CV712871
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: RH1_ARATH (DEAD-box ATP-dependent RNA helicase 1 OS=Arabidopsis thaliana GN=RH1 PE=2 SV=2) HSP 1 Score: 165.236 bits (417), Expect = 3.517e-40 Identity = 80/123 (65.04%), Postives = 98/123 (79.67%), Query Frame = -2 Query: 404 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSALDKLKETVESEAHRKHTIGFK 772 LKAFR+G IQVLV+SDA+TRGMDV+GV NV+NYD P + KT+IHRAGRTARAGQ GRCFTLL EV+RF KLL+K +DSCPI+ IP + ++S+R Y AL+KLKE VESEA +K F+ Sbjct: 371 LKAFRKGDIQVLVASDALTRGMDVKGVTNVINYDMPPFAKTFIHRAGRTARAGQAGRCFTLLSNHEVRRFSKLLEKVGSDSCPIYPIPPTSLDSIRATYTPALEKLKELVESEAPKKGRQAFR 493
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: RH1_ORYSJ (DEAD-box ATP-dependent RNA helicase 1 OS=Oryza sativa subsp. japonica GN=Os02g0795900 PE=2 SV=1) HSP 1 Score: 160.614 bits (405), Expect = 8.663e-39 Identity = 76/134 (56.72%), Postives = 98/134 (73.13%), Query Frame = -2 Query: 374 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSALDKLKETVESEAHRKHTIGFKLSRMGKGRVT 775 TL AF+EGKI VL+ +D M RG+ ++G+ V+NYD P Y+KTYIHRAGRTARAG+ G CFT L K EVK F K+L+KADN SC +HS+P +E+LRPV+ SAL KL+E++ESEA +K G K K + T Sbjct: 385 TLDAFKEGKIDVLIGTDRMARGIHIDGLRYVINYDMPPYVKTYIHRAGRTARAGESGSCFTFLRKHEVKAFDKMLKKADNSSCSLHSLPEESVETLRPVFSSALKKLEESLESEATKKSKSGDKAPNASKRKRT 518
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: DDX51_HUMAN (ATP-dependent RNA helicase DDX51 OS=Homo sapiens GN=DDX51 PE=1 SV=3) HSP 1 Score: 119.398 bits (298), Expect = 2.213e-26 Identity = 57/117 (48.72%), Postives = 83/117 (70.94%), Query Frame = -2 Query: 422 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSALDKLKETVESEAHRK 772 LK F +GKIQ+L+S+DA RG+DV+GV VVNYD P Y++TY+HR GRTARAG+ G+ FTLL K + +RF ++L +A H + S L++ L P Y+ AL +L+E+V+ E ++ Sbjct: 548 LKQFEQGKIQLLISTDATARGIDVQGVELVVNYDAPQYLRTYVHRVGRTARAGKTGQAFTLLLKVQERRFLRMLTEAGAPELQRHELSSKLLQPLVPRYEEALSQLEESVKEERKQR 664
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: DDX51_MOUSE (ATP-dependent RNA helicase DDX51 OS=Mus musculus GN=Ddx51 PE=2 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 3.196e-25 Identity = 55/117 (47.01%), Postives = 82/117 (70.09%), Query Frame = -2 Query: 422 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSALDKLKETVESEAHRK 772 LK F +GKIQ+L+S+DA RG+DV+GV V+NYD P Y++TY+HR GRTARAG+ G+ FTLL K + ++F +++ +A H IP L++ L Y++AL +L++TV+ E K Sbjct: 521 LKQFEQGKIQLLISTDATARGIDVQGVELVINYDAPQYLRTYVHRVGRTARAGKTGQAFTLLLKVQERKFLQMVSEAGVPELTHHEIPRKLLQPLVARYETALSQLEKTVKEEQKLK 637
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: DDX51_DANRE (ATP-dependent RNA helicase DDX51 OS=Danio rerio GN=ddx51 PE=2 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.257e-21 Identity = 52/118 (44.07%), Postives = 73/118 (61.86%), Query Frame = -2 Query: 422 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSALDKLKETVESEAHRK 775 TLK F +GKI +L+S+DA RG+D+ GV V+NYD P YI+TYIHR GRTARAG+ G FT L K + KRF K++ A + + ++S+ Y+ L +L V+ E +K Sbjct: 533 TLKDFEKGKIPLLISTDAAARGIDINGVKCVINYDAPQYIRTYIHRVGRTARAGKAGLAFTFLLKVQEKRFLKMVSDAGSPGIQKQHVHPEALKSMESRYEQVLAELGTIVKEENEKK 650
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: DBP6_ASPNC (ATP-dependent RNA helicase dbp6 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=dbp6 PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.590e-16 Identity = 48/119 (40.34%), Postives = 73/119 (61.34%), Query Frame = -2 Query: 437 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADND----SCPIHSIPSSL--IESLRPVYKSALDKLKETVES 775 TL A+R GKI V++++D +RG+D+ + +VVNYD PA I TY+HR GRTARAGQ G +TL+ E K F + K + S + + L ++ ++ Y SALD L++ V++ Sbjct: 464 TLTAYRRGKISVIIATDRASRGLDLRSLTHVVNYDVPASITTYVHRVGRTARAGQKGSAWTLVAHREGKWFASQIAKGSDGKITRSTKVGKVQFKLDNMKEVKARYASALDLLEKEVKT 582
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: DRS1_CRYNE (ATP-dependent RNA helicase DRS1 OS=Cryptococcus neoformans GN=DRS1 PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 1.030e-15 Identity = 39/117 (33.33%), Postives = 68/117 (58.12%), Query Frame = -2 Query: 422 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSALDKLKETVESEAHRK 772 L F+ G + L+++D +RG+D++GV V+NYD P + Y HR GRTARAG+ GR +L+ + + K K +++A+ D IPS + +++ + D ++E ++ E K Sbjct: 512 LNDFKAGTVDYLLATDLASRGLDIKGVETVINYDMPGQLAQYTHRVGRTARAGRKGRSVSLVGEADRKMLKAAIKQAEADQVRHRIIPSEAVTAMKEKLEEFKDDIQEILKEEKEEK 628
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: DRS1_USTMA (ATP-dependent RNA helicase DRS1 OS=Ustilago maydis GN=DRS1 PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.916e-15 Identity = 42/115 (36.52%), Postives = 68/115 (59.13%), Query Frame = -2 Query: 449 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSL-------IESLRPVYKSALDKLKE 772 L FR+GK L+++D +RG+D++GV V+NYD P + Y+HR GRTARAG+ GR TL+ + + + K ++K+ + IPS++ +E L+P + L + KE Sbjct: 654 LTDFRDGKTDFLLATDLASRGLDIKGVQTVINYDMPGQFEAYLHRVGRTARAGRNGRAVTLVGEADRRMLKLAIKKSSAEQIKHRIIPSAVAAHMCETLERLKPEVDAVLREEKE 768
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: DDX51_DICDI (Probable ATP-dependent RNA helicase ddx51 OS=Dictyostelium discoideum GN=ddx51 PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 5.114e-15 Identity = 39/109 (35.78%), Postives = 69/109 (63.30%), Query Frame = -2 Query: 452 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSI--PSSLIESLRPVYKSALDKLK 772 L F+ +I +L+ SD M+RGMD++ ++ V+NY+ P I Y+HR GRTARAG G +T++ K E+K + +++KA+ S +H + ++ E + YK L++++ Sbjct: 375 LSRFKLNQIDILICSDIMSRGMDIQDIDVVINYNTPPNITLYVHRVGRTARAGNFGVSYTIVDKSEIKYYISMMKKAER-SQTLHCLKWKPNVYEKFQSSYKLGLNQMR 482
BLAST of CV712871 vs. ExPASy Swiss-Prot
Match: DDX27_HUMAN (Probable ATP-dependent RNA helicase DDX27 OS=Homo sapiens GN=DDX27 PE=1 SV=2) HSP 1 Score: 80.4925 bits (197), Expect = 1.139e-14 Identity = 42/117 (35.90%), Postives = 67/117 (57.26%), Query Frame = -2 Query: 422 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSALDKLKETVESEAHRK 772 L+ F++ +I +LV++D RG+D+EGV V+N+ P IK Y+HR GRTARAG+ GR +L+ +DE K K+++ KA +P +I R + + ++ EA K Sbjct: 506 LRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEIV-KAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEK 621 The following BLAST results are available for this feature:
BLAST of CV712871 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 168
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Sequences
The
following sequences are available for this feature:
EST sequence >CV712871 ID=CV712871; Name=CV712871; organism=Citrus sinensis; type=EST; length=776bpback to top |