CV712649

Overview
NameCV712649
Unique NameCV712649
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length862
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2938 contig Csv1_Contig2938:259..1121. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CV712649 vs. ExPASy Swiss-Prot
Match: AGD6_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD6 OS=Arabidopsis thaliana GN=AGD6 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 7.605e-34
Identity = 77/145 (53.10%), Postives = 95/145 (65.52%), Query Frame = -3 
Query:  351 GIMKGVMAMASQKVEEYTKEGWNNDNWQRNESESNGYYQEFNHGNKGRDSPAGGGQ----YSAGHHNSYGXXXXXXXXXXXXXXDT----PKGTGSGNNDS-WAGWDD--AKDDGYDNFYQSASDKKALGHNGKSDATWTGGGFL 752
            GIMKGVMAMA+QKVEE+TKEG  + N Q++E+E NGYYQ F +GNK  +S  GGG+     ++GH+N+                 T    PKG+ + N+D  W GWDD  AKDDG+D  YQSA DKK+ GHNGKSD  WTGGGFL
Sbjct:  316 GIMKGVMAMATQKVEEFTKEGSTSWN-QQSENEGNGYYQNFGNGNKAANSSVGGGRPQSSSTSGHYNNSQNSNSWDSWGENENKKTEAVAPKGSSASNDDDGWTGWDDHDAKDDGFDGHYQSAGDKKSAGHNGKSDTAWTGGGFL 459
[Close]
BLAST of CV712649 vs. ExPASy Swiss-Prot
Match: AGD7_ARATH (ADP-ribosylation factor GTPase-activating protein AGD7 OS=Arabidopsis thaliana GN=AGD7 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.319e-29
Identity = 76/142 (53.52%), Postives = 91/142 (64.08%), Query Frame = -3 
Query:  351 GIMKGVMAMASQKVEEYTKEGWNNDNWQRNESESNGYYQEFNHGNKGRDSPAGGGQYSA-GHHNSY---GXXXXXXXXXXXXXXDTPKGTGSGNNDS--WAGWDD--AKDDGYDNFYQSASDKKALGHNGKSDATWTGGGFL 752
            GIMKGVMA+ASQKVEE+TKE  +  N Q+N++E NGYYQ    GNK  +S  GG Q S+ GH+NSY                    PK + S ++D   WAGWDD  AKDD  D +YQ ASDKK++GHNGKSD  WTGGGFL
Sbjct:  318 GIMKGVMAIASQKVEEFTKEEASTWN-QQNKTEGNGYYQNSGIGNKTANSSFGGSQSSSSGHNNSYRNSNSWDDWGEENNSKKEAAPKVSTSNDDDDGGWAGWDDNDAKDD--DFYYQPASDKKSVGHNGKSDTAWTGGGFL 456
The following BLAST results are available for this feature:
BLAST of CV712649 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
AGD6_ARATH7.605e-3453.10Probable ADP-ribosylation factor GTPase-activating... [more]
AGD7_ARATH4.319e-2953.52ADP-ribosylation factor GTPase-activating protein ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_0001L04_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001L04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712649 ID=CV712649; Name=CV712649; organism=Citrus sinensis; type=EST; length=862bp
TTTTGGTCCGAACAACTTTGAATTTTCAAAGTCACAAATAATGTTTCCTC
ACACGAAACAGCGGTCCTTCTTTGGATGGGGCAATCTACCCCACTTAATA
GTTGTGTACATATATAAACTACTTCAAGACACAAAGACCTCACGAAGTGG
TCATGTAAAGTTTTGAAACAAGAAAAGAGAGAAAGGACTAAACATAGACT
AACCTTCACAAAAGCAACCCGCATACATTTGCGGGTCCAATTTTATCCAA
ACAACTTTCTTATCATTTGTACTATGGTAGATTTTGTCATAACCACCATC
TTCAGCATCCCAGCCAGCCACCAATTCATGAAACTAATCACCACTTACTA
GAGAAAGCCTCCTCCTGTCCATGTGGCATCTGACTTCCCATTGTGACCCA
AGGCTTTCTTATCAGATGCGCTTTGGTAGAAATTATCGTATCCATCGTCT
TTGGCATCATCCCAGCCAGCCCAGGAGTCATTGTTACCGGACCCTGTTCC
TTTGGGAGTATCTTCCTTCTTGTCTTTTTGGTCCCAATCATCCCAAGAAC
TTGAGCCATAAGAATTATGATGCCCAGCCGAGTACTGCCCACCACCAGCA
GGAGAATCCCGACCTTTGTTACCATGGTTAAACTCCTGATAATATCCATT
ACTCTCACTTTCATTTCGTTGCCAGTTATCATTGTTCCAGCCTTCTTTAG
TGTACTCCTCAACCTTCTGGGAAGCCATTGCCATGACTCCCTTCATGATG
CCACCACTCCCGCCTCTAAAATCGGAAACCGATTGGTTCCTTCTCATATC
ATTCGACGATCTAAAATCGTCGTTGTCCCAACTATCCCACCCTCCATGAT
TGCCATAATTAC
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