CV712806

Overview
NameCV712806
Unique NameCV712806
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length782
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4179 contig Csv1_Contig4179:26..807. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712806 vs. ExPASy Swiss-Prot
Match: AGD10_ARATH (ADP-ribosylation factor GTPase-activating protein AGD10 OS=Arabidopsis thaliana GN=AGD10 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.511e-35
Identity = 68/74 (91.89%), Postives = 73/74 (98.65%), Query Frame = 3
Query:  561 GIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYK 782
            GIFLCIDCSAVHRSLGVHISFVRSTNLDSWS+EQLKMM+YGGNNRAQVFFKQ+GW+DGGK EAKYTSRAA+LYK
Sbjct:   41 GIFLCIDCSAVHRSLGVHISFVRSTNLDSWSSEQLKMMIYGGNNRAQVFFKQYGWSDGGKTEAKYTSRAADLYK 114          
BLAST of CV712806 vs. ExPASy Swiss-Prot
Match: AGD9_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD9 OS=Arabidopsis thaliana GN=AGD9 PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.111e-33
Identity = 65/74 (87.84%), Postives = 71/74 (95.95%), Query Frame = 3
Query:  561 GIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYK 782
            GIFLCIDCSAVHRSLGVHISFVRSTNLDSWS EQL+ M++GGNNRAQVFFKQHGW DGGKIEAKYTSRAA++Y+
Sbjct:   41 GIFLCIDCSAVHRSLGVHISFVRSTNLDSWSPEQLRTMMFGGNNRAQVFFKQHGWNDGGKIEAKYTSRAADMYR 114          
BLAST of CV712806 vs. ExPASy Swiss-Prot
Match: AGD8_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD8 OS=Arabidopsis thaliana GN=AGD8 PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.111e-33
Identity = 65/74 (87.84%), Postives = 71/74 (95.95%), Query Frame = 3
Query:  561 GIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYK 782
            GIFLCIDCSA HR+LGVHISFVRSTNLDSWS EQL+ M++GGNNRAQVFFKQHGWTDGGKIEAKYTSRAA+LY+
Sbjct:   44 GIFLCIDCSATHRNLGVHISFVRSTNLDSWSPEQLRTMMFGGNNRAQVFFKQHGWTDGGKIEAKYTSRAADLYR 117          
BLAST of CV712806 vs. ExPASy Swiss-Prot
Match: ARFG2_BOVIN (ADP-ribosylation factor GTPase-activating protein 2 OS=Bos taurus GN=ARFGAP2 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.249e-18
Identity = 46/75 (61.33%), Postives = 54/75 (72.00%), Query Frame = 3
Query:  561 GIFLCIDCSAVHRSLGVHISFVRSTNLDS-WSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYK 782
            G+FLCIDCS VHRSLGVH+SF+RST LDS WS  QL+ M  GGN  A  FF+QHG T       KY SRAA++Y+
Sbjct:   42 GVFLCIDCSGVHRSLGVHLSFIRSTELDSTWSWFQLRCMQVGGNANATAFFRQHGCT-ANDANTKYNSRAAQMYR 115          
BLAST of CV712806 vs. ExPASy Swiss-Prot
Match: ARFG2_MOUSE (ADP-ribosylation factor GTPase-activating protein 2 OS=Mus musculus GN=Arfgap2 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.938e-18
Identity = 46/75 (61.33%), Postives = 54/75 (72.00%), Query Frame = 3
Query:  561 GIFLCIDCSAVHRSLGVHISFVRSTNLDS-WSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYK 782
            G+FLCIDCS VHRSLGVH+SF+RST LDS WS  QL+ M  GGN  A  FF+QHG         KYTSRAA++Y+
Sbjct:   42 GVFLCIDCSGVHRSLGVHLSFIRSTELDSNWSWLQLRCMQVGGNANATAFFRQHGCM-ANDANTKYTSRAAQMYR 115          
BLAST of CV712806 vs. ExPASy Swiss-Prot
Match: ARFG2_PONAB (ADP-ribosylation factor GTPase-activating protein 2 OS=Pongo abelii GN=ARFGAP2 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.011e-18
Identity = 45/75 (60.00%), Postives = 54/75 (72.00%), Query Frame = 3
Query:  561 GIFLCIDCSAVHRSLGVHISFVRSTNLDS-WSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYK 782
            G+FLCIDCS VHRSLGVH+SF+RST LDS W+  QL+ M  GGN  A  FF+QHG T       KY SRAA++Y+
Sbjct:   42 GVFLCIDCSGVHRSLGVHLSFIRSTELDSNWNWFQLRCMQVGGNANATAFFRQHGCT-ANDANTKYNSRAAQMYR 115          
BLAST of CV712806 vs. ExPASy Swiss-Prot
Match: ARFG2_HUMAN (ADP-ribosylation factor GTPase-activating protein 2 OS=Homo sapiens GN=ARFGAP2 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.011e-18
Identity = 45/75 (60.00%), Postives = 54/75 (72.00%), Query Frame = 3
Query:  561 GIFLCIDCSAVHRSLGVHISFVRSTNLDS-WSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYK 782
            G+FLCIDCS VHRSLGVH+SF+RST LDS W+  QL+ M  GGN  A  FF+QHG T       KY SRAA++Y+
Sbjct:   42 GVFLCIDCSGVHRSLGVHLSFIRSTELDSNWNWFQLRCMQVGGNANATAFFRQHGCT-ANDANTKYNSRAAQMYR 115          
BLAST of CV712806 vs. ExPASy Swiss-Prot
Match: ARFG3_BOVIN (ADP-ribosylation factor GTPase-activating protein 3 OS=Bos taurus GN=ARFGAP3 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.545e-18
Identity = 47/75 (62.67%), Postives = 53/75 (70.67%), Query Frame = 3
Query:  561 GIFLCIDCSAVHRSLGVHISFVRSTNLDS-WSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYK 782
            G+FLCIDCS  HRSLGVH+SF+RST LDS WS  QL+ M  GGN  A  FF QHG  D     AKY SRAA+LY+
Sbjct:   41 GVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQVGGNANASSFFHQHG-CDTNDTNAKYNSRAAQLYR 114          
BLAST of CV712806 vs. ExPASy Swiss-Prot
Match: ARFG2_XENTR (ADP-ribosylation factor GTPase-activating protein 2 OS=Xenopus tropicalis GN=arfgap2 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.545e-18
Identity = 46/75 (61.33%), Postives = 54/75 (72.00%), Query Frame = 3
Query:  561 GIFLCIDCSAVHRSLGVHISFVRSTNLDS-WSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYK 782
            G+FLCIDCS VHRSLGVH+SF+RST LDS WS  QL+ M  GGN  A  FF QHG T      AKY SR+A++Y+
Sbjct:   42 GVFLCIDCSGVHRSLGVHLSFIRSTELDSNWSWFQLRCMQVGGNASANAFFHQHGATT-SDTNAKYNSRSAQMYR 115          
BLAST of CV712806 vs. ExPASy Swiss-Prot
Match: ARFG2_RAT (ADP-ribosylation factor GTPase-activating protein 2 OS=Rattus norvegicus GN=Arfgap2 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.116e-17
Identity = 45/75 (60.00%), Postives = 53/75 (70.67%), Query Frame = 3
Query:  561 GIFLCIDCSAVHRSLGVHISFVRSTNLDS-WSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYK 782
            G+FLCIDCS VHRSLGVH+SF+RST LDS WS  QL+ M  GGN  A  FF+QHG         KY SRAA++Y+
Sbjct:   42 GVFLCIDCSGVHRSLGVHLSFIRSTELDSNWSWLQLRCMQVGGNANATAFFRQHGCL-ANDANTKYNSRAAQMYR 115          
The following BLAST results are available for this feature:
BLAST of CV712806 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
AGD10_ARATH4.511e-3591.89ADP-ribosylation factor GTPase-activating protein ... [more]
AGD9_ARATH1.111e-3387.84Probable ADP-ribosylation factor GTPase-activating... [more]
AGD8_ARATH1.111e-3387.84Probable ADP-ribosylation factor GTPase-activating... [more]
ARFG2_BOVIN2.249e-1861.33ADP-ribosylation factor GTPase-activating protein ... [more]
ARFG2_MOUSE2.938e-1861.33ADP-ribosylation factor GTPase-activating protein ... [more]
ARFG2_PONAB5.011e-1860.00ADP-ribosylation factor GTPase-activating protein ... [more]
ARFG2_HUMAN5.011e-1860.00ADP-ribosylation factor GTPase-activating protein ... [more]
ARFG3_BOVIN6.545e-1862.67ADP-ribosylation factor GTPase-activating protein ... [more]
ARFG2_XENTR6.545e-1861.33ADP-ribosylation factor GTPase-activating protein ... [more]
ARFG2_RAT1.116e-1760.00ADP-ribosylation factor GTPase-activating protein ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001O18_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001O18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712806 ID=CV712806; Name=CV712806; organism=Citrus sinensis; type=EST; length=782bp
GCATTGGGAGCCGACGAAAGGTAGAAAACAATTTATTGCTTGCATCTGGA
TATATCTTAGAAAAATCTATAAGCATCAGAAAGTCCGCATAGACAATTTT
GCTAGCCGGCGGAGACATCATTCTTCAAGATCATCTGCCGAAGGGTCTCC
TCCACCTGCAGCATTCCTGCCCGTGTACGCACGCCCTTGAGTTTGCAGTT
GCTCCTTCTTACTTTGGAGTTGAACTCCGCCAACGCCCATCTCAAAATCT
TTCCTCTCCTCCTGCCCTTTTGCGCCTAAATGCTCTCCCTTCGTGCGCCC
TCCGCGGTGCACCTCAGCAAGACGCTCAAGGCTGTTGTCACGATTTCCAC
CAGGGATGGTAGTCACTCCCGGCCTTTCTCCGGAATCTTTTTCATCTCTT
TGGCGCTGCGAATCCATGCTCTTGATCCTGTATTTTTTTTTTCCCTTGCT
TCAGCCCTTAATTTCAGATGAAACTCGAACCAGGTAATTAAACAGACAGA
CCTTTATTGTCACGACTGCAGGATTTCAATTCTTTATATAAAGAACGGGA
CCAAAAAACCGGGATCTTTCTCTGCATCGATTGCTCTGCCGTTCACCGTA
GTCTCGGTGTCCACATCAGCTTCGTTAGGTCAACAAATTTAGACTCATGG
AGTGCTGAGCAGTTGAAAATGATGGTGTATGGAGGAAACAACCGTGCACA
AGTTTTCTTTAAGCAGCATGGATGGACAGATGGAGGCAAAATTGAGGCTA
AGTATACCTCAAGAGCTGCTGAATTATACAAG
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