CV712788

Overview
NameCV712788
Unique NameCV712788
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length754
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2942 contig Csv1_Contig2942:611..1363. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712788 vs. ExPASy Swiss-Prot
Match: TC132_ARATH (Translocase of chloroplast 132, chloroplastic OS=Arabidopsis thaliana GN=TOC132 PE=1 SV=1)

HSP 1 Score: 300.442 bits (768), Expect = 6.690e-81
Identity = 149/177 (84.18%), Postives = 165/177 (93.22%), Query Frame = -3
Query:  222 QVTKDKKDANVQMEVVSSLKHGEGKATSLGFDMQTVGKDLAYTLRSETRFSNFRKNKAMAGL*VTHLGDSLSAGVKVEDKLIVNKRFRVVMTGGAMTSRSDVAYGGSLEAQLRDADYPLGRSLTTLGLSVMDWHGDLAIGCNIQSQVPIGRSTNMIGRANLNNRGAGQVSIRVNSSE 752
            QVTKDKKDANVQ+E+ SS+KHGEGK+TSLGFDMQTVGK+LAYTLRSETRF+NFR+NKA AGL VTHLGDS+SAG+KVEDK I +K FR+VM+GGAMTSR D AYGG+LEAQLRD DYPLGR LTTLGLSVMDWHGDLAIG NIQSQVPIGRS+N+I RANLNNRGAGQVS+RVNSSE
Sbjct: 1002 QVTKDKKDANVQLEMASSVKHGEGKSTSLGFDMQTVGKELAYTLRSETRFNNFRRNKAAAGLSVTHLGDSVSAGLKVEDKFIASKWFRIVMSGGAMTSRGDFAYGGTLEAQLRDKDYPLGRFLTTLGLSVMDWHGDLAIGGNIQSQVPIGRSSNLIARANLNNRGAGQVSVRVNSSE 1178          
BLAST of CV712788 vs. ExPASy Swiss-Prot
Match: TC120_ARATH (Translocase of chloroplast 120, chloroplastic OS=Arabidopsis thaliana GN=TOC120 PE=1 SV=1)

HSP 1 Score: 292.738 bits (748), Expect = 1.395e-78
Identity = 146/177 (82.49%), Postives = 163/177 (92.09%), Query Frame = -3
Query:  222 QVTKDKKDANVQMEVVSSLKHGEGKATSLGFDMQTVGKDLAYTLRSETRFSNFRKNKAMAGL*VTHLGDSLSAGVKVEDKLIVNKRFRVVMTGGAMTSRSDVAYGGSLEAQLRDADYPLGRSLTTLGLSVMDWHGDLAIGCNIQSQVPIGRSTNMIGRANLNNRGAGQVSIRVNSSE 752
            QVTKDKKDA+VQ+E+ SS+KHGEG++TSLGFDMQ  GK+LAYT+RSETRF+ FRKNKA AGL VT LGDS+SAG+KVEDKLI NKRFR+VM+GGAMTSR DVAYGG+LEAQ RD DYPLGR L+TLGLSVMDWHGDLAIG NIQSQVPIGRS+N+I RANLNNRGAGQVSIRVNSSE
Sbjct:  884 QVTKDKKDAHVQLELASSVKHGEGRSTSLGFDMQNAGKELAYTIRSETRFNKFRKNKAAAGLSVTLLGDSVSAGLKVEDKLIANKRFRMVMSGGAMTSRGDVAYGGTLEAQFRDKDYPLGRFLSTLGLSVMDWHGDLAIGGNIQSQVPIGRSSNLIARANLNNRGAGQVSIRVNSSE 1060          
BLAST of CV712788 vs. ExPASy Swiss-Prot
Match: TC159_ARATH (Translocase of chloroplast 159, chloroplastic OS=Arabidopsis thaliana GN=TOC159 PE=1 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.408e-46
Identity = 87/177 (49.15%), Postives = 129/177 (72.88%), Query Frame = -3
Query:  222 QVTKDKKDANVQMEVVSSLKHGEGKATSLGFDMQTVGKDLAYTLRSETRFSNFRKNKAMAGL*VTHLGDSLSAGVKVEDKLIVNKRFRVVMTGGAMTSRSDVAYGGSLEAQLRDADYPLGRSLTTLGLSVMDWHGDLAIGCNIQSQVPIGRSTNMIGRANLNNRGAGQVSIRVNSSE 752
            QVTKDKK+ N+ ++   S KHGE  +T  GFD+Q VGK LAY +R ET+F N RKNK   G  VT LG++++ GVK+ED++ + KR  +V + G M S+ D AYG +LE +LR+AD+P+G+  ++ GLS++ W GDLA+G N+QSQV +GR++ +  RA LNN+ +GQ+++R +SS+
Sbjct: 1295 QVTKDKKEFNIHLDSSVSAKHGENGSTMAGFDIQNVGKQLAYVVRGETKFKNLRKNKTTVGGSVTFLGENIATGVKLEDQIALGKRLVLVGSTGTMRSQGDSAYGANLEVRLREADFPIGQDQSSFGLSLVKWRGDLALGANLQSQVSVGRNSKIALRAGLNNKMSGQITVRTSSSD 1471          
BLAST of CV712788 vs. ExPASy Swiss-Prot
Match: TOC90_ARATH (Translocase of chloroplast 90, chloroplastic OS=Arabidopsis thaliana GN=TOC90 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.388e-22
Identity = 56/178 (31.46%), Postives = 95/178 (53.37%), Query Frame = -3
Query:  222 QVTKDKKDANVQMEVVSSLKHGEGKAT-SLGFDMQTVGKDLAYTLRSETRFSNFRKNKAMAGL*VTHLGDSLSAGVKVEDKLIVNKRFRVVMTGGAMTSRSDVAYGGSLEAQLRDADYPLGRSLTTLGLSVMDWHGDLAIGCNIQSQVPIGRSTNMIGRANLNNRGAGQVSIRVNSSE 752
            QV++DK+   +Q E  ++      + T S+  D+Q+ G+DL Y+ +  T+   F+ N    G+ +T  G     G K+ED L+V KR ++    G M      A GGS EA +R  DYP+      L ++ + +  +L +   +Q+Q    R TN+    N+NNR  G++++++NSSE
Sbjct:  577 QVSRDKQRFTIQSETNAAYTRNFREQTFSVAVDLQSSGEDLVYSFQGGTKLQTFKHNTTDVGVGLTSFGGKYYVGGKLEDTLLVGKRVKLTANAGQMRGSGQTANGGSFEACIRGRDYPVRNEQIGLTMTALSFKRELVLNYGLQTQFRPARGTNIDVNINMNNRKMGKINVKLNSSE 754          
The following BLAST results are available for this feature:
BLAST of CV712788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
TC132_ARATH6.690e-8184.18Translocase of chloroplast 132, chloroplastic OS=A... [more]
TC120_ARATH1.395e-7882.49Translocase of chloroplast 120, chloroplastic OS=A... [more]
TC159_ARATH1.408e-4649.15Translocase of chloroplast 159, chloroplastic OS=A... [more]
TOC90_ARATH5.388e-2231.46Translocase of chloroplast 90, chloroplastic OS=Ar... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_0001O09_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001O09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712788 ID=CV712788; Name=CV712788; organism=Citrus sinensis; type=EST; length=754bp
CAGGTTTTTTTTAAAAAAATAAAATAGGAAGTCAGCATCTTACTTTCACT
CACTGACCATAAGAGATGGCTGTGTCAAACATTTTATCCTATCACCACAA
GGCTACAGCAAGACATTATACAACCTACTAGCTTTCATCATTGTCCAAGC
TGCATTTGTTGTGAATAACCAAGCAACTTTTTCAATAGGGGAATGAGGCC
AATTAAAGCTAACTGAAGCTGCTCTGAGCTATTTACACGAATACTGACTT
GCCCTGCCCCTCTATTATTCAAATTGGCGCGGCCAATCATATTTGTTGAC
CGTCCAATCGGTACCTGGGACTGTATATTGCACCCAATGGCCAGATCTCC
ATGCCAATCCATGACAGAGAGCCCAAGAGTTGTCAGCGAACGACCAAGAG
GATAGTCTGCATCTCTTAACTGAGCCTCCAAACTGCCACCATAAGCAACA
TCACTACGACTGGTCATTGCACCACCAGTCATAACTACTCTGAATCTTTT
ATTCACGATCAATTTGTCTTCAACTTTCACCCCAGCTGATAACGAATCAC
CCAAGTGAGTAACTTAGAGACCAGCCATTGCCTTATTCTTTCTAAAATTA
CTAAACCTTGTCTCACTGCGCAGTGTATAAGCCAAGTCTTTGCCGACAGT
CTGCATATCAAAACCTAATGATGTTGCTTTCCCTTCCCCATGCTTTAGAG
AACTGACTACTTCCATTTGAACATTGGCATCCTTTTTATCCTTTGTAACC
TGAC
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