CX047518

Overview
NameCX047518
Unique NameCX047518
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length486
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047518 vs. ExPASy Swiss-Prot
Match: RLA01_ARATH (60S acidic ribosomal protein P0-1 OS=Arabidopsis thaliana GN=RPP0A PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 4.478e-28
Identity = 67/108 (62.04%), Postives = 76/108 (70.37%), Query Frame = -3
Query:  158 EDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDGDMGFSLF 481
            EDDLVEKFA+GVSM+TAL+LAISYPT+AAAPHMF+NAYKNV+AVALATEYSFPQA+ VKE+L DP+KF                             ESDGDMGF LF
Sbjct:  211 EDDLVEKFAAGVSMITALSLAISYPTVAAAPHMFLNAYKNVLAVALATEYSFPQAENVKEFLKDPTKF--AVAVAAPVSGESGGAVVAVAVEEEAAEESDGDMGFDLF 316          
BLAST of CX047518 vs. ExPASy Swiss-Prot
Match: RLA0_SOYBN (60S acidic ribosomal protein P0 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 7.638e-28
Identity = 67/110 (60.91%), Postives = 76/110 (69.09%), Query Frame = -3
Query:  155 EDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKF-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDGDMGFSLFD 481
            EDDL+ KFA+GVSMVT+L+LAISYPTLAAAPHMF+NAYKNV+AVA+ T+YSFP+ADKVKEYL DPSKF                              ESD DMGFSLFD
Sbjct:  211 EDDLIGKFAAGVSMVTSLSLAISYPTLAAAPHMFVNAYKNVLAVAVETDYSFPEADKVKEYLKDPSKFAVAAVAAPAAASGAPAAAAKEEEKKEEPAEESDDDMGFSLFD 320          
BLAST of CX047518 vs. ExPASy Swiss-Prot
Match: RLA0_ORYSJ (60S acidic ribosomal protein P0 OS=Oryza sativa subsp. japonica GN=Os08g0130500 PE=1 SV=3)

HSP 1 Score: 122.865 bits (307), Expect = 7.638e-28
Identity = 63/109 (57.80%), Postives = 74/109 (67.89%), Query Frame = -3
Query:  155 EDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDGDMGFSLFD 481
            EDDL+EKFASGVSMV +++LAISYPT+AAAPHMF+N YKNV+AVA+ TEYS+P ADK+KEYL DPSKF                             ESDGD+G SLFD
Sbjct:  211 EDDLMEKFASGVSMVASVSLAISYPTIAAAPHMFLNGYKNVLAVAVETEYSYPHADKIKEYLKDPSKFAVAAPVAADSGAAAPSAAKEEEKKEEPEEESDGDLGMSLFD 319          
BLAST of CX047518 vs. ExPASy Swiss-Prot
Match: RLA02_ARATH (60S acidic ribosomal protein P0-2 OS=Arabidopsis thaliana GN=RPP0B PE=1 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 2.222e-27
Identity = 57/68 (83.82%), Postives = 65/68 (95.59%), Query Frame = -3
Query:  278 EDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKF 481
            ED LVEKFASG+SMVT+LALA+SYPTLAAAPHMFINAYKN +A+A+ATEY+FPQA+KVKEYL DPSKF
Sbjct:  210 EDQLVEKFASGISMVTSLALAVSYPTLAAAPHMFINAYKNALAIAVATEYTFPQAEKVKEYLKDPSKF 277          
BLAST of CX047518 vs. ExPASy Swiss-Prot
Match: RLA03_ARATH (60S acidic ribosomal protein P0-3 OS=Arabidopsis thaliana GN=RPP0C PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.441e-26
Identity = 55/68 (80.88%), Postives = 65/68 (95.59%), Query Frame = -3
Query:  278 EDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKF 481
            ED LVEKFASG+SMVT+LALA+SYPTLAAAPHMFINAYKN +A+A+AT+Y+FPQA+KVKE+L DPSKF
Sbjct:  210 EDQLVEKFASGISMVTSLALAVSYPTLAAAPHMFINAYKNALAIAVATDYTFPQAEKVKEFLKDPSKF 277          
BLAST of CX047518 vs. ExPASy Swiss-Prot
Match: RLA0_MAIZE (60S acidic ribosomal protein P0 OS=Zea mays GN=RP-P0 PE=1 SV=3)

HSP 1 Score: 115.931 bits (289), Expect = 9.337e-26
Identity = 62/110 (56.36%), Postives = 74/110 (67.27%), Query Frame = -3
Query:  155 AEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDGDMGFSLFD 484
            +E+DL+EKFA+GVSMV +L+LAISYPTLAA PHMFIN YKNV+AVA+ T+YS+P ADK+KEYL DPSKF                             ESD +MGFSLFD
Sbjct:  210 SEEDLIEKFATGVSMVASLSLAISYPTLAAVPHMFINGYKNVLAVAVETDYSYPHADKIKEYLKDPSKF-AVAAPVAAGDSGASAAPKEEEKAAEPEEESDEEMGFSLFD 318          
BLAST of CX047518 vs. ExPASy Swiss-Prot
Match: RLA0_LUPLU (60S acidic ribosomal protein P0 OS=Lupinus luteus PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 4.963e-19
Identity = 56/111 (50.45%), Postives = 64/111 (57.66%), Query Frame = -3
Query:  155 EDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKF--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDGDMGFSLFD 481
            EDDL+EKFA GVS       +   P  +AAPH+FINAYKNV+AVA+ATEYSFPQAD+VKEYL DPSKF                               ESD +MGF LFD
Sbjct:  211 EDDLLEKFAIGVSQCYFSDTSHFIPNPSAAPHVFINAYKNVLAVAVATEYSFPQADEVKEYLKDPSKFAAVAAAAAPAADSGAAPAAAAKAEKEEEPAEESDDEMGFGLFD 321          
BLAST of CX047518 vs. ExPASy Swiss-Prot
Match: RLA0_DANRE (60S acidic ribosomal protein P0 OS=Danio rerio GN=rplp0 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.765e-16
Identity = 46/109 (42.20%), Postives = 58/109 (53.21%), Query Frame = -3
Query:  155 EDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDGDMGFSLFD 481
            ED L ++F  GV  + ++ L I YPTLA+ PH  IN YK V+AV + T+Y+FP A+KVK YLADP+ F                             ESD DMGF LFD
Sbjct:  211 EDALHKRFLKGVRNIASVCLQIGYPTLASIPHTIINGYKRVLAVTVETDYTFPLAEKVKAYLADPTAFAVAAPVAAATEQKSAAPAAKEEAPKEDSEESDEDMGFGLFD 319          
BLAST of CX047518 vs. ExPASy Swiss-Prot
Match: RLA0_CHICK (60S acidic ribosomal protein P0 OS=Gallus gallus GN=RPLP0 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.305e-16
Identity = 45/109 (41.28%), Postives = 59/109 (54.13%), Query Frame = -3
Query:  155 EDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDGDMGFSLFD 481
            E+ L ++F  GV  V ++ L I YPT+A+ PH  +N YK V+AVA+ T+Y+FP A+KVK +LADPS F                             ESD DMGF LFD
Sbjct:  208 EETLHKRFLEGVRNVASVCLQIGYPTIASVPHSIVNGYKRVLAVAVETDYTFPLAEKVKAFLADPSAFVAAAPVVVETAAPAAAAAPAKEAPKEESEESDEDMGFGLFD 316          
BLAST of CX047518 vs. ExPASy Swiss-Prot
Match: RLA0_ICTPU (60S acidic ribosomal protein P0 OS=Ictalurus punctatus GN=rplp0 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.144e-15
Identity = 38/68 (55.88%), Postives = 49/68 (72.06%), Query Frame = -3
Query:  278 EDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKF 481
            ED L ++F  GV  + ++ L I YPTLA+ PH  IN YK V+ VA+ T+YSFP ADKVK +LADPS+F
Sbjct:  208 EDALHKRFLEGVRNIASVCLQIGYPTLASIPHSIINGYKRVLRVAVETDYSFPMADKVKAFLADPSRF 275          
The following BLAST results are available for this feature:
BLAST of CX047518 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
RLA01_ARATH4.478e-2862.0460S acidic ribosomal protein P0-1 OS=Arabidopsis t... [more]
RLA0_SOYBN7.638e-2860.9160S acidic ribosomal protein P0 OS=Glycine max PE=... [more]
RLA0_ORYSJ7.638e-2857.8060S acidic ribosomal protein P0 OS=Oryza sativa su... [more]
RLA02_ARATH2.222e-2783.8260S acidic ribosomal protein P0-2 OS=Arabidopsis t... [more]
RLA03_ARATH1.441e-2680.8860S acidic ribosomal protein P0-3 OS=Arabidopsis t... [more]
RLA0_MAIZE9.337e-2656.3660S acidic ribosomal protein P0 OS=Zea mays GN=RP-... [more]
RLA0_LUPLU4.963e-1950.4560S acidic ribosomal protein P0 OS=Lupinus luteus ... [more]
RLA0_DANRE1.765e-1642.2060S acidic ribosomal protein P0 OS=Danio rerio GN=... [more]
RLA0_CHICK2.305e-1641.2860S acidic ribosomal protein P0 OS=Gallus gallus G... [more]
RLA0_ICTPU1.144e-1555.8860S acidic ribosomal protein P0 OS=Ictalurus punct... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_14F06_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-14F06-L11-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047518 ID=CX047518; Name=CX047518; organism=Citrus sinensis; type=EST; length=486bp
TTTTTTTTTTTTTTTTTGTCCTAAATAAAGGATTATATAAAATAAAAAGG
AAACTGAGTCTACAAAAAGCATTAAGAAAATAAAGCAAACAAAACCAAAA
ACATAACCATAAACGTCAAAATCCTAAGTTATAGCACAAATGACAGTGCA
CTTAGTCGAACAAGCTGAAGCCCATATCTCCATCAGACTCCTCAGCAGGC
TCTTCCTTCTTCTCTTCCTCCTTTGCAGCAGCAGCTGGGGCATCACCACC
GCCAGCAACCGGGGCAGCAGCAACAGCAAACTTGCTTGGGTCCGCCAGGT
ACTCCTTCACTTTGTCAGCCTGAGGGAATGAATACTCAGTTGCAAGAGCA
ACAGCAACCACATTCTTGTATGCATTGATGAACATGTGTGGAGCAGCTGC
CAGGGTTGGGTATGAGATGGCAAGTGCCAGAGCGGTGACCATTGATACAC
CTGAGGCGAACTTCTCCACTAGGTCATCTTCAGCCT
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