CV712782

Overview
NameCV712782
Unique NameCV712782
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length804
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23_CITSI (50S ribosomal protein L23, chloroplastic OS=Citrus sinensis GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.187e-48
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 3 
Query:  516 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSIPPLRKKRT 794
            MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSIPPLRKKRT
Sbjct:    1 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSIPPLRKKRT 93
[Close]
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23_VITVI (50S ribosomal protein L23, chloroplastic OS=Vitis vinifera GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.200e-46
Identity = 90/93 (96.77%), Postives = 91/93 (97.85%), Query Frame = 3 
Query:  516 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSIPPLRKKRT 794
            MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSH+LP KGRRMGPIM HTMHYRRMIITLQPGYSIPPLRKKRT
Sbjct:    1 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT 93
[Close]
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23_CUCSA (50S ribosomal protein L23, chloroplastic OS=Cucumis sativus GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.200e-46
Identity = 90/93 (96.77%), Postives = 91/93 (97.85%), Query Frame = 3 
Query:  516 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSIPPLRKKRT 794
            MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSH+LP KGRRMGPIM HTMHYRRMIITLQPGYSIPPLRKKRT
Sbjct:    1 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT 93
[Close]
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23_JASNU (50S ribosomal protein L23, chloroplastic OS=Jasminum nudiflorum GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.491e-46
Identity = 89/93 (95.70%), Postives = 91/93 (97.85%), Query Frame = 3 
Query:  516 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSIPPLRKKRT 794
            MDGIKYAVFT+KSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSH+LP KGRRMGPIM HTMHYRRMIITLQPGYSIPPLRKKRT
Sbjct:    1 MDGIKYAVFTEKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT 93
[Close]
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23_NANDO (50S ribosomal protein L23, chloroplastic OS=Nandina domestica GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 4.559e-46
Identity = 89/93 (95.70%), Postives = 90/93 (96.77%), Query Frame = 3 
Query:  516 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSIPPLRKKRT 794
            MDGIKYAVFTDKSIRLLG NQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSH+LP KGRRMGPIM HTMHYRRMIITLQPGYSIPPLRKKRT
Sbjct:    1 MDGIKYAVFTDKSIRLLGNNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT 93
[Close]
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23_FRAAN (50S ribosomal protein L23, chloroplastic OS=Fragaria ananassa GN=rpl23 PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 4.559e-46
Identity = 89/93 (95.70%), Postives = 90/93 (96.77%), Query Frame = 3 
Query:  516 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSIPPLRKKRT 794
            MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSH+LP KGRRMGP M HTMHYRRMIITLQPGYSIPPLRKKRT
Sbjct:    1 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPTMGHTMHYRRMIITLQPGYSIPPLRKKRT 93
[Close]
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23_TOBAC (50S ribosomal protein L23, chloroplastic OS=Nicotiana tabacum GN=rpl23-A PE=1 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 5.955e-46
Identity = 89/93 (95.70%), Postives = 90/93 (96.77%), Query Frame = 3 
Query:  516 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSIPPLRKKRT 794
            MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSH+LP K RRMGPIM HTMHYRRMIITLQPGYSIPPLRKKRT
Sbjct:    1 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKSRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT 93
[Close]
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23_SOLTU (50S ribosomal protein L23, chloroplastic OS=Solanum tuberosum GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 5.955e-46
Identity = 89/93 (95.70%), Postives = 90/93 (96.77%), Query Frame = 3 
Query:  516 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSIPPLRKKRT 794
            MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSH+LP K RRMGPIM HTMHYRRMIITLQPGYSIPPLRKKRT
Sbjct:    1 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKSRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT 93
[Close]
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23_SOLLC (50S ribosomal protein L23, chloroplastic OS=Solanum lycopersicum GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 5.955e-46
Identity = 89/93 (95.70%), Postives = 90/93 (96.77%), Query Frame = 3 
Query:  516 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSIPPLRKKRT 794
            MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSH+LP K RRMGPIM HTMHYRRMIITLQPGYSIPPLRKKRT
Sbjct:    1 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKSRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT 93
[Close]
BLAST of CV712782 vs. ExPASy Swiss-Prot
Match: RK23_SOLBU (50S ribosomal protein L23, chloroplastic OS=Solanum bulbocastanum GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 5.955e-46
Identity = 89/93 (95.70%), Postives = 90/93 (96.77%), Query Frame = 3 
Query:  516 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPGYSIPPLRKKRT 794
            MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSH+LP K RRMGPIM HTMHYRRMIITLQPGYSIPPLRKKRT
Sbjct:    1 MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKSRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT 93
The following BLAST results are available for this feature:
BLAST of CV712782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
RK23_CITSI2.187e-48100.0050S ribosomal protein L23, chloroplastic OS=Citrus... [more]
RK23_VITVI1.200e-4696.7750S ribosomal protein L23, chloroplastic OS=Vitis ... [more]
RK23_CUCSA1.200e-4696.7750S ribosomal protein L23, chloroplastic OS=Cucumi... [more]
RK23_JASNU3.491e-4695.7050S ribosomal protein L23, chloroplastic OS=Jasmin... [more]
RK23_NANDO4.559e-4695.7050S ribosomal protein L23, chloroplastic OS=Nandin... [more]
RK23_FRAAN4.559e-4695.7050S ribosomal protein L23, chloroplastic OS=Fragar... [more]
RK23_TOBAC5.955e-4695.7050S ribosomal protein L23, chloroplastic OS=Nicoti... [more]
RK23_SOLTU5.955e-4695.7050S ribosomal protein L23, chloroplastic OS=Solanu... [more]
RK23_SOLLC5.955e-4695.7050S ribosomal protein L23, chloroplastic OS=Solanu... [more]
RK23_SOLBU5.955e-4695.7050S ribosomal protein L23, chloroplastic OS=Solanu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001O06_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001O06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712782 ID=CV712782; Name=CV712782; organism=Citrus sinensis; type=EST; length=804bp
GAAAGTAGGATACTCCAAATTCGTGGATCCAAGAGTTTTATAAAACGTTC
TTGGTGGAAAAAAATGTGAATGAAAGATCCCACTGAATTGAATTGGGTCC
ATGAATCTAAGAAATAGTGAGAATTCTTGATCTCTCTCAATATCTCTCTC
AATTCGAAAATCCAGGATTTGAATTGATGTCCTTTCATTGATTCCTCCTA
AATTGCATTGATTTATCCTAAAGATTTCATTTCAATTGAAATTTGGTTAT
TCACCATGTACGAGGATCCCCGCTAAGCATCCATGGCTGAATGGTTAAAG
CGCCCAACTCATAATTGGCGAATTCGTAGGTTCAATTCCTACTGGATGCA
CGCCAATGGGACCCTCCAATAAGTCTATTGGAATTGGCTCTGTATCAATG
GAATCTCATCATCTATACATAACGAATTGGTGTGGTATATTCATATCATA
ACATATGAACAGTAAGAACTAGCATTCTTATTGAGACTCGAACTCATAGG
GAAGAAAATCGATTTATGGATGGAATCAAATATGCAGTATTTACAGACAA
AAGTATTCGGTTATTGGGAAAAAATCAATATACTTCTAATGTCGAATCAG
GATCAACTAGGACAGAAATAAAGCATTGGGTCGAACTCTTCTTTGGTGTC
AAGGTAATTGCTATGAATAGTCATCAACTCCCCCGAAAGGGTAGAAGAAT
GGGACCTATTATGGCACATACAATGCATTACAGACGTATGATCATTACGC
TTCAACCGGGTTATTCTATTCCACCTCTTAGAAAGAAAAGAACTTAAATC
AAAA
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