CV712656

Overview
NameCV712656
Unique NameCV712656
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length754
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV712656_ssr683 microsatellite CV712656_ssr683:683..694. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12382 contig Csv1_Contig12382:1..712. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712656 vs. ExPASy Swiss-Prot
Match: EF1G3_ORYSJ (Elongation factor 1-gamma 3 OS=Oryza sativa subsp. japonica GN=Os06g0571400 PE=2 SV=1)

HSP 1 Score: 350.517 bits (898), Expect = 5.679e-96
Identity = 166/216 (76.85%), Postives = 188/216 (87.04%), Query Frame = 1
Query:  103 MALVLHVGQENKNGFKGLIAAEYAGVEVKLAENFEMGVTNKSPEFLKMNPLGKVPVLETPDGPVFESNAIARYVARLKADNQLCGSSLIDYAHVEQWMDFSAMEIDANISRWLYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKHIMTKTFTSEFPHVERYFWTVANQPKIKKFLGDFKQAESVPAVQ 750
            MALVLH G  NKN FK LIAAEY GV+V+L +NFEMGV+NK+PEFLKMNPLGK+PVLETP+G VFESNAIARYVARLK ++ LCGSSLIDY+H+EQWMDFSA E+DANI RWLYPRLG+  Y+P+ EE A+ +LKR+L ALN HLASNTYLVGHSVTLADIVM CNLYYGF  I+ K+FTSEFPHVERYFWT+ NQP  KK +GDFKQAESVP VQ
Sbjct:    1 MALVLHCGSGNKNAFKALIAAEYTGVKVELTKNFEMGVSNKTPEFLKMNPLGKIPVLETPEGAVFESNAIARYVARLKDNSSLCGSSLIDYSHIEQWMDFSATEVDANIGRWLYPRLGFGPYVPVLEEFAITSLKRSLGALNTHLASNTYLVGHSVTLADIVMTCNLYYGFVRILIKSFTSEFPHVERYFWTMVNQPNFKKVIGDFKQAESVPPVQ 216          
BLAST of CV712656 vs. ExPASy Swiss-Prot
Match: EF1G2_ORYSJ (Elongation factor 1-gamma 2 OS=Oryza sativa subsp. japonica GN=Os02g0220500 PE=2 SV=2)

HSP 1 Score: 347.051 bits (889), Expect = 6.279e-95
Identity = 166/216 (76.85%), Postives = 186/216 (86.11%), Query Frame = 1
Query:  103 MALVLHVGQENKNGFKGLIAAEYAGVEVKLAENFEMGVTNKSPEFLKMNPLGKVPVLETPDGPVFESNAIARYVARLKADNQLCGSSLIDYAHVEQWMDFSAMEIDANISRWLYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKHIMTKTFTSEFPHVERYFWTVANQPKIKKFLGDFKQAESVPAVQ 750
            MALVLH G  NKN FK LIAAEY+GV+V+L +NF+MGV+NK+PEFLKMNP+GK+PVLETPDGPVFESNAIARYV R KADN L GSSLI+YAH+EQW DFSA E+DANI +WLYPRLG   Y+ ++EE A+AALKR+L ALN HLASNTYLVGHSVTLADIVM CNLY GF  IMTK+FTSEFPHVERYFWT+ NQP  KK LGD KQAESVP VQ
Sbjct:    1 MALVLHAGSGNKNAFKALIAAEYSGVKVELVKNFQMGVSNKTPEFLKMNPIGKIPVLETPDGPVFESNAIARYVTRSKADNPLYGSSLIEYAHIEQWNDFSATEVDANIGKWLYPRLGIAPYVAVSEEAAIAALKRSLGALNTHLASNTYLVGHSVTLADIVMTCNLYMGFARIMTKSFTSEFPHVERYFWTMVNQPNFKKVLGDVKQAESVPPVQ 216          
BLAST of CV712656 vs. ExPASy Swiss-Prot
Match: EF1G1_ORYSJ (Elongation factor 1-gamma 1 OS=Oryza sativa subsp. japonica GN=Os02g0220600 PE=2 SV=1)

HSP 1 Score: 339.732 bits (870), Expect = 1.002e-92
Identity = 160/216 (74.07%), Postives = 186/216 (86.11%), Query Frame = 1
Query:  103 MALVLHVGQENKNGFKGLIAAEYAGVEVKLAENFEMGVTNKSPEFLKMNPLGKVPVLETPDGPVFESNAIARYVARLKADNQLCGSSLIDYAHVEQWMDFSAMEIDANISRWLYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKHIMTKTFTSEFPHVERYFWTVANQPKIKKFLGDFKQAESVPAVQ 750
            MALVLH    NKN FK LIAAEY+GV+V+LA+NF+MGV+NK+PE+LKMNP+GKVP+LETPDGPVFESNAIARYV R K+DN L GSSLI+YAH+EQW+DFSA E+DAN  +WL+PRLG+  Y+ ++EE A+AALKR+L ALN HLASNTYLVGHSVTLADIVM CNLY GF  IMTK FTSEFPHVERYFWT+ NQP  KK +GD KQA+SVP VQ
Sbjct:    1 MALVLHTFDGNKNAFKALIAAEYSGVKVELAKNFQMGVSNKTPEYLKMNPIGKVPILETPDGPVFESNAIARYVTRSKSDNPLYGSSLIEYAHIEQWIDFSATEVDANTGKWLFPRLGFAPYVAVSEEAAIAALKRSLGALNTHLASNTYLVGHSVTLADIVMTCNLYMGFARIMTKNFTSEFPHVERYFWTMVNQPNFKKVMGDVKQADSVPQVQ 216          
BLAST of CV712656 vs. ExPASy Swiss-Prot
Match: EF1G_PRUAV (Elongation factor 1-gamma OS=Prunus avium PE=2 SV=1)

HSP 1 Score: 337.421 bits (864), Expect = 4.975e-92
Identity = 160/217 (73.73%), Postives = 184/217 (84.79%), Query Frame = 1
Query:  103 MALVLHVGQENKNGFKGLIAAEYAGVEVKLAENFEMGVTNKSPEFLKMNPLGKVPVLETPDGPVFESNAIARYVARLKADNQLCGSSLIDYAHVEQWMDFSAMEIDANISRWLYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKHIMTKTFTSEFPHVERYFWTVANQPKIKKFLGDFKQAESVPAVQS 753
            MALVLH G+ NKN FK LI AEY GV+V+LA +FEMGVTNK+PE+LK+NP+GKVP+LETPDGP+FESNAIARYVARLKADN L GSSLIDYAH+EQW+DF ++EIDANI  W  PR GY  Y+P AEE A++ALKRAL ALN HLASNTYLVGH VTLADI++ CNL++GF  +M K+FTSEFPHVERYFWT+ NQPK KK LGD KQ ESVP V S
Sbjct:    1 MALVLHAGKTNKNAFKTLIVAEYTGVKVELAPDFEMGVTNKTPEYLKLNPIGKVPLLETPDGPIFESNAIARYVARLKADNPLIGSSLIDYAHIEQWIDFGSLEIDANIISWFRPRFGYAVYLPPAEEAAISALKRALGALNTHLASNTYLVGHFVTLADIIVTCNLFFGFTKLMIKSFTSEFPHVERYFWTLVNQPKFKKVLGDVKQTESVPPVPS 217          
BLAST of CV712656 vs. ExPASy Swiss-Prot
Match: EF1G2_ARATH (Probable elongation factor 1-gamma 2 OS=Arabidopsis thaliana GN=At1g57720 PE=2 SV=1)

HSP 1 Score: 309.686 bits (792), Expect = 1.111e-83
Identity = 148/215 (68.84%), Postives = 177/215 (82.33%), Query Frame = 1
Query:  103 MALVLHVGQENKNGFKGLIAAEYAGVEVKLAENFEMGVTNKSPEFLKMNPLGKVPVLETPDGPVFESNAIARYVARLKADNQLCGSSLIDYAHVEQWMDFSAMEIDANISRWLYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKHIMTKTFTSEFPHVERYFWTVANQPKIKKFLGDFKQAESVPAV 747
            MALV+H  + NK   K LIAAEYAGV+++ + +F+MGVTNKSPEFLKMNP+GKVPVLETP+GP+FESNAIARYV+R   DN L GSSLI+YAH+EQW+DFS++EIDAN+ +W  PR+GY  +   AEE A++ALKR L+ALN HLASNT+LVGHSVTLADIV ICNL  GF  +MTK FTS FPHVERYFWT+ NQP+ KK LGD KQ E+VP V
Sbjct:    1 MALVMHTYKGNKGANKALIAAEYAGVKIEESADFQMGVTNKSPEFLKMNPIGKVPVLETPEGPIFESNAIARYVSRKNGDNSLNGSSLIEYAHIEQWIDFSSLEIDANMLKWFAPRMGYAPFSAPAEEAAISALKRGLEALNTHLASNTFLVGHSVTLADIVTICNLNLGFATVMTKKFTSAFPHVERYFWTMVNQPEFKKVLGDAKQTEAVPPV 215          
BLAST of CV712656 vs. ExPASy Swiss-Prot
Match: EF1G1_ARATH (Probable elongation factor 1-gamma 1 OS=Arabidopsis thaliana GN=At1g09640 PE=2 SV=1)

HSP 1 Score: 306.605 bits (784), Expect = 9.404e-83
Identity = 147/217 (67.74%), Postives = 174/217 (80.18%), Query Frame = 1
Query:  103 MALVLHVGQENKNGFKGLIAAEYAGVEVKLAENFEMGVTNKSPEFLKMNPLGKVPVLETPDGPVFESNAIARYVARLKADNQLCGSSLIDYAHVEQWMDFSAMEIDANISRWLYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKHIMTKTFTSEFPHVERYFWTVANQPKIKKFLGDFKQAESVPAVQS 753
            MALVLH  + NK+  K LIAAEY GV++ +  +F+MGVTNK+P FLKMNP+GKVPVLETP+G VFESNAIARYV+RL  DN L GSSLI+YA +EQW+DFS++EI A+I RW  PR+G+M Y   AEEGA++ LKRALDALN HL SNTYLVGHS+TLADI+ +CNL  GF  +MTK FTSEFPHVERYFWTV NQP   K LGD KQ E+VP + S
Sbjct:    1 MALVLHTYKGNKSAEKALIAAEYVGVQIDVPSDFQMGVTNKTPAFLKMNPIGKVPVLETPEGSVFESNAIARYVSRLNGDNSLNGSSLIEYAQIEQWIDFSSLEIYASILRWFGPRMGFMPYSAPAEEGAISTLKRALDALNTHLTSNTYLVGHSITLADIITVCNLNLGFATVMTKKFTSEFPHVERYFWTVVNQPNFTKVLGDVKQTEAVPPIAS 217          
BLAST of CV712656 vs. ExPASy Swiss-Prot
Match: EF1G_ARTSA (Elongation factor 1-gamma OS=Artemia salina PE=1 SV=3)

HSP 1 Score: 164.081 bits (414), Expect = 7.538e-40
Identity = 90/207 (43.48%), Postives = 128/207 (61.84%), Query Frame = 1
Query:  115 LHVGQENKNGFKGLIAAEYAGVEVKLAENFEMGVTNKSPEFLKMNPLGKVPVLETPDGP-VFESNAIARYVARLKADNQLCGSSLIDYAHVEQWMDFSAMEIDANISRWLYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKHIMTKTFTSEFPHVERYFWTVANQPKIKKFLGDFKQAE 732
            L+   EN   FK LIAA+Y+G ++++A++F  G TNKS  FLK  PLGKVP  E+ DG  + ESNAIA YVA    +  L GSS ++ A + QWM F+  EI      W++P LG MQ+   A   A   + +AL AL+ HL + TYLVG  +TLADIV+ C L + ++H++ + F   + +  R+F T+ NQ ++K  +GDFK  E
Sbjct:    6 LYTYPENFRAFKALIAAQYSGAKLEIAKSFVFGETNKSDAFLKSFPLGKVPAFESADGHCIAESNAIAYYVA----NETLRGSSDLEKAQIIQWMTFADTEILPASCTWVFPVLGIMQFNKQATARAKEDIDKALQALDDHLLTRTYLVGERITLADIVVTCTLLHLYQHVLDEAFRKSYVNTNRWFITLINQKQVKAVIGDFKLCE 208          
BLAST of CV712656 vs. ExPASy Swiss-Prot
Match: EF1GA_XENLA (Elongation factor 1-gamma-A OS=Xenopus laevis GN=eef1g-A PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.857e-38
Identity = 88/212 (41.51%), Postives = 128/212 (60.38%), Query Frame = 1
Query:  115 LHVGQENKNGFKGLIAAEYAGVEVKLAEN---FEMGVTNKSPEFLKMNPLGKVPVLETPDG-PVFESNAIARYVARLKADNQLCGSSLIDYAHVEQWMDFSAMEIDANISRWLYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKHIMTKTFTSEFPHVERYFWTVANQPKIKKFLGDFKQAESV 738
            L+   +N   +K LIAA+Y+G  +K+A +   F+ GVTNK+PEFLK  PLGKVP  E  DG  +FES+AIA YV     +++L G++ +  A V QW+ FS   I    S W++P LG MQY   A E A   +K  L  L+ HL + T+LVG  +TLADI + C+L + +K ++  +F   F +V R+F T  NQP+ +  LG+ K  + +
Sbjct:    6 LYTYPDNWRAYKPLIAAQYSGFPIKVASSAPEFQFGVTNKTPEFLKKFPLGKVPAFEGKDGFCLFESSAIAHYVG----NDELRGTTRLHQAQVIQWVSFSDSHIVPPASAWVFPTLGIMQYNKQATEQAKEGIKTVLGVLDSHLQTRTFLVGERITLADITVTCSLLWLYKQVLEPSFRQPFGNVTRWFVTCVNQPEFRAVLGEVKLCDKM 213          
BLAST of CV712656 vs. ExPASy Swiss-Prot
Match: EF1G_MOUSE (Elongation factor 1-gamma OS=Mus musculus GN=Eef1g PE=1 SV=3)

HSP 1 Score: 157.918 bits (398), Expect = 5.402e-38
Identity = 88/212 (41.51%), Postives = 125/212 (58.96%), Query Frame = 1
Query:  115 LHVGQENKNGFKGLIAAEYAGVEVKLAE---NFEMGVTNKSPEFLKMNPLGKVPVLETPDG-PVFESNAIARYVARLKADNQLCGSSLIDYAHVEQWMDFSAMEIDANISRWLYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKHIMTKTFTSEFPHVERYFWTVANQPKIKKFLGDFKQAESV 738
            L+   EN   FK LIAA+Y+G +V++     +F  G TN++PEFL+  P GKVP  E  DG  VFESNAIA YV+    + +L GS+    A V QW+ F+  +I    S W++P LG M +   A E A   +KR L  L+ HL + T+LVG  VTLADI ++C L + +K ++  +F   FP+  R+F T  NQP+ +  LG+ K  E +
Sbjct:    6 LYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNRTPEFLRKFPAGKVPAFEGDDGFCVFESNAIAYYVS----NEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGIMHHNKQATENAKEEVKRILGLLDTHLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSFRQAFPNTNRWFLTCINQPQFRAILGEVKLCEKM 213          
BLAST of CV712656 vs. ExPASy Swiss-Prot
Match: EF1G_RAT (Elongation factor 1-gamma OS=Rattus norvegicus GN=Eef1g PE=2 SV=3)

HSP 1 Score: 157.532 bits (397), Expect = 7.056e-38
Identity = 87/212 (41.04%), Postives = 125/212 (58.96%), Query Frame = 1
Query:  115 LHVGQENKNGFKGLIAAEYAGVEVKLAE---NFEMGVTNKSPEFLKMNPLGKVPVLETPDG-PVFESNAIARYVARLKADNQLCGSSLIDYAHVEQWMDFSAMEIDANISRWLYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKHIMTKTFTSEFPHVERYFWTVANQPKIKKFLGDFKQAESV 738
            L+   EN   FK LIAA+Y+G ++++     +F  G TN++PEFL+  P GKVP  E  DG  VFESNAIA YV+    + +L GS+    A V QW+ F+  +I    S W++P LG M +   A E A   +KR L  L+ HL + T+LVG  VTLADI ++C L + +K ++  +F   FP+  R+F T  NQP+ +  LG+ K  E +
Sbjct:    6 LYTYPENWRAFKALIAAQYSGAQIRVLSAPPHFHFGQTNRTPEFLRKFPAGKVPAFEGDDGFCVFESNAIAYYVS----NEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGIMHHNKQATENAKEEVKRILGLLDTHLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSFRQAFPNTNRWFLTCINQPQFRAILGEVKLCEKM 213          
The following BLAST results are available for this feature:
BLAST of CV712656 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
EF1G3_ORYSJ5.679e-9676.85Elongation factor 1-gamma 3 OS=Oryza sativa subsp.... [more]
EF1G2_ORYSJ6.279e-9576.85Elongation factor 1-gamma 2 OS=Oryza sativa subsp.... [more]
EF1G1_ORYSJ1.002e-9274.07Elongation factor 1-gamma 1 OS=Oryza sativa subsp.... [more]
EF1G_PRUAV4.975e-9273.73Elongation factor 1-gamma OS=Prunus avium PE=2 SV=... [more]
EF1G2_ARATH1.111e-8368.84Probable elongation factor 1-gamma 2 OS=Arabidopsi... [more]
EF1G1_ARATH9.404e-8367.74Probable elongation factor 1-gamma 1 OS=Arabidopsi... [more]
EF1G_ARTSA7.538e-4043.48Elongation factor 1-gamma OS=Artemia salina PE=1 S... [more]
EF1GA_XENLA1.857e-3841.51Elongation factor 1-gamma-A OS=Xenopus laevis GN=e... [more]
EF1G_MOUSE5.402e-3841.51Elongation factor 1-gamma OS=Mus musculus GN=Eef1g... [more]
EF1G_RAT7.056e-3841.04Elongation factor 1-gamma OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001L10_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001L10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712656 ID=CV712656; Name=CV712656; organism=Citrus sinensis; type=EST; length=754bp
CTTTTTGTCGCTCTCTTTTTTAAACTCCCAGTCGCTCTGTGGCCTTTCAG
GAGAACGCTCGCATTCATCTGTAATTTGAGCGAATCGTTTCTCCGTTAAG
CCATGGCTCTGGTCTTGCATGTTGGGCAGGAAAACAAAAATGGATTCAAA
GGACTCATTGCTGCTGAGTACGCTGGTGTGGAAGTCAAATTGGCTGAGAA
TTTTGAGATGGGTGTCACTAATAAATCCCCTGAATTTTTGAAGATGAACC
CTCTTGGGAAGGTTCCTGTGTTGGAGACACCTGATGGTCCGGTTTTTGAG
AGCAATGCCATTGCCCGTTATGTTGCACGTCTGAAAGCTGACAATCAACT
ATGTGGTTCTTCTCTGATCGATTATGCTCATGTTGAGCAGTGGATGGATT
TTTCTGCCATGGAGATTGATGCTAATATCTCCAGGTGGTTATATCCAAGA
CTTGGATATATGCAATACATTCCTCTGGCTGAGGAAGGTGCTGTTGCCGC
ACTGAAGAGAGCATTGGATGCTTTGAACATTCATTTGGCTTCAAATACGT
ACTTGGTTGGCCATTCTGTCACCCTGGCTGACATTGTCATGATATGCAAT
TTATATTATGGATTTAAGCACATCATGACGAAGACTTTCACCTCTGAGTT
TCCCCATGTTGAGAGATACTTTTGGACCGTGGCCAACCAACCAAAAATTA
AGAAGTTTTTGGGTGATTTTAAGCAAGCCGAATCTGTCCCAGCTGTTCAG
TCTG
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