CV712781

Overview
NameCV712781
Unique NameCV712781
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length802
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10394 contig Csv1_Contig10394:805..1606. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of CV712781 vs. ExPASy Swiss-Prot
Match: RR19_CITSI (30S ribosomal protein S19, chloroplastic OS=Citrus sinensis GN=rps19 PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.137e-47
Identity = 91/92 (98.91%), Postives = 92/92 (100.00%), Query Frame = -3
Query:  333 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 608
            +TRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR
Sbjct:    1 MTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 92          
BLAST of CV712781 vs. ExPASy Swiss-Prot
Match: RR19_EUCGG (30S ribosomal protein S19, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=rps19 PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.655e-46
Identity = 88/92 (95.65%), Postives = 92/92 (100.00%), Query Frame = -3
Query:  333 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 608
            +TRSLKKNPFVANHLLRKI+KLNTKAEKEIIITWSRASTIIPTM+GHTIAIHNGREHLPIYITDRMVGHKLGEF+PTINFRGHAKNDNRSRR
Sbjct:    1 MTRSLKKNPFVANHLLRKIEKLNTKAEKEIIITWSRASTIIPTMIGHTIAIHNGREHLPIYITDRMVGHKLGEFSPTINFRGHAKNDNRSRR 92          
BLAST of CV712781 vs. ExPASy Swiss-Prot
Match: RR19_CARPA (30S ribosomal protein S19, chloroplastic OS=Carica papaya GN=rps19 PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.468e-46
Identity = 87/92 (94.57%), Postives = 92/92 (100.00%), Query Frame = -3
Query:  333 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 608
            +TRSLKKNPFVANHLLRKI+KLNTKAEKEIIITWSRASTIIPTM+GHTIAIHNGREHLP+YITDRMVGHKLGEFAPTINFRGHAKNDN+SRR
Sbjct:    1 MTRSLKKNPFVANHLLRKIEKLNTKAEKEIIITWSRASTIIPTMIGHTIAIHNGREHLPVYITDRMVGHKLGEFAPTINFRGHAKNDNKSRR 92          
BLAST of CV712781 vs. ExPASy Swiss-Prot
Match: RR19_PLAOC (30S ribosomal protein S19, chloroplastic OS=Platanus occidentalis GN=rps19 PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 7.726e-46
Identity = 86/92 (93.48%), Postives = 92/92 (100.00%), Query Frame = -3
Query:  333 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 608
            +TRSLKKNPFVANHLLRKI+KLNTKAEKEII+TWSRASTIIPTM+GHTIAIHNG+EHLPIYITDRMVGHKLGEFAPT+NFRGHAKNDNRSRR
Sbjct:    1 MTRSLKKNPFVANHLLRKIEKLNTKAEKEIIVTWSRASTIIPTMIGHTIAIHNGKEHLPIYITDRMVGHKLGEFAPTMNFRGHAKNDNRSRR 92          
BLAST of CV712781 vs. ExPASy Swiss-Prot
Match: RR19_FAGEA (30S ribosomal protein S19, chloroplastic OS=Fagopyrum esculentum subsp. ancestrale GN=rps19 PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.248e-45
Identity = 83/92 (90.22%), Postives = 91/92 (98.91%), Query Frame = -3
Query:  333 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 608
            +TRSLKKNPFVANHLLRK+DKLNTK EKEII+TWSRASTIIPTM+GHTIAIHNGREHLP+YITDRM+GHKLGEF+PT+NFRGHAKNDNRSRR
Sbjct:    1 MTRSLKKNPFVANHLLRKLDKLNTKEEKEIIVTWSRASTIIPTMIGHTIAIHNGREHLPVYITDRMIGHKLGEFSPTLNFRGHAKNDNRSRR 92          
BLAST of CV712781 vs. ExPASy Swiss-Prot
Match: RR19_SPIOL (30S ribosomal protein S19 alpha, chloroplastic OS=Spinacia oleracea GN=rps19 PE=1 SV=4)

HSP 1 Score: 182.185 bits (461), Expect = 2.936e-45
Identity = 85/92 (92.39%), Postives = 91/92 (98.91%), Query Frame = -3
Query:  333 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 608
            +TRSLKKNPFVANHLLRKI+KLN KAEKEII+TWSRASTIIPTM+GHTIAIHNGREHLPIYITDRMVGHKLGEFAPT+NFRGHAKNDN+SRR
Sbjct:    1 MTRSLKKNPFVANHLLRKIEKLNKKAEKEIIVTWSRASTIIPTMIGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTLNFRGHAKNDNKSRR 92          
BLAST of CV712781 vs. ExPASy Swiss-Prot
Match: RR19_SOYBN (30S ribosomal protein S19, chloroplastic OS=Glycine max GN=rps19 PE=3 SV=3)

HSP 1 Score: 182.185 bits (461), Expect = 2.936e-45
Identity = 85/92 (92.39%), Postives = 92/92 (100.00%), Query Frame = -3
Query:  333 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 608
            +TRSLKKNPFVANHLLRKI+KLNTKAEK+IIITWSRASTIIPTM+GHTIAIHNG+EHLPIYITDRMVGHKLGEF+PT+NFRGHAKNDNRSRR
Sbjct:    1 MTRSLKKNPFVANHLLRKINKLNTKAEKDIIITWSRASTIIPTMIGHTIAIHNGKEHLPIYITDRMVGHKLGEFSPTLNFRGHAKNDNRSRR 92          
BLAST of CV712781 vs. ExPASy Swiss-Prot
Match: RR19_PHAVU (30S ribosomal protein S19, chloroplastic OS=Phaseolus vulgaris GN=rps19 PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 5.008e-45
Identity = 84/92 (91.30%), Postives = 92/92 (100.00%), Query Frame = -3
Query:  333 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 608
            +TRSLKKNPFVANHLLRKI+KLNTKAEK+II+TWSRASTIIPTM+GHTIAIHNG+EHLPIYITDRMVGHKLGEF+PT+NFRGHAKNDNRSRR
Sbjct:    1 MTRSLKKNPFVANHLLRKINKLNTKAEKDIILTWSRASTIIPTMIGHTIAIHNGKEHLPIYITDRMVGHKLGEFSPTLNFRGHAKNDNRSRR 92          
BLAST of CV712781 vs. ExPASy Swiss-Prot
Match: RR19_PHAAN (30S ribosomal protein S19, chloroplastic OS=Phaseolus angularis GN=rps19 PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 5.008e-45
Identity = 84/92 (91.30%), Postives = 92/92 (100.00%), Query Frame = -3
Query:  333 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 608
            +TRSLKKNPFVANHLLRKI+KLNTKAEK+II+TWSRASTIIPTM+GHTIAIHNG+EHLPIYITDRMVGHKLGEF+PT+NFRGHAKNDNRSRR
Sbjct:    1 MTRSLKKNPFVANHLLRKINKLNTKAEKDIILTWSRASTIIPTMIGHTIAIHNGKEHLPIYITDRMVGHKLGEFSPTLNFRGHAKNDNRSRR 92          
BLAST of CV712781 vs. ExPASy Swiss-Prot
Match: RR19_COFAR (30S ribosomal protein S19, chloroplastic OS=Coffea arabica GN=rps19 PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 5.008e-45
Identity = 84/92 (91.30%), Postives = 91/92 (98.91%), Query Frame = -3
Query:  333 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 608
            +TRSLKKNPFVANHLL+KIDKLNTKAEKEII+TWSRASTIIPTM+GHTI IHNG+EHLPIYITDRMVGHKLGEFAPT+NFRGHAK+DNRSRR
Sbjct:    1 MTRSLKKNPFVANHLLKKIDKLNTKAEKEIIVTWSRASTIIPTMIGHTIGIHNGKEHLPIYITDRMVGHKLGEFAPTLNFRGHAKSDNRSRR 92          
The following BLAST results are available for this feature:
BLAST of CV712781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR19_CITSI3.137e-4798.9130S ribosomal protein S19, chloroplastic OS=Citrus... [more]
RR19_EUCGG2.655e-4695.6530S ribosomal protein S19, chloroplastic OS=Eucaly... [more]
RR19_CARPA3.468e-4694.5730S ribosomal protein S19, chloroplastic OS=Carica... [more]
RR19_PLAOC7.726e-4693.4830S ribosomal protein S19, chloroplastic OS=Platan... [more]
RR19_FAGEA2.248e-4590.2230S ribosomal protein S19, chloroplastic OS=Fagopy... [more]
RR19_SPIOL2.936e-4592.3930S ribosomal protein S19 alpha, chloroplastic OS=... [more]
RR19_SOYBN2.936e-4592.3930S ribosomal protein S19, chloroplastic OS=Glycin... [more]
RR19_PHAVU5.008e-4591.3030S ribosomal protein S19, chloroplastic OS=Phaseo... [more]
RR19_PHAAN5.008e-4591.3030S ribosomal protein S19, chloroplastic OS=Phaseo... [more]
RR19_COFAR5.008e-4591.3030S ribosomal protein S19, chloroplastic OS=Coffea... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001O06_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001O06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712781 ID=CV712781; Name=CV712781; organism=Citrus sinensis; type=EST; length=802bp
CCCCTCGAGGTTTTAATCTTTTCGCAGTAGGACCCATAGCTATTCGGCTT
TAATAATGAATAAACTTCCTTCGTTGAAACCCAGATTGTGAATACCATTT
GCTGCTGCAGAATAAACCAATTTTAAAATGGGATAACATGCTCGATAAGG
CATGAGTTCGAGTATCATAAGGGTTTCCTCGTAAGAACGTCCACGAATCT
GATCAATTACCCTTCGGGCTTTGTGAGCAGACATACATATATGTTGACCT
AAAGCAGATACTTCTACCTTCTTCTTTATTATCCTTATCATAAGGTTCAC
CTCTCACCAATGAATCTATATTCACTTTATTAACGACGGGATCTATTATC
ATTTTTTGCATGTCCACGGAAATTGATAGTGGGCGCAAATTCTCCCAATT
TATGTCCTACCATACGATCTGTTATATAAATAGGCAAATGCTCCCTTCCA
TTATGGATAGCAATAGTATGGCCGACCATTGTGGGTATAATGGTAGATGC
CCGGGACCAAGTTATTATTATTTCTTTTTCCGCTTTTGTATTAAGCTTAT
CGATTTTTCTTAATAAATGATTCGCTACAAAAGGATTTTTTTTTAGTGAA
CGTGTCACAGTTAATTAACTCCTATTTTTTTCTTTTTTTTTTGTAAATTG
TAAAAACGAAGAAAAAAATTCGATTTTCTCTCCTATTTAGTACGGCGGCG
AAGAATCAAATTATCACTATATTTATTCCTTTTTCTACTTCGTCTTCCAA
GTGCAGGATAACCCCAAGGGGTTGCGGGTCTTTTTCTACCAATCGGAGCC
CT
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