CV712730

Overview
NameCV712730
Unique NameCV712730
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length721
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3685 contig Csv1_Contig3685:657..1377. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712730 vs. ExPASy Swiss-Prot
Match: SERC_ARATH (Phosphoserine aminotransferase, chloroplastic OS=Arabidopsis thaliana GN=At4g35630 PE=2 SV=1)

HSP 1 Score: 303.908 bits (777), Expect = 5.606e-82
Identity = 150/184 (81.52%), Postives = 163/184 (88.59%), Query Frame = -2
Query:  169 CSKPVDVTRFGVIYAGAQKNVGPSGVTIVIVRKDLLGNAQDKTPLMLDYKIHDENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXKMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKHA 720
            CSKPVDV++FGVIY GAQKNVGPSGVTIVI+RKDL+GNAQD TP+MLDYKIHDEN+SLYNTPPC+ IYMCGLVFE LLE GGL EVEK N++KA+LLYN I+ SNGF+RCPVEKSVRS MNVPFTLEKS+L           KMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKHA
Sbjct:  247 CSKPVDVSKFGVIYGGAQKNVGPSGVTIVIIRKDLIGNAQDITPVMLDYKIHDENSSLYNTPPCFGIYMCGLVFEDLLEQGGLKEVEKKNQRKADLLYNAIEESNGFFRCPVEKSVRSLMNVPFTLEKSELEAEFIKEAAKEKMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKHA 430          
BLAST of CV712730 vs. ExPASy Swiss-Prot
Match: SERC_SPIOL (Phosphoserine aminotransferase, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 6.414e-78
Identity = 145/184 (78.80%), Postives = 157/184 (85.33%), Query Frame = -2
Query:  169 CSKPVDVTRFGVIYAGAQKNVGPSGVTIVIVRKDLLGNAQDKTPLMLDYKIHDENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXKMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKHA 720
            CSKPVDVT+FG+IYAGAQKNVGPSGVTIVIVR DL+GNAQ  TP+MLDYKIH +N SLYNTPPCY IYMCGLVFE LL  GGL EVEK N+ KA++LY+ ID SNGFY+CPVEKSVRS MNVPFTLEKS+L           KMV LKGHRSVGGMRASIYNAMPLAGVEKLVAFMK+FQAKHA
Sbjct:  247 CSKPVDVTKFGLIYAGAQKNVGPSGVTIVIVRNDLIGNAQKMTPVMLDYKIHADNKSLYNTPPCYGIYMCGLVFEDLLNQGGLVEVEKKNKAKAQVLYDAIDESNGFYKCPVEKSVRSLMNVPFTLEKSELEGDFIKEAAKEKMVALKGHRSVGGMRASIYNAMPLAGVEKLVAFMKEFQAKHA 430          
BLAST of CV712730 vs. ExPASy Swiss-Prot
Match: SERC_LARHH (Phosphoserine aminotransferase OS=Laribacter hongkongensis (strain HLHK9) GN=serC PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 4.046e-56
Identity = 105/182 (57.69%), Postives = 133/182 (73.08%), Query Frame = -2
Query:  172 SKPVDVTRFGVIYAGAQKNVGPSGVTIVIVRKDLLGNAQDKTPLMLDYKIHDENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXKMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 717
            S+PVDV+RFG+I+AGAQKN+GP+G+T+VIVR+DLLG     TP M DYKIH + +S+YNTPP Y IYM GLVF++L + GG+  ++  N +KA LLY+ ID S+GFYRCPV+   RS MNVPF L    L            ++QLKGHRSVGG+RASIYNAMP  GV+ LVAFM +F  +H
Sbjct:  177 SRPVDVSRFGLIFAGAQKNIGPAGLTLVIVREDLLGQTLPGTPTMFDYKIHADADSMYNTPPTYAIYMAGLVFQWLKDNGGVRGIQMRNEEKAGLLYHTIDSSDGFYRCPVDVECRSRMNVPFRLRTEVLEKRFVDEADMAGLLQLKGHRSVGGVRASIYNAMPFEGVKALVAFMAEFARRH 358          
BLAST of CV712730 vs. ExPASy Swiss-Prot
Match: SERC_ACIF5 (Phosphoserine aminotransferase OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=serC PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 7.141e-53
Identity = 101/182 (55.49%), Postives = 132/182 (72.53%), Query Frame = -2
Query:  172 SKPVDVTRFGVIYAGAQKNVGPSGVTIVIVRKDLLGNAQDKTPLMLDYKIHDENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXKMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 717
            SKP DV+RFG+IYAGAQKN+GP+G+T+VIVR DLLG+A   T  MLDY ++ +  S++NTPP + IY+ GLVF++L +LGGL  + ++N +KA LLY+ ID S GFY  PVE   RS MNVPFTL  + +            ++QLKGHRSVGGMRASIYNAMP AGV+ L  +++DF  +H
Sbjct:  180 SKPTDVSRFGLIYAGAQKNIGPAGLTLVIVRDDLLGHAPANTATMLDYAVYAKEESMHNTPPTFAIYVAGLVFKWLKQLGGLERMAEINARKARLLYDAIDESRGFYANPVETRNRSRMNVPFTLADAAMDEAFLKGARSHGLIQLKGHRSVGGMRASIYNAMPEAGVQILADYLRDFARQH 361          
BLAST of CV712730 vs. ExPASy Swiss-Prot
Match: SERC_ACIF2 (Phosphoserine aminotransferase OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=serC PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 7.141e-53
Identity = 101/182 (55.49%), Postives = 132/182 (72.53%), Query Frame = -2
Query:  172 SKPVDVTRFGVIYAGAQKNVGPSGVTIVIVRKDLLGNAQDKTPLMLDYKIHDENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXKMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 717
            SKP DV+RFG+IYAGAQKN+GP+G+T+VIVR DLLG+A   T  MLDY ++ +  S++NTPP + IY+ GLVF++L +LGGL  + ++N +KA LLY+ ID S GFY  PVE   RS MNVPFTL  + +            ++QLKGHRSVGGMRASIYNAMP AGV+ L  +++DF  +H
Sbjct:  180 SKPTDVSRFGLIYAGAQKNIGPAGLTLVIVRDDLLGHAPANTATMLDYAVYAKEESMHNTPPTFAIYVAGLVFKWLKQLGGLERMAEINARKARLLYDAIDESRGFYANPVETRNRSRMNVPFTLADAAMDEAFLKGARSHGLIQLKGHRSVGGMRASIYNAMPEAGVQILADYLRDFARQH 361          
BLAST of CV712730 vs. ExPASy Swiss-Prot
Match: SERC_THIDA (Phosphoserine aminotransferase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=serC PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.759e-51
Identity = 100/182 (54.95%), Postives = 130/182 (71.43%), Query Frame = -2
Query:  172 SKPVDVTRFGVIYAGAQKNVGPSGVTIVIVRKDLLGNAQDKTPLMLDYKIHDENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXKMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 717
            S+P+DV+++GVIYAGAQKN+GP+G+TIVIVR+DL+G     TP M DYKIH +N S+YNTP  + +Y  GLVF++L   GGL  +EK+NR+KA LLY  +D ++ FY  PV K  RS MNVPFTL+ + L            ++QLKGHRSVGGMRASIYNAMP  GV+ LV ++  F+  H
Sbjct:  178 SRPIDVSKYGVIYAGAQKNIGPAGLTIVIVREDLMGETVAGTPTMFDYKIHADNESMYNTPATFAMYTAGLVFKWLKARGGLAGMEKINREKAALLYEALDATD-FYASPVAKDNRSLMNVPFTLKDAALDEAFLKGAKERGLLQLKGHRSVGGMRASIYNAMPTEGVKALVDYLHAFEKNH 358          
BLAST of CV712730 vs. ExPASy Swiss-Prot
Match: SERC_PSEMY (Phosphoserine aminotransferase OS=Pseudomonas mendocina (strain ymp) GN=serC PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.759e-51
Identity = 100/183 (54.64%), Postives = 131/183 (71.58%), Query Frame = -2
Query:  169 SKPVDVTRFGVIYAGAQKNVGPSGVTIVIVRKDLLGNAQDKTPLMLDYKIHDENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXKMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKHA 717
            S+P+DV++FG+IYAGAQKN+GPSG+ +VIVR+DLLG A+   P MLDYKI  +N S+YNTP  Y  Y+ GLVF++L E GG+  +E++NR K +LLY  IDGS+ FY  P+  + RS+MNVPF L    L            ++ LKGHRSVGGMRASIYNA+ L  VE LVA+M +F+ +HA
Sbjct:  180 SRPIDVSQFGLIYAGAQKNIGPSGLVVVIVREDLLGRARSSCPTMLDYKISADNGSMYNTPATYSWYLSGLVFQWLKEQGGVEAMERINRAKKDLLYKAIDGSD-FYSNPIAHNARSWMNVPFRLADEKLDKAFLAGADERGLLNLKGHRSVGGMRASIYNAVGLDAVEALVAYMAEFEKEHA 361          
BLAST of CV712730 vs. ExPASy Swiss-Prot
Match: SERC_NITEU (Phosphoserine aminotransferase OS=Nitrosomonas europaea GN=serC PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 5.118e-51
Identity = 103/184 (55.98%), Postives = 131/184 (71.20%), Query Frame = -2
Query:  169 SKPVDVTRFGVIYAGAQKNVGPSGVTIVIVRKDLLGNAQ-DKTPLMLDYKIHDENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXKMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKHA 717
            S+P DV++FG+IYAGAQKNVGP+G+ +VIVR+DLL       TP M  YK H +N S+YNTPP Y IY+ GLV E+L + GGL  +E+ N  KA+L+Y++ID S+ FY CPV ++ RS MNVPFTL    L            ++QLKGHRSVGGMRASIYNAMPL GV+ LV FM++F+  HA
Sbjct:  186 SRPFDVSKFGLIYAGAQKNVGPAGLVVVIVREDLLDIPPLAGTPAMFRYKTHADNASMYNTPPTYAIYIMGLVMEWLKKQGGLTAIEQRNIAKAKLIYDLIDVSS-FYHCPVNQADRSRMNVPFTLSDPGLDDAFLKQAQAHGLIQLKGHRSVGGMRASIYNAMPLEGVQTLVTFMREFEKNHA 368          
BLAST of CV712730 vs. ExPASy Swiss-Prot
Match: SERC_YERPY (Phosphoserine aminotransferase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=serC PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.489e-50
Identity = 98/182 (53.85%), Postives = 130/182 (71.43%), Query Frame = -2
Query:  172 SKPVDVTRFGVIYAGAQKNVGPSGVTIVIVRKDLLGNAQDKTPLMLDYKIHDENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXKMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 717
            S+P+D++R+GVIYAGAQKN+GP+G+T+VIVR+DLLG A    P +LDYK+  +N+S++NTPP +  Y+ GLVF++L E GGL E+EK N+ KAELLY  ID   GFYR  V  + RS+MNVPF + ++ L            +  LKGHR  GGMRASIYNAMP+ GV+ L  FM DF+ +H
Sbjct:  180 SRPIDISRYGVIYAGAQKNIGPAGLTLVIVREDLLGKAHTALPSILDYKVLADNDSMFNTPPTFAWYLSGLVFKWLKEQGGLGEMEKRNQAKAELLYGAID-RTGFYRNQVAIANRSWMNVPFQMAEASLDKLFLSEAEAQGLQALKGHRVAGGMRASIYNAMPIEGVKALTDFMADFERRH 360          
BLAST of CV712730 vs. ExPASy Swiss-Prot
Match: SERC_YERPS (Phosphoserine aminotransferase OS=Yersinia pseudotuberculosis GN=serC PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.489e-50
Identity = 98/182 (53.85%), Postives = 130/182 (71.43%), Query Frame = -2
Query:  172 SKPVDVTRFGVIYAGAQKNVGPSGVTIVIVRKDLLGNAQDKTPLMLDYKIHDENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXKMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 717
            S+P+D++R+GVIYAGAQKN+GP+G+T+VIVR+DLLG A    P +LDYK+  +N+S++NTPP +  Y+ GLVF++L E GGL E+EK N+ KAELLY  ID   GFYR  V  + RS+MNVPF + ++ L            +  LKGHR  GGMRASIYNAMP+ GV+ L  FM DF+ +H
Sbjct:  180 SRPIDISRYGVIYAGAQKNIGPAGLTLVIVREDLLGKAHTALPSILDYKVLADNDSMFNTPPTFAWYLSGLVFKWLKEQGGLGEMEKRNQAKAELLYGAID-RTGFYRNQVAIANRSWMNVPFQMAEASLDKLFLSEAEAQGLQALKGHRVAGGMRASIYNAMPIEGVKALTDFMADFERRH 360          
The following BLAST results are available for this feature:
BLAST of CV712730 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 255
Match NameE-valueIdentityDescription
SERC_ARATH5.606e-8281.52Phosphoserine aminotransferase, chloroplastic OS=A... [more]
SERC_SPIOL6.414e-7878.80Phosphoserine aminotransferase, chloroplastic OS=S... [more]
SERC_LARHH4.046e-5657.69Phosphoserine aminotransferase OS=Laribacter hongk... [more]
SERC_ACIF57.141e-5355.49Phosphoserine aminotransferase OS=Acidithiobacillu... [more]
SERC_ACIF27.141e-5355.49Phosphoserine aminotransferase OS=Acidithiobacillu... [more]
SERC_THIDA1.759e-5154.95Phosphoserine aminotransferase OS=Thiobacillus den... [more]
SERC_PSEMY1.759e-5154.64Phosphoserine aminotransferase OS=Pseudomonas mend... [more]
SERC_NITEU5.118e-5155.98Phosphoserine aminotransferase OS=Nitrosomonas eur... [more]
SERC_YERPY1.489e-5053.85Phosphoserine aminotransferase OS=Yersinia pseudot... [more]
SERC_YERPS1.489e-5053.85Phosphoserine aminotransferase OS=Yersinia pseudot... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001N03_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001N03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712730 ID=CV712730; Name=CV712730; organism=Citrus sinensis; type=EST; length=721bp
TTTTTAGCCAGAAAAATACTCAACTACCATACCACGTTAAAAAGCAACAA
AAACATAAATAAGACAGACAAGAGAAAAACCAAAATCCTACATATTTTTC
TACTAAAAAAAAGGACTCTGGATTCAAGCCACAGCCAAAGCCAATCAACA
ACACTAAAGCAAAAATCAAGCATGCTTTGCCTGGAAATCCTTCATGAAAG
CAACCAACTTCTCAACGCCAGCCAAAGGCATAGCATTATATATTGAAGCC
CTCATTCCTCCAACTGACCTATGCCCCTTCAATTGCACCATCTTCTCCTT
AGCAGCTTCCTTCACAAACTCAGCTTCCAAATCAGACTTCTCCAGAGTAA
ACGGCACATTCATGAATGACCTCACAGATTTCTCAACTGGGCATCTATAG
AACCCGTTGCTTCCGTCAATGACGTTGTATAACAATTCAGCCTTCTTCCT
GTTCATCTTCTCAACTTCATTCAACCCACCCAATTCTAGCAAATACTCAA
AAACTAATCCACACATGTAGATACAATAACAAGGCGGTGTATTGTAAAGT
GAATTGTTTTCATCGTGAATCTTATAATCCAACATCAGAGGAGTCTTGTC
TTGAGCATTTCCAAGCAGATCCTTCCTAACAATCACGATTGTGACCCCAG
ATGGCCCCACGTTTTTCTGAGCTCCAGCATAAATTACACCAAACCTGGTA
ACATCAACAGGCTTTGAACAA
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