CV712650

Overview
NameCV712650
Unique NameCV712650
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2938 contig Csv1_Contig2938:1..662. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712650 vs. ExPASy Swiss-Prot
Match: AGD7_ARATH (ADP-ribosylation factor GTPase-activating protein AGD7 OS=Arabidopsis thaliana GN=AGD7 PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.482e-38
Identity = 86/186 (46.24%), Postives = 108/186 (58.06%), Query Frame = 3
Query:    3 IKKMEAGGNERLNTFLSQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPWRDPPVVKETLNAGKSSSRPPLAQSASVXXXXXXXXXXXXXXWDSWDNDDFRSSNDMRRNQSVSDFR--GGSGGIMKG-----VMAMASQKVEEYTKEGWNNDNWQRNESESNGYYQEFNHGNKGRDSPAGGGQY 539
            IKKM+AGGNERLN FL+QYGI KETDI++KYN+NAAS+YRDRIQA+AEGR WRDPP+VKE++  G  + +PPL+Q                  WD+WDNDD   S DMRRNQS  DFR  GG G   K      + + +  +     KE +       NES+  G              P+ GG+Y
Sbjct:   69 IKKMDAGGNERLNNFLAQYGISKETDIISKYNSNAASVYRDRIQALAEGRQWRDPPIVKESVGGGLMNKKPPLSQGGG--------RDSGNGGWDNWDNDDSFRSTDMRRNQSAGDFRSSGGRGAPAKSKSSEDIYSRSQLEASAANKESFFAKRMAENESKPEGL------------PPSQGGKY 234          

HSP 2 Score: 76.6406 bits (187), Expect = 1.230e-13
Identity = 49/106 (46.23%), Postives = 60/106 (56.60%), Query Frame = 3
Query:  369 GIMKGVMAMASQKVEEYTKE---GWNNDNWQRNESESNGYYQEFNHGNKGRDSPAGGGQ-YSAGHHNSY---GXXXXXXXXXXXXXXXTPKGTGSGNND--SWAGW 659
            GIMKGVMA+ASQKVEE+TKE    WN    Q+N++E NGYYQ    GNK  +S  GG Q  S+GH+NSY                    PK + S ++D   WAGW
Sbjct:  318 GIMKGVMAIASQKVEEFTKEEASTWN----QQNKTEGNGYYQNSGIGNKTANSSFGGSQSSSSGHNNSYRNSNSWDDWGEENNSKKEAAPKVSTSNDDDDGGWAGW 419          
BLAST of CV712650 vs. ExPASy Swiss-Prot
Match: AGD6_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD6 OS=Arabidopsis thaliana GN=AGD6 PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.264e-34
Identity = 88/189 (46.56%), Postives = 106/189 (56.08%), Query Frame = 3
Query:    3 IKKMEAGGNERLNTFLSQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPWRDPPVVKETLNAGKSSSRPPLAQSASVXXXXXXXXXXXXXXWDSWDNDDFRSSNDMRRNQSVSDFRGGSGGIMKGVMAMASQKVEEYT----------KEGWNNDNWQRNESESNGYYQEFNHGNKGRDSPAGGGQY 539
            IKKMEAGGNERLN F +QYGI KETDI++KYN+NAAS+YRDRIQA+AEGRPW DPPVVKE      ++ +PPLAQ                  WDSWDNDD   S DMRRNQS +DFR  + G  +G    +    + YT          KE +       NES+  G              P+ GG+Y
Sbjct:   69 IKKMEAGGNERLNKFFAQYGIAKETDIISKYNSNAASVYRDRIQALAEGRPWNDPPVVKE------ANKKPPLAQGG-----YGNNNNNNNGGWDSWDNDDSYKS-DMRRNQSANDFR--ASGNREGAHVKSKSSEDIYTRSQLEASAAGKESFFARRMAENESKPEGL------------PPSQGGKY 231          

HSP 2 Score: 84.7297 bits (208), Expect = 4.516e-16
Identity = 49/109 (44.95%), Postives = 63/109 (57.80%), Query Frame = 3
Query:  369 GIMKGVMAMASQKVEEYTKEG---WNNDNWQRNESESNGYYQEFNHGNKGRDSPAGGGQ----YSAGHH----NSYGXXXXXXXXXXXXXXXTPKGTGSGN-NDSWAGW 659
            GIMKGVMAMA+QKVEE+TKEG   WN    Q++E+E NGYYQ F +GNK  +S  GGG+     ++GH+    NS                  PKG+ + N +D W GW
Sbjct:  316 GIMKGVMAMATQKVEEFTKEGSTSWN----QQSENEGNGYYQNFGNGNKAANSSVGGGRPQSSSTSGHYNNSQNSNSWDSWGENENKKTEAVAPKGSSASNDDDGWTGW 420          
The following BLAST results are available for this feature:
BLAST of CV712650 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
AGD7_ARATH5.482e-3846.24ADP-ribosylation factor GTPase-activating protein ... [more]
AGD6_ARATH1.264e-3446.56Probable ADP-ribosylation factor GTPase-activating... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_0001L04_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001L04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712650 ID=CV712650; Name=CV712650; organism=Citrus sinensis; type=EST; length=661bp
AGATCAAGAAAATGGAAGCTGGCGGCAACGAACGCCTCAACACGTTCCTC
TCCCAATACGGGATCCCTAAAGAAACGGATATCGTGACCAAATACAACAC
AAATGCCGCCAGCATTTATCGCGACAGAATCCAAGCTATAGCCGAGGGCC
GCCCCTGGCGGGACCCACCCGTGGTCAAAGAAACTTTGAACGCTGGGAAA
AGTAGTAGTAGGCCTCCGCTGGCACAGAGTGCTTCTGTCGGTGGCGTTGG
CAGGAATGGTAATTATGGCAATCATGGAGGGTGGGATAGTTGGGACAACG
ACGATTTTAGATCGTCGAATGATATGAGAAGGAACCAATCGGTTTCCGAT
TTTAGAGGCGGGAGTGGTGGCATCATGAAGGGAGTCATGGCAATGGCTTC
CCAGAAGGTTGAGGAGTACACTAAAGAAGGCTGGAACAATGATAACTGGC
AACGAAATGAAAGTGAGAGTAATGGATATTATCAGGAGTTTAACCATGGT
AACAAAGGTCGGGATTCTCCTGCTGGTGGTGGGCAGTACTCGGCTGGGCA
TCATAATTCTTATGGCTCAAGTTCTTGGGATGATTGGGACCAAAAAGACA
AGAAGGAAGATACTCCCAAAGGAACAGGGTCCGGTAACAATGACTCCTGG
GCTGGCTGGGA
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