CV712662

Overview
NameCV712662
Unique NameCV712662
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV712662_ssr590 microsatellite CV712662_ssr590:590..610. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CV712662 vs. ExPASy Swiss-Prot
Match: CCD12_MOUSE (Coiled-coil domain-containing protein 12 OS=Mus musculus GN=Ccdc12 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 9.586e-13
Identity = 38/89 (42.70%), Postives = 59/89 (66.29%), Query Frame = -1 
Query:  302 MKFRNYVPHDKQLQEGKVTPPELP-----KFEDPVAAAPPQSEKKEDPFVNIAPKKPNWDLRRDVQKKLDKLESRTQKAMFTLMQQQEK 553
            ++ RNYVP D+ L+  +V P   P     K ++ + AA P+   +E    N+AP+KP+WDL+RDV KKL+KLE RTQ+A+  L++++ K
Sbjct:   57 LRLRNYVPEDEDLKRRRV-PQAKPVAVEEKVKEQLEAAKPEPVIEEVDLANLAPRKPDWDLKRDVAKKLEKLEKRTQRAIAELIRERLK 144
[Close]
BLAST of CV712662 vs. ExPASy Swiss-Prot
Match: CCD12_HUMAN (Coiled-coil domain-containing protein 12 OS=Homo sapiens GN=CCDC12 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.135e-12
Identity = 37/89 (41.57%), Postives = 60/89 (67.42%), Query Frame = -1 
Query:  302 MKFRNYVPHDKQLQEGKVTPPELP-----KFEDPVAAAPPQSEKKEDPFVNIAPKKPNWDLRRDVQKKLDKLESRTQKAMFTLMQQQEK 553
            ++ RNYVP D+ L++ +V P   P     K ++ + AA P+   +E    N+AP+KP+WDL+RDV KKL+KL+ RTQ+A+  L++++ K
Sbjct:   57 LRLRNYVPEDEDLKKRRV-PQAKPVAVEEKVKEQLEAAKPEPVIEEVDLANLAPRKPDWDLKRDVAKKLEKLKKRTQRAIAELIRERLK 144
The following BLAST results are available for this feature:
BLAST of CV712662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CCD12_MOUSE9.586e-1342.70Coiled-coil domain-containing protein 12 OS=Mus mu... [more]
CCD12_HUMAN2.135e-1241.57Coiled-coil domain-containing protein 12 OS=Homo s... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_0001L14_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001L14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712662 ID=CV712662; Name=CV712662; organism=Citrus sinensis; type=EST; length=727bp
CCATAATCTACTTTCCTCATTTAAACATAAAAGCATTTTTGAAGCTTAGA
ACATAATCTCCTGTAACAGAAATCAGGCATGTTAAGAAGTCTGGTATCAA
CTGATTCATAACTGAACGATATAAACCGATTTTTTGGCAAAAATGCAGAG
TTTTTCTTTCTGATTGGCCAAATATCTACGGTTTTCAATCATCTCTTGAC
AATCAGAAGTCTTCCTTCAACAGAATCTTTGCTCACTTGAGCATGGTCTA
ATTCTAATCTTCCATTCTACTTCCTTCTTCATTTTCAGCCGTCAGCTTTT
CCTTTTCTTGTTGCTGCATAAGTGTAAACATTGCCTTTTGCGTGCGGCTT
TCAAGCTTATCAAGCTTCTTTTGCACATCCCTTCGCAGGTCCCAGTTGGG
TTTCTTCGGAGCAATGTTCACAAATGGATCCTCTTTCTTTTCTGATTGTG
GAGGTGCAGCTGCAACTGGGTCCTCGAACTTTGGTAGTTCTGGCGGAGTG
ACCTTACCTTCCTGAAGCTGCTTATCATGAGGAACATAATTTCTAAATTT
CATGCTGAGATTAATATCTTCAGCATCTTCGTTATCATTATCATCATCAT
CATCATCATCAGTGGCCTTATTATTATCATCAGCCTGACCGGAGTCATCG
TCCCCGGCGCTTAGCAGTTCCTGAGCAGCTCTCAAAGCCTTGAGCCTCTC
TCGCCGCGCCGCAGCCGCTTGCTCGAC
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