CV712704
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CV712704 vs. ExPASy Swiss-Prot
Match: XRN3_ARATH (5'-3' exoribonuclease 3 OS=Arabidopsis thaliana GN=XRN3 PE=2 SV=1) HSP 1 Score: 218.009 bits (554), Expect = 4.463e-56 Identity = 101/172 (58.72%), Postives = 127/172 (73.84%), Query Frame = 2 Query: 2 LFVLLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSDGMNGYISPCAGDPHPPVFRSPVASMEDIMGNQVLCAIYKLPDAHKHVTRPPAGVIFPKKIVQLEDLKPAPVLWHEDSGRRPHEN--------------GRHNPHGTISGRQLGEAAHRLVANSLQHMKVDR 475 LF+ SH L+ +++LD HC+QL +ERV+ K ++ P+LSDGMNGY++PC+G+ HPPVFRSP+ MEDI+ NQV+C IY+LPDAH+H+TRPP GVIFPKK V + DLKP P LWHED+GRRP N GR NP G++SGR LG AAHRLV+NSLQ M DR Sbjct: 707 LFIATSHRLAELVFSLDNHCRQLSARERVDFKVKIKPKLSDGMNGYLTPCSGETHPPVFRSPMEGMEDILTNQVICCIYRLPDAHEHITRPPPGVIFPKKTVDIGDLKPPPALWHEDNGRRPMHNNHGMHNNHGMHNNQGRQNPPGSVSGRHLGNAAHRLVSNSLQ-MGTDR 877
BLAST of CV712704 vs. ExPASy Swiss-Prot
Match: XRN2_ARATH (5'-3' exoribonuclease 2 OS=Arabidopsis thaliana GN=XRN2 PE=2 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 2.231e-31 Identity = 71/158 (44.94%), Postives = 97/158 (61.39%), Query Frame = 2 Query: 2 LFVLLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSDGMNGYISPCAGDPHPPVFRSPVASMEDIMGNQVLCAIYKLPD--AHKHVTRPPAGVIFPKKIVQLEDLKPAPVLWHEDSGRRPH-----ENGRHNPHGTISGRQLGEAAHRLVANSL 454 LFV+ SHPL I +L+ L +ER + E+++P LSDGMNGYI+ C GD P F S V MED++ NQV+CAIYKLP+ +T + PKK + L DLK +LWHED +R + R+NP G+ISG +LG+A+HRLV ++ Sbjct: 699 LFVVASHPLGELIRSLNSRTNNLSNEERATIIEKIDPGLSDGMNGYIASCGGDSQPSCFCSTVEGMEDVLTNQVICAIYKLPEDIRGSEITHQIPRLAIPKKTISLVDLKSGGLLWHEDGDKRRAPPKVIKIKRYNPEGSISGGRLGKASHRLVLQTI 856
BLAST of CV712704 vs. ExPASy Swiss-Prot
Match: XRN4_ARATH (5'-3' exoribonuclease 4 OS=Arabidopsis thaliana GN=XRN4 PE=2 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.959e-19 Identity = 80/259 (30.89%), Postives = 108/259 (41.70%), Query Frame = 2 Query: 2 LFVLLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSDGMNGYISPCAGDPHPPVFRSPVASMEDIMGNQVLCAIYKLPDAHKHVTRPPAGVIFPKKIVQLEDLKPAPVLWHED-SGRRPHENGRHNPHGTISGRQLGEAAHRLVANSLQHMK---------VDRNGYGDRMHGXXXXXXXXXXXXXXXXXQEYGVYDQGYNRFSQPRTDSYPAGHSQSSI-------SAAQPPYDGGYSQHYASNTSHHPNRRYH 727 L+V +HPL I + + E + ++P S GMNG++ + SPV + I N+ L Y P H H++ PP G I P KI+ D+KP P LWHED S RR R G I+G LGEAAHRL+ N+L +MK +D NGY + G YG G NR P Y + S ++ Q ++ G Y SN S NR Y+ Sbjct: 613 LYVHPAHPLGQRILQYYHFYQHMPPHECLPWM--IDPNSSQGMNGFLWFSERNGFQTRVDSPVNGLPCIEQNRALNVTYLCPAKHSHISEPPRGAIIPDKILTSVDIKPFPPLWHEDNSNRRRQARDRPQVVGAIAGPSLGEAAHRLIKNTL-NMKSSTGAASGLIDPNGYYRNVPG----------------NYSYG----GVNRPRAPGPSPYRKAYDDDSSYYYGKYNNSTQGTFNNGPRYPYPSNGSQDYNRNYN 848
BLAST of CV712704 vs. ExPASy Swiss-Prot
Match: CR2_HORVU (Cold-regulated protein 2 (Fragment) OS=Hordeum vulgare PE=2 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.658e-18 Identity = 44/75 (58.67%), Postives = 54/75 (72.00%), Query Frame = 2 Query: 17 SHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSDGMNGYISPCAGDPHPPVFRSPVASMEDIMGNQVLCAIYK 241 +HP+S IY+L L K+R E+KE+L+P S GMNGYIS C GDP P VFRSPV +EDIM NQV+C+IYK Sbjct: 2 AHPISPYIYSLSSKFGHLADKDRNEIKEQLDPSASGGMNGYISLCGGDPSPLVFRSPVDGLEDIMDNQVICSIYK 76 The following BLAST results are available for this feature:
BLAST of CV712704 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 4
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CV712704 ID=CV712704; Name=CV712704; organism=Citrus sinensis; type=EST; length=762bpback to top |