CV712660

Overview
NameCV712660
Unique NameCV712660
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length744
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7410 contig Csv1_Contig7410:232..975. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712660 vs. ExPASy Swiss-Prot
Match: AL2B4_ARATH (Aldehyde dehydrogenase family 2 member B4, mitochondrial OS=Arabidopsis thaliana GN=ALDH2B4 PE=1 SV=1)

HSP 1 Score: 325.479 bits (833), Expect = 1.899e-88
Identity = 157/233 (67.38%), Postives = 184/233 (78.97%), Query Frame = 3
Query:   48 ISTLLSRSFPSAXXXXXXXXXXXXXXARGISRFSTAAVVEEPII-PPVQISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGNYHIQTLHEPIGVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTA 743
            +S+LLSRSF ++                 + RF T++   E II P VQ+S+T+ LING FVD+ASGKTFP  DPRT EVIA+VAEGDAEDI+RAV  AR AFDEGPWPKM+ YERSR++LR ADL+EK+ EELA+LETW+NGKPY QSL +E+PM  RL  YYAGWADKIHGLT+P DGNY + TLHEPIGVAGQI+PWNFPLL+F WKV PAL CGNTIVLK+AEQTPLTA
Sbjct:    6 VSSLLSRSFSASSPLLFRSQGRNCYNGGILRRFGTSSAAAEEIINPSVQVSHTQLLINGNFVDSASGKTFPTLDPRTGEVIAHVAEGDAEDINRAVKAARTAFDEGPWPKMSAYERSRVLLRFADLVEKHSEELASLETWDNGKPYQQSLTAEIPMFARLFRYYAGWADKIHGLTIPADGNYQVHTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTIVLKTAEQTPLTA 238          
BLAST of CV712660 vs. ExPASy Swiss-Prot
Match: AL2B7_ARATH (Aldehyde dehydrogenase family 2 member B7, mitochondrial OS=Arabidopsis thaliana GN=ALDH2B7 PE=2 SV=2)

HSP 1 Score: 318.161 bits (814), Expect = 3.032e-86
Identity = 153/233 (65.67%), Postives = 185/233 (79.40%), Query Frame = 3
Query:   48 ISTLLSRSFPSAXXXXXXXXXXXXXXARGISRFST-AAVVEEPIIPPVQISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGNYHIQTLHEPIGVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTA 743
            +S+LLSRSF S+               RG  R+S  AA VE  I PPV++ +T+ LI G+FVDA SGKTFP  DPR  EVIA V+EGDAED++RAVA ARKAFDEGPWPKMT YERS+I+ R ADLIEK+ +E+AALETW+NGKPY QS + EVPM+ R+  YYAGWADKIHG+T+PGDG +H+QTLHEPIGVAGQI+PWNFPLL+ +WK+ PAL CGNT+VLK+AEQTPL+A
Sbjct:    6 VSSLLSRSFMSSSRSIFSLRGMN----RGAQRYSNLAAAVENTITPPVKVEHTQLLIGGRFVDAVSGKTFPTLDPRNGEVIAQVSEGDAEDVNRAVAAARKAFDEGPWPKMTAYERSKILFRFADLIEKHNDEIAALETWDNGKPYEQSAQIEVPMLARVFRYYAGWADKIHGMTMPGDGPHHVQTLHEPIGVAGQIIPWNFPLLMLSWKLGPALACGNTVVLKTAEQTPLSA 234          
BLAST of CV712660 vs. ExPASy Swiss-Prot
Match: AL1A2_RAT (Retinal dehydrogenase 2 OS=Rattus norvegicus GN=Aldh1a2 PE=1 SV=2)

HSP 1 Score: 217.238 bits (552), Expect = 7.284e-56
Identity = 101/189 (53.44%), Postives = 136/189 (71.96%), Query Frame = 3
Query:  180 PPVQISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGP-WPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGNYHIQTLHEPIGVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTA 743
            P ++I YTK  IN ++ ++ SG+ FPV +P T E +  V E D  DID+AV  AR AF  G  W +M   ER R++ + ADL+E++   LA +E+ N GKP++Q+   ++  V++ L YYAGWADKIHG+T+P DG+Y   T HEPIGV GQI+PWNFPLL+FTWK+APAL CGNT+V+K AEQTPL+A
Sbjct:   31 PNLEIKYTKIFINNEWQNSESGRVFPVCNPATGEQVCEVQEADKVDIDKAVQAARLAFSLGSVWRRMDASERGRLLDKLADLVERDRATLATMESLNGGKPFLQAFYIDLQGVIKTLRYYAGWADKIHGMTIPVDGDYFTFTRHEPIGVCGQIIPWNFPLLMFTWKIAPALCCGNTVVIKPAEQTPLSA 219          
BLAST of CV712660 vs. ExPASy Swiss-Prot
Match: AL1A2_MOUSE (Retinal dehydrogenase 2 OS=Mus musculus GN=Aldh1a2 PE=1 SV=2)

HSP 1 Score: 217.238 bits (552), Expect = 7.284e-56
Identity = 101/189 (53.44%), Postives = 136/189 (71.96%), Query Frame = 3
Query:  180 PPVQISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGP-WPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGNYHIQTLHEPIGVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTA 743
            P ++I YTK  IN ++ ++ SG+ FPV +P T E +  V E D  DID+AV  AR AF  G  W +M   ER R++ + ADL+E++   LA +E+ N GKP++Q+   ++  V++ L YYAGWADKIHG+T+P DG+Y   T HEPIGV GQI+PWNFPLL+FTWK+APAL CGNT+V+K AEQTPL+A
Sbjct:   31 PNLEIKYTKIFINNEWQNSESGRVFPVCNPATGEQVCEVQEADKVDIDKAVQAARLAFSLGSVWRRMDASERGRLLDKLADLVERDRATLATMESLNGGKPFLQAFYIDLQGVIKTLRYYAGWADKIHGMTIPVDGDYFTFTRHEPIGVCGQIIPWNFPLLMFTWKIAPALCCGNTVVIKPAEQTPLSA 219          
BLAST of CV712660 vs. ExPASy Swiss-Prot
Match: AL1A2_HUMAN (Retinal dehydrogenase 2 OS=Homo sapiens GN=ALDH1A2 PE=1 SV=3)

HSP 1 Score: 217.238 bits (552), Expect = 7.284e-56
Identity = 100/189 (52.91%), Postives = 135/189 (71.43%), Query Frame = 3
Query:  180 PPVQISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGP-WPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGNYHIQTLHEPIGVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTA 743
            P ++I YTK  IN ++ ++ SG+ FPVY+P T E +  V E D  DID+AV  AR AF  G  W +M   ER R++ + ADL+E++   LA +E+ N GKP++Q+   ++  V++   YYAGWADKIHG+T+P DG+Y   T HEPIGV GQI+PWNFPLL+F WK+APAL CGNT+V+K AEQTPL+A
Sbjct:   31 PNLEIKYTKIFINNEWQNSESGRVFPVYNPATGEQVCEVQEADKADIDKAVQAARLAFSLGSVWRRMDASERGRLLDKLADLVERDRAVLATMESLNGGKPFLQAFYVDLQGVIKTFRYYAGWADKIHGMTIPVDGDYFTFTRHEPIGVCGQIIPWNFPLLMFAWKIAPALCCGNTVVIKPAEQTPLSA 219          
BLAST of CV712660 vs. ExPASy Swiss-Prot
Match: ALDH2_BOVIN (Aldehyde dehydrogenase, mitochondrial OS=Bos taurus GN=ALDH2 PE=1 SV=2)

HSP 1 Score: 215.312 bits (547), Expect = 2.768e-55
Identity = 104/186 (55.91%), Postives = 132/186 (70.97%), Query Frame = 3
Query:  189 QISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGNYHIQTLHEPIGVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTA 743
            ++ Y +  IN ++ DA S KTFP  +P T +VI +VAEGD  D+DRAV  AR AF  G PW +M   ER R++ R ADLIE++   LAALET +NGKPY+ S   ++ MV++ L YYAGWADK HG T+P DG+Y   T HEP+GV GQI+PWNFPLL+  WK+ PAL  GN +V+K AEQTPLTA
Sbjct:   36 EVLYNQIFINNEWHDAVSKKTFPTVNPSTGDVICHVAEGDKADVDRAVKAARAAFQLGSPWRRMDASERGRLLNRLADLIERDRTYLAALETLDNGKPYIISYLVDLDMVLKCLRYYAGWADKYHGKTIPIDGDYFSYTRHEPVGVCGQIIPWNFPLLMQAWKLGPALATGNVVVMKVAEQTPLTA 221          
BLAST of CV712660 vs. ExPASy Swiss-Prot
Match: AL1B1_PONAB (Aldehyde dehydrogenase X, mitochondrial OS=Pongo abelii GN=ALDH1B1 PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 6.167e-55
Identity = 106/203 (52.22%), Postives = 143/203 (70.44%), Query Frame = 3
Query:  138 SRFSTAAVVEEPIIPPVQISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGNYHIQTLHEPIGVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTA 743
            +R+S+AA +  PI+ P  I Y +  IN ++ DA S KTFP  +P T EVI +VAEGD  D+DRAV  AR+AF  G PW +M   ER R++   ADL+E++   LA+LET +NGKP+ +S   ++  V+++  Y+AGWADK HG T+P DG +   T HEPIGV GQI+PWNFPL++  WK+APAL  GNT+V+K AEQTPL+A
Sbjct:   17 ARYSSAAALPSPILNP-DIPYNQLFINNEWQDAVSKKTFPTVNPTTGEVIGHVAEGDRADVDRAVKAAREAFRLGSPWRRMDASERGRLLNCLADLVERDRVYLASLETLDNGKPFQESYALDLDEVIKVYRYFAGWADKWHGKTIPMDGQHFCFTRHEPIGVCGQIIPWNFPLVMQGWKLAPALATGNTVVMKVAEQTPLSA 218          
BLAST of CV712660 vs. ExPASy Swiss-Prot
Match: AL1B1_HUMAN (Aldehyde dehydrogenase X, mitochondrial OS=Homo sapiens GN=ALDH1B1 PE=1 SV=2)

HSP 1 Score: 214.157 bits (544), Expect = 6.167e-55
Identity = 105/203 (51.72%), Postives = 143/203 (70.44%), Query Frame = 3
Query:  138 SRFSTAAVVEEPIIPPVQISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGNYHIQTLHEPIGVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTA 743
            +R+S+AA +  PI+ P  I Y +  IN ++ DA S KTFP  +P T EVI +VAEGD  D+DRAV  AR+AF  G PW +M   ER R++   ADL+E++   LA+LET +NGKP+ +S   ++  V+++  Y+AGWADK HG T+P DG +   T HEP+GV GQI+PWNFPL++  WK+APAL  GNT+V+K AEQTPL+A
Sbjct:   17 ARYSSAAALPSPILNP-DIPYNQLFINNEWQDAVSKKTFPTVNPTTGEVIGHVAEGDRADVDRAVKAAREAFRLGSPWRRMDASERGRLLNLLADLVERDRVYLASLETLDNGKPFQESYALDLDEVIKVYRYFAGWADKWHGKTIPMDGQHFCFTRHEPVGVCGQIIPWNFPLVMQGWKLAPALATGNTVVMKVAEQTPLSA 218          
BLAST of CV712660 vs. ExPASy Swiss-Prot
Match: ALDH2_PIG (Aldehyde dehydrogenase, mitochondrial OS=Sus scrofa GN=ALDH2 PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 8.054e-55
Identity = 104/186 (55.91%), Postives = 133/186 (71.51%), Query Frame = 3
Query:  189 QISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGNYHIQTLHEPIGVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTA 743
            +I Y +  IN ++ DA S KTFP  +P T +VI +VAEGD ED+DRAV  AR AF  G PW ++   +R R++ R ADLIE++   LAALET +NGKPYV S   ++ MV++ L YYAGWADK HG T+P DG+Y   T HEP+GV GQI+PWNFPLL+  WK+ PAL  GN +V+K +EQTPLTA
Sbjct:   37 EIFYNQIFINNEWHDAISKKTFPTVNPSTGDVICHVAEGDKEDVDRAVEAARAAFQLGSPWRRLDASDRGRLLNRLADLIERDRTYLAALETLDNGKPYVISYLVDLDMVLKCLRYYAGWADKYHGKTLPIDGDYFSYTRHEPVGVCGQIIPWNFPLLMQAWKLGPALATGNVVVMKVSEQTPLTA 222          
BLAST of CV712660 vs. ExPASy Swiss-Prot
Match: AL1B1_MOUSE (Aldehyde dehydrogenase X, mitochondrial OS=Mus musculus GN=Aldh1b1 PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.052e-54
Identity = 106/201 (52.74%), Postives = 141/201 (70.15%), Query Frame = 3
Query:  144 FSTAAVVEEPIIPPVQISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGNYHIQTLHEPIGVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTA 743
            +STAA +  PI P  +I Y K  IN ++ DA S KTFP  +P T EVI +VAEGD  D+D AV  AR+AF  G PW +M   ER R++ R ADL+E++   LA+LET +NGKP+ +S   ++  V+++  Y+AGWADK HG T+P DG +   T HEP+GV GQI+PWNFPL++  WK+APAL  GNT+V+K AEQTPL+A
Sbjct:   21 YSTAAALPNPI-PNPEICYNKLFINNEWHDAVSKKTFPTVNPTTGEVIGHVAEGDRADVDLAVKAAREAFRLGSPWRRMDASERGRLLNRLADLVERDRVYLASLETLDNGKPFQESYVLDLDEVIKVYRYFAGWADKWHGKTIPMDGEHFCFTRHEPVGVCGQIIPWNFPLVMQGWKLAPALATGNTVVMKVAEQTPLSA 220          
The following BLAST results are available for this feature:
BLAST of CV712660 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 496
Match NameE-valueIdentityDescription
AL2B4_ARATH1.899e-8867.38Aldehyde dehydrogenase family 2 member B4, mitocho... [more]
AL2B7_ARATH3.032e-8665.67Aldehyde dehydrogenase family 2 member B7, mitocho... [more]
AL1A2_RAT7.284e-5653.44Retinal dehydrogenase 2 OS=Rattus norvegicus GN=Al... [more]
AL1A2_MOUSE7.284e-5653.44Retinal dehydrogenase 2 OS=Mus musculus GN=Aldh1a2... [more]
AL1A2_HUMAN7.284e-5652.91Retinal dehydrogenase 2 OS=Homo sapiens GN=ALDH1A2... [more]
ALDH2_BOVIN2.768e-5555.91Aldehyde dehydrogenase, mitochondrial OS=Bos tauru... [more]
AL1B1_PONAB6.167e-5552.22Aldehyde dehydrogenase X, mitochondrial OS=Pongo a... [more]
AL1B1_HUMAN6.167e-5551.72Aldehyde dehydrogenase X, mitochondrial OS=Homo sa... [more]
ALDH2_PIG8.054e-5555.91Aldehyde dehydrogenase, mitochondrial OS=Sus scrof... [more]
AL1B1_MOUSE1.052e-5452.74Aldehyde dehydrogenase X, mitochondrial OS=Mus mus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001L13_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001L13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712660 ID=CV712660; Name=CV712660; organism=Citrus sinensis; type=EST; length=744bp
GTTGAATAGGTCGCTTCTTCGCTTTGGCTATGGCAGCTGCTCGCAGAATC
TCCACCTTGCTGTCTCGTTCTTTCCCTTCTGCTTCTCCTTCTCTGCTTCG
CTCTCTTGGTAGGGAGTCTAGCAGGGCAAGAGGCATCAGCAGGTTTAGCA
CAGCTGCTGTTGTTGAAGAGCCAATCATTCCACCTGTTCAAATTAGTTAC
ACTAAGAATTTAATAAATGGCCAATTTGTAGACGCAGCATCAGGCAAAAC
ATTTCCGGTCTACGACCCTCGTACTGCTGAAGTGATTGCTAATGTTGCTG
AAGGAGATGCGGAAGATATTGACCGTGCAGTTGCTACTGCTCGCAAGGCA
TTTGATGAGGGACCTTGGCCAAAGATGACCCCTTATGAGAGGTCAAGGAT
TATGTTGCGGGCTGCTGACTTGATTGAGAAAAACATGGAGGAGCTGGCAG
CTTTGGAGACATGGAACAATGGAAAGCCCTATGTACAATCTCTCAAATCT
GAAGTACCAATGGTGGTTCGCCTGTTGCACTATTATGCTGGATGGGCTGA
TAAAATCCACGGACTAACTGTCCCTGGTGATGGAAATTACCATATTCAAA
CTTTACATGAACCAATTGGCGTTGCTGGCCAGATAGTTCCCTGGAACTTT
CCTCTTCTCTTGTTTACTTGGAAAGTAGCGCCTGCACTAACTTGTGGCAA
TACTATTGTTCTAAAGTCTGCTGAGCAAACGCCTTTGACTGCTC
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