CV712756

Overview
NameCV712756
Unique NameCV712756
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length739
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2939 contig Csv1_Contig2939:1..739. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CV712756 vs. ExPASy Swiss-Prot
Match: FUK_HUMAN (L-fucose kinase OS=Homo sapiens GN=FUK PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 3.149e-19
Identity = 63/199 (31.66%), Postives = 97/199 (48.74%), Query Frame = -3 
Query:    6 VDHPFQPRTVKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLIS-----DDAGNQLHIEDLTPIATPFDHNDPFRLVKSALLVTGVIH--------EKLIESM--GLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMXXXXXXXXXXXGLYPGIK 557
            V+ P   + V  E P R+DF+GGWSDTPP + E  G VL +A+ ++   PIG          + ++     D+   ++    L  +      + P  L+K+A +  G++H        E+L+ +   G ++ TW+ +P GSGLGTSSILA   + AL +        E +   VL LEQ++           GL PGIK
Sbjct:  698 VELPGPGQWVVAECPARVDFSGGWSDTPPLAYELGGAVLGLAVRVDGRRPIGARARRIPEPELWLAVGPRQDEMTVKIVCRCLADLRDYCQPHAPGALLKAAFICAGIVHVHSELQLSEQLLRTFGGGFELHTWSELPHGSGLGTSSILAGTALAALQRAAGRVVGTEALIHAVLHLEQVLTTGGGWQDQVGGLMPGIK 896
The following BLAST results are available for this feature:
BLAST of CV712756 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
FUK_HUMAN3.149e-1931.66L-fucose kinase OS=Homo sapiens GN=FUK PE=2 SV=2[more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_0001N16_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001N16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712756 ID=CV712756; Name=CV712756; organism=Citrus sinensis; type=EST; length=739bp
GTGAACTTAATGCCTGGGTACAAACCTCCAATTTGATCTTGCCAGCCACC
ACCTGTGCCCATGAGCTGCTCTAACAACAAAACAAGCCGCGCAACATTTT
CATTACTTTGATCTCCATCGGTTATCTGCAGAAGAGCTTTTACAACAGCA
GCTGCTAAGATGCTAGAAGTTCCTAAGCCACTACCACGGGGGACATTTGC
CCACGTCCTGATCTGCAAGCCCATGGATTCAATAAGTTTTTCATGAATAA
CGCCAGTTACTAGCAATGCAGATTTGACGAGCCGAAATGGATCATTATGG
TCGAAGGGAGTAGCAATGGGGGTGAGGTCTTCAATATGTAACTGGTTTCC
AGCATCATCACTAATCAATACGCCACTCATTTTTGTTGTCTCTATGATGG
TGCCAATCGGAAGAGAACTTTCCAAACTTATTGCCACATTGAGAACACAA
CCAGCACGCTCCAAACTCCAAGGAGGAGTATCACTCCAACCCCCAGCAAA
ATCTATCCGAACTGGTAATTCAACCTTTACAGTTCTTGGTTGGAAAGGAT
GATCCACAAAGCCATCATCATTTTTATTCTGATATGCTGAAGAACCTCTG
CTGAGGGGCTCCAGAAGGTATTCTACAATTAATTGGGGAAAAAAAAAGTT
GCTCGTAAACTATGGGCCGTTGAATAAGTTATGAAGATTATAAATTAACA
TTAAGATTGATCACTCTTTTATTAGTGCCTATACAGCTT
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