CV712704

Overview
NameCV712704
Unique NameCV712704
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length762
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13573 contig Csv1_Contig13573:143..913. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712704 vs. ExPASy Swiss-Prot
Match: XRN3_ARATH (5'-3' exoribonuclease 3 OS=Arabidopsis thaliana GN=XRN3 PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 4.463e-56
Identity = 101/172 (58.72%), Postives = 127/172 (73.84%), Query Frame = 2
Query:    2 LFVLLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSDGMNGYISPCAGDPHPPVFRSPVASMEDIMGNQVLCAIYKLPDAHKHVTRPPAGVIFPKKIVQLEDLKPAPVLWHEDSGRRPHEN--------------GRHNPHGTISGRQLGEAAHRLVANSLQHMKVDR 475
            LF+  SH L+  +++LD HC+QL  +ERV+ K ++ P+LSDGMNGY++PC+G+ HPPVFRSP+  MEDI+ NQV+C IY+LPDAH+H+TRPP GVIFPKK V + DLKP P LWHED+GRRP  N              GR NP G++SGR LG AAHRLV+NSLQ M  DR
Sbjct:  707 LFIATSHRLAELVFSLDNHCRQLSARERVDFKVKIKPKLSDGMNGYLTPCSGETHPPVFRSPMEGMEDILTNQVICCIYRLPDAHEHITRPPPGVIFPKKTVDIGDLKPPPALWHEDNGRRPMHNNHGMHNNHGMHNNQGRQNPPGSVSGRHLGNAAHRLVSNSLQ-MGTDR 877          
BLAST of CV712704 vs. ExPASy Swiss-Prot
Match: XRN2_ARATH (5'-3' exoribonuclease 2 OS=Arabidopsis thaliana GN=XRN2 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.231e-31
Identity = 71/158 (44.94%), Postives = 97/158 (61.39%), Query Frame = 2
Query:    2 LFVLLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSDGMNGYISPCAGDPHPPVFRSPVASMEDIMGNQVLCAIYKLPD--AHKHVTRPPAGVIFPKKIVQLEDLKPAPVLWHEDSGRRPH-----ENGRHNPHGTISGRQLGEAAHRLVANSL 454
            LFV+ SHPL   I +L+     L  +ER  + E+++P LSDGMNGYI+ C GD  P  F S V  MED++ NQV+CAIYKLP+      +T     +  PKK + L DLK   +LWHED  +R       +  R+NP G+ISG +LG+A+HRLV  ++
Sbjct:  699 LFVVASHPLGELIRSLNSRTNNLSNEERATIIEKIDPGLSDGMNGYIASCGGDSQPSCFCSTVEGMEDVLTNQVICAIYKLPEDIRGSEITHQIPRLAIPKKTISLVDLKSGGLLWHEDGDKRRAPPKVIKIKRYNPEGSISGGRLGKASHRLVLQTI 856          
BLAST of CV712704 vs. ExPASy Swiss-Prot
Match: XRN4_ARATH (5'-3' exoribonuclease 4 OS=Arabidopsis thaliana GN=XRN4 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.959e-19
Identity = 80/259 (30.89%), Postives = 108/259 (41.70%), Query Frame = 2
Query:    2 LFVLLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSDGMNGYISPCAGDPHPPVFRSPVASMEDIMGNQVLCAIYKLPDAHKHVTRPPAGVIFPKKIVQLEDLKPAPVLWHED-SGRRPHENGRHNPHGTISGRQLGEAAHRLVANSLQHMK---------VDRNGYGDRMHGXXXXXXXXXXXXXXXXXQEYGVYDQGYNRFSQPRTDSYPAGHSQSSI-------SAAQPPYDGGYSQHYASNTSHHPNRRYH 727
            L+V  +HPL   I       + +   E +     ++P  S GMNG++     +       SPV  +  I  N+ L   Y  P  H H++ PP G I P KI+   D+KP P LWHED S RR     R    G I+G  LGEAAHRL+ N+L +MK         +D NGY   + G                   YG    G NR   P    Y   +   S        ++ Q  ++ G    Y SN S   NR Y+
Sbjct:  613 LYVHPAHPLGQRILQYYHFYQHMPPHECLPWM--IDPNSSQGMNGFLWFSERNGFQTRVDSPVNGLPCIEQNRALNVTYLCPAKHSHISEPPRGAIIPDKILTSVDIKPFPPLWHEDNSNRRRQARDRPQVVGAIAGPSLGEAAHRLIKNTL-NMKSSTGAASGLIDPNGYYRNVPG----------------NYSYG----GVNRPRAPGPSPYRKAYDDDSSYYYGKYNNSTQGTFNNGPRYPYPSNGSQDYNRNYN 848          
BLAST of CV712704 vs. ExPASy Swiss-Prot
Match: CR2_HORVU (Cold-regulated protein 2 (Fragment) OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.658e-18
Identity = 44/75 (58.67%), Postives = 54/75 (72.00%), Query Frame = 2
Query:   17 SHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSDGMNGYISPCAGDPHPPVFRSPVASMEDIMGNQVLCAIYK 241
            +HP+S  IY+L      L  K+R E+KE+L+P  S GMNGYIS C GDP P VFRSPV  +EDIM NQV+C+IYK
Sbjct:    2 AHPISPYIYSLSSKFGHLADKDRNEIKEQLDPSASGGMNGYISLCGGDPSPLVFRSPVDGLEDIMDNQVICSIYK 76          
The following BLAST results are available for this feature:
BLAST of CV712704 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
XRN3_ARATH4.463e-5658.725'-3' exoribonuclease 3 OS=Arabidopsis thaliana GN... [more]
XRN2_ARATH2.231e-3144.945'-3' exoribonuclease 2 OS=Arabidopsis thaliana GN... [more]
XRN4_ARATH1.959e-1930.895'-3' exoribonuclease 4 OS=Arabidopsis thaliana GN... [more]
CR2_HORVU1.658e-1858.67Cold-regulated protein 2 (Fragment) OS=Hordeum vul... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_0001M14_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001M14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712704 ID=CV712704; Name=CV712704; organism=Citrus sinensis; type=EST; length=762bp
GCTTTTTGTTCTCCTGTCTCATCCGCTCTCTGCAAGCATATATACACTTG
ATGAACATTGTAAACAGTTGAAAATCAAAGAGCGAGTTGAAGTTAAGGAG
CGTCTCAATCCCGAGTTAAGCGATGGGATGAACGGTTACATATCCCCTTG
TGCTGGCGATCCTCATCCCCCTGTATTTAGATCTCCTGTCGCAAGCATGG
AAGATATCATGGGCAACCAAGTCTTATGTGCTATATACAAACTTCCAGAT
GCACATAAGCACGTTACCAGGCCTCCTGCCGGAGTTATATTTCCAAAAAA
GATAGTGCAATTGGAGGATCTGAAACCTGCACCTGTATTGTGGCATGAAG
ATTCTGGAAGGAGGCCTCATGAAAATGGAAGACATAATCCCCATGGAACT
ATTTCTGGCCGTCAGCTCGGGGAGGCAGCACACAGACTAGTTGCTAATAG
TTTACAGCACATGAAAGTGGATCGTAATGGGTATGGTGATCGTATGCATG
GTTCACCGCTACCTTATGCTGCGGCCCCGTATGTCCCTCCAGTTCCTTCC
TATCAAGAATATGGGGTTTATGATCAAGGATATAATAGATTCTCGCAGCC
AAGAACAGATAGCTATCCTGCAGGGCATTCCCAATCGTCTATTTCTGCTG
CACAACCTCCCTATGATGGTGGGTATAGTCAACACTATGCTTCAAATACT
TCTCACCATCCTAACAGAAGATATCATCCTCAGTATGATAGAAATTCCAG
TGGAGAGCATCC
back to top