CV712801

Overview
NameCV712801
Unique NameCV712801
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length771
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7251 contig Csv1_Contig7251:1084..1854. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712801 vs. ExPASy Swiss-Prot
Match: DXS_CAPAN (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Capsicum annuum GN=TKT2 PE=2 SV=1)

HSP 1 Score: 388.267 bits (996), Expect = 2.547e-107
Identity = 187/209 (89.47%), Postives = 205/209 (98.09%), Query Frame = -2
Query:  144 CGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREALEIMS 770
            CG+FDVTFMACLPNMVVMAPSDEAELFH+VATAAAIDDRPSCFRYPRGNGIGVELP GNKGIPLEVGKGRIL+EGERVALLGYG+AVQ+CLAA+++LES GL++TVADARFCKPLD ALIRSLAKSHEVL+TVE+GSIGGFGSHVVQF+ALDGLLDG +KWRP+VLPDRYIDHGSPADQLA+AGLTPSHIAATVFNILGQTREALE+M+
Sbjct:  511 CGAFDVTFMACLPNMVVMAPSDEAELFHIVATAAAIDDRPSCFRYPRGNGIGVELPAGNKGIPLEVGKGRILVEGERVALLGYGSAVQNCLAAASVLESRGLQVTVADARFCKPLDRALIRSLAKSHEVLVTVEKGSIGGFGSHVVQFMALDGLLDGKLKWRPIVLPDRYIDHGSPADQLAEAGLTPSHIAATVFNILGQTREALEVMT 719          
BLAST of CV712801 vs. ExPASy Swiss-Prot
Match: DXS_ORYSJ (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Oryza sativa subsp. japonica GN=CLA1 PE=2 SV=2)

HSP 1 Score: 370.933 bits (951), Expect = 4.209e-102
Identity = 178/209 (85.17%), Postives = 195/209 (93.30%), Query Frame = -2
Query:  144 CGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREALEIMS 770
            CG+FDVT+MACLPNMVVMAPSDEAEL HMVATAAAIDDRPSCFRYPRGNGIGV LPP  KG+PLEVGKGR+L+EGERVALLGYG+AVQ CLAA++L+E HGL++TVADARFCKPLD  LIR LA SHEVL+TVEEGSIGGFGSHV QF+ALDGLLDG +KWRPLVLPDRYIDHGSPADQLA+AGLTPSHIAATVFN+LGQ REAL IM+
Sbjct:  508 CGAFDVTYMACLPNMVVMAPSDEAELCHMVATAAAIDDRPSCFRYPRGNGIGVPLPPNYKGVPLEVGKGRVLLEGERVALLGYGSAVQYCLAAASLVERHGLKVTVADARFCKPLDQTLIRRLASSHEVLLTVEEGSIGGFGSHVAQFMALDGLLDGKLKWRPLVLPDRYIDHGSPADQLAEAGLTPSHIAATVFNVLGQAREALAIMT 716          
BLAST of CV712801 vs. ExPASy Swiss-Prot
Match: DXS_ARATH (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=CLA1 PE=1 SV=2)

HSP 1 Score: 362.459 bits (929), Expect = 1.497e-99
Identity = 173/205 (84.39%), Postives = 190/205 (92.68%), Query Frame = -2
Query:  156 CGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREAL 770
            CG+FDVTFMACLPNM+VMAPSDEA+LF+MVATA AIDDRPSCFRYPRGNGIGV LPPGNKG+P+E+GKGRIL EGERVALLGYG+AVQSCL A+ +LE  GL +TVADARFCKPLD ALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDG +KWRP+VLPDRYIDHG+PADQLA+AGL PSHIAAT  N++G  REAL
Sbjct:  512 CGAFDVTFMACLPNMIVMAPSDEADLFNMVATAVAIDDRPSCFRYPRGNGIGVALPPGNKGVPIEIGKGRILKEGERVALLGYGSAVQSCLGAAVMLEERGLNVTVADARFCKPLDRALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGKLKWRPMVLPDRYIDHGAPADQLAEAGLMPSHIAATALNLIGAPREAL 716          
BLAST of CV712801 vs. ExPASy Swiss-Prot
Match: DXS_RHILO (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobium loti GN=dxs PE=3 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 4.258e-62
Identity = 123/204 (60.29%), Postives = 147/204 (72.06%), Query Frame = -2
Query:  159 CGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREA 770
            CG+FD TF+A LP  VVMA +DEAEL HMV TAAA DD P  FRYPRGNG+GV++P   +G  LE+GKGR++ EG +VALL +GT +Q CL A+  L + GL  TVADARF KPLD  LIR LA+SHEVL+TVEEG+IGGF SHV+QFLA +GLL+  +K RPLVLPD + DH  P    A AGL  + I  TVF  L  T  A
Sbjct:  433 CGAFDTTFLASLPGFVVMAAADEAELRHMVRTAAAYDDGPIAFRYPRGNGVGVDMP--ERGEVLELGKGRVVREGSKVALLSFGTRLQDCLIAAEELGAAGLSTTVADARFAKPLDEDLIRRLARSHEVLVTVEEGAIGGFASHVLQFLAHEGLLESGLKVRPLVLPDVFTDHAKPEKMYADAGLDAAGIVRTVFTALDHTARA 634          
BLAST of CV712801 vs. ExPASy Swiss-Prot
Match: DXS_BRUSU (1-deoxy-D-xylulose-5-phosphate synthase OS=Brucella suis GN=dxs PE=3 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 3.985e-60
Identity = 122/197 (61.93%), Postives = 143/197 (72.59%), Query Frame = -2
Query:  177 GSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNIL 767
            GSFD  F+A LP  VVMA SDEAEL HMV TAA  D+ P  FRYPRG+G+GV+LP   +G  LE+GKGRI+ EG +VALL +GT +Q CLAA+  L + GL  TVADARF KPLDH LIR LA+ HEVL+ VEEG++GGFGSHV+QFLA DGLLD  +K R L LPD Y DHG P    A+AGL  + I  TVF  L
Sbjct:  433 GSFDTGFLAALPGFVVMAASDEAELRHMVRTAAEYDEGPISFRYPRGDGVGVDLP--ERGSVLEIGKGRIVREGTKVALLSFGTRLQECLAAAEELGAAGLSTTVADARFAKPLDHDLIRRLAREHEVLVMVEEGAVGGFGSHVLQFLATDGLLDRGLKVRALTLPDIYQDHGKPDAMYAEAGLDRTGIVRTVFAAL 627          
BLAST of CV712801 vs. ExPASy Swiss-Prot
Match: DXS_BRUSI (1-deoxy-D-xylulose-5-phosphate synthase OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=dxs PE=3 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 3.985e-60
Identity = 122/197 (61.93%), Postives = 143/197 (72.59%), Query Frame = -2
Query:  177 GSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNIL 767
            GSFD  F+A LP  VVMA SDEAEL HMV TAA  D+ P  FRYPRG+G+GV+LP   +G  LE+GKGRI+ EG +VALL +GT +Q CLAA+  L + GL  TVADARF KPLDH LIR LA+ HEVL+ VEEG++GGFGSHV+QFLA DGLLD  +K R L LPD Y DHG P    A+AGL  + I  TVF  L
Sbjct:  433 GSFDTGFLAALPGFVVMAASDEAELRHMVRTAAEYDEGPISFRYPRGDGVGVDLP--ERGSVLEIGKGRIVREGTKVALLSFGTRLQECLAAAEELGATGLSTTVADARFAKPLDHDLIRRLAREHEVLVMVEEGAVGGFGSHVLQFLATDGLLDRGLKVRALTLPDIYQDHGKPDAMYAEAGLDRTGIVRTVFAAL 627          
BLAST of CV712801 vs. ExPASy Swiss-Prot
Match: DXS_BRUC2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=dxs PE=3 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 3.985e-60
Identity = 122/197 (61.93%), Postives = 143/197 (72.59%), Query Frame = -2
Query:  177 GSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNIL 767
            GSFD  F+A LP  VVMA SDEAEL HMV TAA  D+ P  FRYPRG+G+GV+LP   +G  LE+GKGRI+ EG +VALL +GT +Q CLAA+  L + GL  TVADARF KPLDH LIR LA+ HEVL+ VEEG++GGFGSHV+QFLA DGLLD  +K R L LPD Y DHG P    A+AGL  + I  TVF  L
Sbjct:  433 GSFDTGFLAALPGFVVMAASDEAELRHMVRTAAEYDEGPISFRYPRGDGVGVDLP--ERGSVLEIGKGRIVREGTKVALLSFGTRLQECLAAAEELGAAGLSTTVADARFAKPLDHDLIRRLAREHEVLVMVEEGAVGGFGSHVLQFLATDGLLDRGLKVRALTLPDIYQDHGKPDAMYAEAGLDRTGIVRTVFAAL 627          
BLAST of CV712801 vs. ExPASy Swiss-Prot
Match: DXS_BRASO (1-deoxy-D-xylulose-5-phosphate synthase OS=Bradyrhizobium sp. (strain ORS278) GN=dxs PE=3 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 5.205e-60
Identity = 114/199 (57.29%), Postives = 145/199 (72.86%), Query Frame = -2
Query:  171 GSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 767
            GSFD  ++ CLPNMV+MA SDEAEL HMVAT  AIDDRPS  RYPRG G GVE+P    G+ L +GKGR++ +G++VALL +GT +  C  A+  L +HGL  ++ADARF KPLD  L+  LA+ HE+LIT+EEGSIGGFGSHV+Q+LA  G+LDG +K R +VLPD + DH +PA   A+AGL    I   VF +LG+
Sbjct:  435 GSFDNAYLGCLPNMVIMAASDEAELVHMVATQVAIDDRPSSVRYPRGEGRGVEMP--EVGVALPIGKGRMIRQGKQVALLSFGTRLAECEKAADELAAHGLSASIADARFMKPLDEELVLKLARDHEILITIEEGSIGGFGSHVMQYLADQGMLDGGLKMRSMVLPDEFQDHDTPAAMYARAGLDAKGIVRKVFEVLGK 631          
BLAST of CV712801 vs. ExPASy Swiss-Prot
Match: DXS_BRUME (1-deoxy-D-xylulose-5-phosphate synthase OS=Brucella melitensis GN=dxs PE=3 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 6.797e-60
Identity = 122/197 (61.93%), Postives = 142/197 (72.08%), Query Frame = -2
Query:  177 GSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNIL 767
            GSFD  F+A LP  VVMA SDEAEL HMV TAA  D+ P  FRYPRG+G+GV+LP   +G  LE+GKGRI+ EG +VALL +GT +Q CLAA+  L + GL  TVADARF KPLDH LIR LA+ HEVL+ VEEG++GGFGSHV+QFLA DGLLD   K R L LPD Y DHG P    A+AGL  + I  TVF  L
Sbjct:  433 GSFDTGFLAALPGFVVMAASDEAELRHMVRTAAEYDEGPISFRYPRGDGVGVDLP--ERGSVLEIGKGRIVREGTKVALLSFGTRLQECLAAAEELGAAGLSTTVADARFAKPLDHDLIRRLAREHEVLVMVEEGAVGGFGSHVLQFLATDGLLDRGFKVRALTLPDIYQDHGKPDAMYAEAGLDRTGIVRTVFAAL 627          
BLAST of CV712801 vs. ExPASy Swiss-Prot
Match: DXS_BRUMB (1-deoxy-D-xylulose-5-phosphate synthase OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=dxs PE=3 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 6.797e-60
Identity = 122/197 (61.93%), Postives = 142/197 (72.08%), Query Frame = -2
Query:  177 GSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNIL 767
            GSFD  F+A LP  VVMA SDEAEL HMV TAA  D+ P  FRYPRG+G+GV+LP   +G  LE+GKGRI+ EG +VALL +GT +Q CLAA+  L + GL  TVADARF KPLDH LIR LA+ HEVL+ VEEG++GGFGSHV+QFLA DGLLD   K R L LPD Y DHG P    A+AGL  + I  TVF  L
Sbjct:  433 GSFDTGFLAALPGFVVMAASDEAELRHMVRTAAEYDEGPISFRYPRGDGVGVDLP--ERGSVLEIGKGRIVREGTKVALLSFGTRLQECLAAAEELGAAGLSTTVADARFAKPLDHDLIRRLAREHEVLVMVEEGAVGGFGSHVLQFLATDGLLDRGFKVRALTLPDIYQDHGKPDAMYAEAGLDRTGIVRTVFAAL 627          
The following BLAST results are available for this feature:
BLAST of CV712801 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_CAPAN2.547e-10789.47Probable 1-deoxy-D-xylulose-5-phosphate synthase, ... [more]
DXS_ORYSJ4.209e-10285.17Probable 1-deoxy-D-xylulose-5-phosphate synthase, ... [more]
DXS_ARATH1.497e-9984.39Probable 1-deoxy-D-xylulose-5-phosphate synthase, ... [more]
DXS_RHILO4.258e-6260.291-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobi... [more]
DXS_BRUSU3.985e-6061.931-deoxy-D-xylulose-5-phosphate synthase OS=Brucell... [more]
DXS_BRUSI3.985e-6061.931-deoxy-D-xylulose-5-phosphate synthase OS=Brucell... [more]
DXS_BRUC23.985e-6061.931-deoxy-D-xylulose-5-phosphate synthase OS=Brucell... [more]
DXS_BRASO5.205e-6057.291-deoxy-D-xylulose-5-phosphate synthase OS=Bradyrh... [more]
DXS_BRUME6.797e-6061.931-deoxy-D-xylulose-5-phosphate synthase OS=Brucell... [more]
DXS_BRUMB6.797e-6061.931-deoxy-D-xylulose-5-phosphate synthase OS=Brucell... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001O16_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001O16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712801 ID=CV712801; Name=CV712801; organism=Citrus sinensis; type=EST; length=771bp
GGTTGATGTAAACTAAATAAACCAATGCTAACAAAAGCAATTTCTACAGT
GCCGAGGCTGAAATGTATATAACTTCTTACAGTTCTTATATTTGTACATT
GTGGAGAATATTGGCAATAATTGTGTATTCTTCAGCTTTTGAATGACATT
ATCTCAAGAGCCTCTCTTGTCTGTCCAAGAATGTTGAATACTGTTGCCGC
AATGTGGGATGGTGTAAGACCAGCTTGAGCCAACTGGTCAGCAGGTGATC
CATGGTCAATATATCGATCGGGGAGTACAAGTGGTCTCCACTTGACCGTG
CCATCAAGAAGACCATCGAGAGCGAGGAACTGAACAACATGTGATCCAAA
ACCCCCAATTGATCCTTCCTCCACAGTAATCAAAACTTCATGTGATTTTG
CCAAGCTACGAATGAGGGCATGATCCAGTGGTTTACAGAATCGAGCATCA
GCTACAGTCAGCCGTAACCCATGGGATTCCAATAAAGCAGAAGCAGCTAA
ACAGCTCTGAACGGCTGTACCATAGCCCAAGAGTGCGACTCTTTCACCTT
CAATCAGTATCCTGCCTTTGCCAACCTCAAGAGGAATGCCTTTGTTTCCT
GGTGGCAGCTCAACACCAATCCCATTTCCTCTTGGGTAACGGAAACAGCT
AGGGCGGTCATCTATAGCAGCAGCAGTGGCAACCATGTGAAAAAGCTCTG
CCTCATCAGAAGGAGCCATTACCACCATGTTAGGAAGGCATGCCATAAAA
GTGACATCAAAAGACCCACAA
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