Danio rerio GN=ddx51 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.257e-21
Identity = 52/118 (44.07%), Postives = 73/118 (61.86%), Query Frame = -2
Query:  422 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSALDKLKETVESEAHRK 775
            TLK F +GKI +L+S+DA  RG+D+ GV  V+NYD P YI+TYIHR GRTARAG+ G  FT L K + KRF K++  A +       +    ++S+   Y+  L +L   V+ E  +K
Sbjct:  533 TLKDFEKGKIPLLISTDAAARGIDINGVKCVINYDAPQYIRTYIHRVGRTARAGKAGLAFTFLLKVQEKRFLKMVSDAGSPGIQKQHVHPEALKSMESRYEQVLAELGTIVKEENEKK 650          
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: DBP6_ASPNC (ATP-dependent RNA helicase dbp6 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=dbp6 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.590e-16
Identity = 48/119 (40.34%), Postives = 73/119 (61.34%), Query Frame = -2
Query:  437 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADND----SCPIHSIPSSL--IESLRPVYKSALDKLKETVES 775
            TL A+R GKI V++++D  +RG+D+  + +VVNYD PA I TY+HR GRTARAGQ G  +TL+   E K F   + K  +     S  +  +   L  ++ ++  Y SALD L++ V++
Sbjct:  464 TLTAYRRGKISVIIATDRASRGLDLRSLTHVVNYDVPASITTYVHRVGRTARAGQKGSAWTLVAHREGKWFASQIAKGSDGKITRSTKVGKVQFKLDNMKEVKARYASALDLLEKEVKT 582          
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: DRS1_CRYNE (ATP-dependent RNA helicase DRS1 OS=Cryptococcus neoformans GN=DRS1 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.030e-15
Identity = 39/117 (33.33%), Postives = 68/117 (58.12%), Query Frame = -2
Query:  422 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSALDKLKETVESEAHRK 772
            L  F+ G +  L+++D  +RG+D++GV  V+NYD P  +  Y HR GRTARAG+ GR  +L+ + + K  K  +++A+ D      IPS  + +++   +   D ++E ++ E   K
Sbjct:  512 LNDFKAGTVDYLLATDLASRGLDIKGVETVINYDMPGQLAQYTHRVGRTARAGRKGRSVSLVGEADRKMLKAAIKQAEADQVRHRIIPSEAVTAMKEKLEEFKDDIQEILKEEKEEK 628          
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: DRS1_USTMA (ATP-dependent RNA helicase DRS1 OS=Ustilago maydis GN=DRS1 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.916e-15
Identity = 42/115 (36.52%), Postives = 68/115 (59.13%), Query Frame = -2
Query:  449 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSL-------IESLRPVYKSALDKLKE 772
            L  FR+GK   L+++D  +RG+D++GV  V+NYD P   + Y+HR GRTARAG+ GR  TL+ + + +  K  ++K+  +      IPS++       +E L+P   + L + KE
Sbjct:  654 LTDFRDGKTDFLLATDLASRGLDIKGVQTVINYDMPGQFEAYLHRVGRTARAGRNGRAVTLVGEADRRMLKLAIKKSSAEQIKHRIIPSAVAAHMCETLERLKPEVDAVLREEKE 768          
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: DDX51_DICDI (Probable ATP-dependent RNA helicase ddx51 OS=Dictyostelium discoideum GN=ddx51 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.114e-15
Identity = 39/109 (35.78%), Postives = 69/109 (63.30%), Query Frame = -2
Query:  452 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSI--PSSLIESLRPVYKSALDKLK 772
            L  F+  +I +L+ SD M+RGMD++ ++ V+NY+ P  I  Y+HR GRTARAG  G  +T++ K E+K +  +++KA+  S  +H +    ++ E  +  YK  L++++
Sbjct:  375 LSRFKLNQIDILICSDIMSRGMDIQDIDVVINYNTPPNITLYVHRVGRTARAGNFGVSYTIVDKSEIKYYISMMKKAER-SQTLHCLKWKPNVYEKFQSSYKLGLNQMR 482          
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: DDX27_HUMAN (Probable ATP-dependent RNA helicase DDX27 OS=Homo sapiens GN=DDX27 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.139e-14
Identity = 42/117 (35.90%), Postives = 67/117 (57.26%), Query Frame = -2
Query:  422 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSALDKLKETVESEAHRK 772
            L+ F++ +I +LV++D   RG+D+EGV  V+N+  P  IK Y+HR GRTARAG+ GR  +L+ +DE K  K+++ KA         +P  +I   R   +     +   ++ EA  K
Sbjct:  506 LRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEIV-KAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEK 621          
The following BLAST results are available for this feature:
BLAST of CV712871 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 168
Match NameE-valueIdentityDescription
RH1_ARATH3.517e-4065.04DEAD-box ATP-dependent RNA helicase 1 OS=Arabidops... [more]
RH1_ORYSJ8.663e-3956.72DEAD-box ATP-dependent RNA helicase 1 OS=Oryza sat... [more]
DDX51_HUMAN2.213e-2648.72ATP-dependent RNA helicase DDX51 OS=Homo sapiens G... [more]
DDX51_MOUSE3.196e-2547.01ATP-dependent RNA helicase DDX51 OS=Mus musculus G... [more]
DDX51_DANRE1.257e-2144.07ATP-dependent RNA helicase DDX51 OS=Danio rerio GN... [more]
DBP6_ASPNC1.590e-1640.34ATP-dependent RNA helicase dbp6 OS=Aspergillus nig... [more]
DRS1_CRYNE1.030e-1533.33ATP-dependent RNA helicase DRS1 OS=Cryptococcus ne... [more]
DRS1_USTMA3.916e-1536.52ATP-dependent RNA helicase DRS1 OS=Ustilago maydis... [more]
DDX51_DICDI5.114e-1535.78Probable ATP-dependent RNA helicase ddx51 OS=Dicty... [more]
DDX27_HUMAN1.139e-1435.90Probable ATP-dependent RNA helicase DDX27 OS=Homo ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0002A05_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0002A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712871 ID=CV712871; Name=CV712871; organism=Citrus sinensis; type=EST; length=776bp
GAAGTTTGTAATATACACGTTTGTTACTTTACAGAGCCACAAGGTCACAA
CAAAATTATGTTCACAAGCTATCACAATGCCTCTAATCTTACATTTCCTA
CCTGTTGTACAAAAATGTAATACATTGGCAACTGTTTGCTTTTAATATTA
ACAAAACTTCAATAAGCTAAATGATGTTGTCCGGCATTTGTCTGCTGGAA
CGAGAAATAGAAGAACTGATCAGGAAAAGGTACCAAGTCCTAAGCTCTGA
CATATTGATCAACTCTTGCAATTTGCTCAACGATGAAGAGTGTTTGCACT
TGCACTCGATAGTATCGCACCCATAATTATCCTAATAGTCAGAACATTGG
ATAAATTACTGCTTTGCATGGCCTGTTACTCTGCCTTTGCCCATTCTTGA
TAGCTTGAACCCAATTGTGTGCTTTCTGTGCGCTTCTGATTCAACTGTCT
CTTTTAACTTGTCTAGAGCAGATTTATAAACTGGACGGAGTGACTCAATC
AAACTGGAAGGGATAGAGTGAATGGGACAGGAGTCATTGTCAGCTTTCTG
TAACAGCTTCTTGAAACGCTTCACCTCATCCTTATGCAACAAAGTGAAGC
AACGCCCAAGCTGGCCAGCTCTTGCAGTTCGGCCAGCACGATGAATATAT
GTCTTGATATATGCAGGCTTATCATAATTAACGACATTGTTCACCCCTTC
AACATCCATCCCGCGAGTCATTGCATCTGAGGAAACAAGCACTTGTATCT
TCCCTTCCCGAAATGCCTTCAACGTC
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