CX047517

Overview
NameCX047517
Unique NameCX047517
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length482
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047517 vs. ExPASy Swiss-Prot
Match: RLA01_ARATH (60S acidic ribosomal protein P0-1 OS=Arabidopsis thaliana GN=RPP0A PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 4.394e-28
Identity = 66/108 (61.11%), Postives = 75/108 (69.44%), Query Frame = 3
Query:    3 EDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDGDMGFSLF 326
            EDDLVEKFA+GVSM+TAL+LAISYPT+AAAPHMF+NAYKNV+AVALATEYSFPQA+ VKE+L DP+KF                              SDGDMGF LF
Sbjct:  211 EDDLVEKFAAGVSMITALSLAISYPTVAAAPHMFLNAYKNVLAVALATEYSFPQAENVKEFLKDPTKF--AVAVAAPVSGESGGAVVAVAVEEEAAEESDGDMGFDLF 316          
BLAST of CX047517 vs. ExPASy Swiss-Prot
Match: RLA0_SOYBN (60S acidic ribosomal protein P0 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 7.494e-28
Identity = 66/110 (60.00%), Postives = 75/110 (68.18%), Query Frame = 3
Query:    3 EDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKF-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDGDMGFSLFD 329
            EDDL+ KFA+GVSMVT+L+LAISYPTLAAAPHMF+NAYKNV+AVA+ T+YSFP+ADKVKEYL DPSKF                               SD DMGFSLFD
Sbjct:  211 EDDLIGKFAAGVSMVTSLSLAISYPTLAAAPHMFVNAYKNVLAVAVETDYSFPEADKVKEYLKDPSKFAVAAVAAPAAASGAPAAAAKEEEKKEEPAEESDDDMGFSLFD 320          
BLAST of CX047517 vs. ExPASy Swiss-Prot
Match: RLA0_ORYSJ (60S acidic ribosomal protein P0 OS=Oryza sativa subsp. japonica GN=Os08g0130500 PE=1 SV=3)

HSP 1 Score: 122.865 bits (307), Expect = 7.494e-28
Identity = 62/109 (56.88%), Postives = 73/109 (66.97%), Query Frame = 3
Query:    3 EDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDGDMGFSLFD 329
            EDDL+EKFASGVSMV +++LAISYPT+AAAPHMF+N YKNV+AVA+ TEYS+P ADK+KEYL DPSKF                              SDGD+G SLFD
Sbjct:  211 EDDLMEKFASGVSMVASVSLAISYPTIAAAPHMFLNGYKNVLAVAVETEYSYPHADKIKEYLKDPSKFAVAAPVAADSGAAAPSAAKEEEKKEEPEEESDGDLGMSLFD 319          
BLAST of CX047517 vs. ExPASy Swiss-Prot
Match: RLA02_ARATH (60S acidic ribosomal protein P0-2 OS=Arabidopsis thaliana GN=RPP0B PE=1 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 2.181e-27
Identity = 57/68 (83.82%), Postives = 65/68 (95.59%), Query Frame = 3
Query:    3 EDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKF 206
            ED LVEKFASG+SMVT+LALA+SYPTLAAAPHMFINAYKN +A+A+ATEY+FPQA+KVKEYL DPSKF
Sbjct:  210 EDQLVEKFASGISMVTSLALAVSYPTLAAAPHMFINAYKNALAIAVATEYTFPQAEKVKEYLKDPSKF 277          
BLAST of CX047517 vs. ExPASy Swiss-Prot
Match: RLA03_ARATH (60S acidic ribosomal protein P0-3 OS=Arabidopsis thaliana GN=RPP0C PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.413e-26
Identity = 55/68 (80.88%), Postives = 65/68 (95.59%), Query Frame = 3
Query:    3 EDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKF 206
            ED LVEKFASG+SMVT+LALA+SYPTLAAAPHMFINAYKN +A+A+AT+Y+FPQA+KVKE+L DPSKF
Sbjct:  210 EDQLVEKFASGISMVTSLALAVSYPTLAAAPHMFINAYKNALAIAVATDYTFPQAEKVKEFLKDPSKF 277          
BLAST of CX047517 vs. ExPASy Swiss-Prot
Match: RLA0_MAIZE (60S acidic ribosomal protein P0 OS=Zea mays GN=RP-P0 PE=1 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 1.196e-25
Identity = 61/109 (55.96%), Postives = 72/109 (66.06%), Query Frame = 3
Query:    3 EDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDGDMGFSLFD 329
            E+DL+EKFA+GVSMV +L+LAISYPTLAA PHMFIN YKNV+AVA+ T+YS+P ADK+KEYL DPSKF                              SD +MGFSLFD
Sbjct:  211 EEDLIEKFATGVSMVASLSLAISYPTLAAVPHMFINGYKNVLAVAVETDYSYPHADKIKEYLKDPSKF-AVAAPVAAGDSGASAAPKEEEKAAEPEEESDEEMGFSLFD 318          
BLAST of CX047517 vs. ExPASy Swiss-Prot
Match: RLA0_LUPLU (60S acidic ribosomal protein P0 OS=Lupinus luteus PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 4.869e-19
Identity = 55/111 (49.55%), Postives = 63/111 (56.76%), Query Frame = 3
Query:    3 EDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKF--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDGDMGFSLFD 329
            EDDL+EKFA GVS       +   P  +AAPH+FINAYKNV+AVA+ATEYSFPQAD+VKEYL DPSKF                                SD +MGF LFD
Sbjct:  211 EDDLLEKFAIGVSQCYFSDTSHFIPNPSAAPHVFINAYKNVLAVAVATEYSFPQADEVKEYLKDPSKFAAVAAAAAPAADSGAAPAAAAKAEKEEEPAEESDDEMGFGLFD 321          
BLAST of CX047517 vs. ExPASy Swiss-Prot
Match: RLA0_DANRE (60S acidic ribosomal protein P0 OS=Danio rerio GN=rplp0 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.732e-16
Identity = 45/109 (41.28%), Postives = 57/109 (52.29%), Query Frame = 3
Query:    3 EDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDGDMGFSLFD 329
            ED L ++F  GV  + ++ L I YPTLA+ PH  IN YK V+AV + T+Y+FP A+KVK YLADP+ F                              SD DMGF LFD
Sbjct:  211 EDALHKRFLKGVRNIASVCLQIGYPTLASIPHTIINGYKRVLAVTVETDYTFPLAEKVKAYLADPTAFAVAAPVAAATEQKSAAPAAKEEAPKEDSEESDEDMGFGLFD 319          
BLAST of CX047517 vs. ExPASy Swiss-Prot
Match: RLA0_CHICK (60S acidic ribosomal protein P0 OS=Gallus gallus GN=RPLP0 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.262e-16
Identity = 44/109 (40.37%), Postives = 58/109 (53.21%), Query Frame = 3
Query:    3 EDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDGDMGFSLFD 329
            E+ L ++F  GV  V ++ L I YPT+A+ PH  +N YK V+AVA+ T+Y+FP A+KVK +LADPS F                              SD DMGF LFD
Sbjct:  208 EETLHKRFLEGVRNVASVCLQIGYPTIASVPHSIVNGYKRVLAVAVETDYTFPLAEKVKAFLADPSAFVAAAPVVVETAAPAAAAAPAKEAPKEESEESDEDMGFGLFD 316          
BLAST of CX047517 vs. ExPASy Swiss-Prot
Match: RLA0_ICTPU (60S acidic ribosomal protein P0 OS=Ictalurus punctatus GN=rplp0 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.122e-15
Identity = 38/68 (55.88%), Postives = 49/68 (72.06%), Query Frame = 3
Query:    3 EDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKF 206
            ED L ++F  GV  + ++ L I YPTLA+ PH  IN YK V+ VA+ T+YSFP ADKVK +LADPS+F
Sbjct:  208 EDALHKRFLEGVRNIASVCLQIGYPTLASIPHSIINGYKRVLRVAVETDYSFPMADKVKAFLADPSRF 275          
The following BLAST results are available for this feature:
BLAST of CX047517 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
RLA01_ARATH4.394e-2861.1160S acidic ribosomal protein P0-1 OS=Arabidopsis t... [more]
RLA0_SOYBN7.494e-2860.0060S acidic ribosomal protein P0 OS=Glycine max PE=... [more]
RLA0_ORYSJ7.494e-2856.8860S acidic ribosomal protein P0 OS=Oryza sativa su... [more]
RLA02_ARATH2.181e-2783.8260S acidic ribosomal protein P0-2 OS=Arabidopsis t... [more]
RLA03_ARATH1.413e-2680.8860S acidic ribosomal protein P0-3 OS=Arabidopsis t... [more]
RLA0_MAIZE1.196e-2555.9660S acidic ribosomal protein P0 OS=Zea mays GN=RP-... [more]
RLA0_LUPLU4.869e-1949.5560S acidic ribosomal protein P0 OS=Lupinus luteus ... [more]
RLA0_DANRE1.732e-1641.2860S acidic ribosomal protein P0 OS=Danio rerio GN=... [more]
RLA0_CHICK2.262e-1640.3760S acidic ribosomal protein P0 OS=Gallus gallus G... [more]
RLA0_ICTPU1.122e-1555.8860S acidic ribosomal protein P0 OS=Ictalurus punct... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_14F06_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-14F06-L11-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047517 ID=CX047517; Name=CX047517; organism=Citrus sinensis; type=EST; length=482bp
CTGAAGATGACCTAGTGGAGAAGTTCGCCTCAGGTGTATCAATGGTCACC
GCTCTGGCACTTGCCATCTCATACCCAACCCTGGCAGCTGCTCCACACAT
GTTCATCAATGCATACAAGAATGTGGTTGCTGTTGCTCTTGCAACTGAGT
ATTCATTCCCTCAGGCTGACAAAGTGAAGGAGTACCTGGCGGACCCAAGC
AAGTTTGCTGTTGCTGCTGCCCCGGTTGCTGGCGGTGGTGATGCCCCAGC
TGCTGCTGCAAAGGAGGAAGAGAAGAAGGAAGAGCCTGCTGAGGAGTCTG
ATGGAGATATGGGCTTCAGCTTGTTCGACTAAGTGCACTGTCATTTGTGC
TATAACTTAGGATTTTGACGTTTATGGTTATGTTTTTGGTTTTGTTTGCT
TTATTTTCTTAATGCTTTTTGTAGACTCAGTTTCCTTTTTATTTTATATA
ATCCTTTATTTAGGACAAAAAAAAAAAAAAAA
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