CV712727

Overview
NameCV712727
Unique NameCV712727
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length466
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig989 contig Csv1_Contig989:19..485. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712727 vs. ExPASy Swiss-Prot
Match: METE_SOLSC (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Solenostemon scutellarioides GN=MET PE=1 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 2.918e-26
Identity = 59/61 (96.72%), Postives = 59/61 (96.72%), Query Frame = -2
Query:  283 IPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYIEVKPALSNMVAAAKLLRTQLASAK 465
            IPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKY EVKPAL NMVAAAKLLRTQLASAK
Sbjct:  704 IPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYAEVKPALENMVAAAKLLRTQLASAK 764          
BLAST of CV712727 vs. ExPASy Swiss-Prot
Match: METE_CATRO (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Catharanthus roseus GN=METE PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.471e-25
Identity = 56/61 (91.80%), Postives = 59/61 (96.72%), Query Frame = -2
Query:  283 IPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYIEVKPALSNMVAAAKLLRTQLASAK 465
            IPSTEEIADRINKMLAVL+TNILWVNPDCGLKTRKY EVKPAL NMV+AAKL+RTQLASAK
Sbjct:  705 IPSTEEIADRINKMLAVLDTNILWVNPDCGLKTRKYAEVKPALENMVSAAKLIRTQLASAK 765          
BLAST of CV712727 vs. ExPASy Swiss-Prot
Match: METE_ARATH (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Arabidopsis thaliana GN=CIMS PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.356e-23
Identity = 53/61 (86.89%), Postives = 57/61 (93.44%), Query Frame = -2
Query:  283 IPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYIEVKPALSNMVAAAKLLRTQLASAK 465
            IPS+EEIADR+NKMLAVLE NILWVNPDCGLKTRKY EVKPAL NMV AAKL+R+QLASAK
Sbjct:  705 IPSSEEIADRVNKMLAVLEQNILWVNPDCGLKTRKYTEVKPALKNMVDAAKLIRSQLASAK 765          
BLAST of CV712727 vs. ExPASy Swiss-Prot
Match: METE_MESCR (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Mesembryanthemum crystallinum GN=METE PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 5.696e-22
Identity = 51/61 (83.61%), Postives = 55/61 (90.16%), Query Frame = -2
Query:  283 IPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYIEVKPALSNMVAAAKLLRTQLASAK 465
            IP TEE+ADRI KMLAVLE+N+LWVNPDCGLKTRKY EV PALSNMVAAAK LR +LASAK
Sbjct:  705 IPPTEELADRIRKMLAVLESNVLWVNPDCGLKTRKYGEVNPALSNMVAAAKQLRQELASAK 765          
BLAST of CV712727 vs. ExPASy Swiss-Prot
Match: METE_CYTH3 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=metE PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 9.114e-12
Identity = 31/59 (52.54%), Postives = 45/59 (76.27%), Query Frame = -2
Query:  289 IPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYIEVKPALSNMVAAAKLLRTQLAS 465
            IP+T+E+AD +NK + VL    +WVNPDCGLKTR++ E + AL NMVAAA+ +R ++ +
Sbjct:  715 IPTTDEMADLLNKAMHVLPVRNIWVNPDCGLKTRRWPETEAALINMVAAAQKIRKEITT 773          
BLAST of CV712727 vs. ExPASy Swiss-Prot
Match: METE_BLOPB (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Blochmannia pennsylvanicus (strain BPEN) GN=metE PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.908e-11
Identity = 30/59 (50.85%), Postives = 43/59 (72.88%), Query Frame = -2
Query:  286 PSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYIEVKPALSNMVAAAKLLRTQLASA 462
            P+  ++  RIN++L  +    LW+NPDCGLKTR + E+K +L+NMV+AAKLLR Q  S+
Sbjct:  706 PTQNDLIRRINQLLKYIPEQRLWINPDCGLKTRSWPEIKHSLNNMVSAAKLLRKQFYSS 764          
BLAST of CV712727 vs. ExPASy Swiss-Prot
Match: METE_BIFAA (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083) GN=metE PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.908e-11
Identity = 31/58 (53.45%), Postives = 42/58 (72.41%), Query Frame = -2
Query:  292 IPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYIEVKPALSNMVAAAKLLRTQLA 465
            IPS +EI DRI ++L  ++   +W+NPDCGLKTR   E  P+L N+VAAAK +R +LA
Sbjct:  710 IPSEQEIEDRIYEILKKMDVEKVWINPDCGLKTRGNAETWPSLENLVAAAKAVRAKLA 767          
BLAST of CV712727 vs. ExPASy Swiss-Prot
Match: METE_BURVG (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=metE PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.716e-11
Identity = 32/57 (56.14%), Postives = 40/57 (70.18%), Query Frame = -2
Query:  295 IPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYIEVKPALSNMVAAAKLLRTQL 465
            IP+ E I   + K    +    LWVNPDCGLKTR++ EV PAL+NMVAAAK LR++L
Sbjct:  707 IPTQEHIVGLMRKAAERIPAQRLWVNPDCGLKTRRWAEVLPALTNMVAAAKTLRSEL 763          
The following BLAST results are available for this feature:
BLAST of CV712727 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
METE_SOLSC2.918e-2696.725-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_CATRO2.471e-2591.805-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_ARATH1.356e-2386.895-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_MESCR5.696e-2283.615-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_CYTH39.114e-1252.545-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BLOPB5.908e-1150.855-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BIFAA5.908e-1153.455-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURVG7.716e-1156.145-methyltetrahydropteroyltriglutamate--homocystein... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_0001N02_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001N02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712727 ID=CV712727; Name=CV712727; organism=Citrus sinensis; type=EST; length=466bp
AGGCAAAGGCAACAACATTAATGCACAAACCAGTAAAGGTATTCCATCGA
TTTACGGCCACTGATAGCAAGCCAGGGCCTTTAAAAACAGAAAATACAAG
CAAAGAAAAATAGAAGCCGATTGCTCAAAAGTGCATAATATGCCTACGGA
AAATTTTCATCACATCACGACCCACAGTTATTCGAATAGGTAGGTAATAA
GACAGGAATTTTCTTTCTTTGTTTAAAGTGAAAAAAAAATCAATGGCTCA
GGAAGTATCCCTCCAATCTCTGGAACCACTCACTTGGCACTGGCAAGCTG
GGTGCGGAGTAGCTTGGCAGCAGCAACCATGTTTGAGAGGGCTGGCTTCA
CCTCAATGTACTTGCGAGTCTTAAGACCACAGTCAGGGTTAACCCACAAA
ATGTTGGTTTCTAGCACAGCAAGCATCTTGTTGATTCTGTCAGCAATTTC
TTCAGTTGATGGTATT
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