CV712646

Overview
NameCV712646
Unique NameCV712646
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length730
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712646 vs. ExPASy Swiss-Prot
Match: COX2_PEA (Cytochrome c oxidase subunit 2 OS=Pisum sativum GN=COX2 PE=3 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.631e-20
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 3
Query:  594 LEWLFLTIAPCDAAEPWQLGFQDAATPMMQGIIDLHHDIFFFLIL 728
            LEWLFLTIAPCDAAEPWQLGFQDAATPMMQGIIDLHHDIFFFLIL
Sbjct:    3 LEWLFLTIAPCDAAEPWQLGFQDAATPMMQGIIDLHHDIFFFLIL 47          
BLAST of CV712646 vs. ExPASy Swiss-Prot
Match: COX2_SOYBN (Cytochrome c oxidase subunit 2 OS=Glycine max GN=COX2 PE=3 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 4.746e-20
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 3
Query:  597 EWLFLTIAPCDAAEPWQLGFQDAATPMMQGIIDLHHDIFFFLIL 728
            EWLFLTIAPCDAAEPWQLGFQDAATPMMQGIIDLHHDIFFFLIL
Sbjct:    4 EWLFLTIAPCDAAEPWQLGFQDAATPMMQGIIDLHHDIFFFLIL 47          
BLAST of CV712646 vs. ExPASy Swiss-Prot
Match: COX2_BETVU (Cytochrome c oxidase subunit 2 OS=Beta vulgaris GN=COX2 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.096e-20
Identity = 46/50 (92.00%), Postives = 47/50 (94.00%), Query Frame = 3
Query:  579 MIVRLLEWLFLTIAPCDAAEPWQLGFQDAATPMMQGIIDLHHDIFFFLIL 728
            MIVR  EWLF T+APCDAAEPWQLGFQDAATPMMQGIIDLHHDIFFFLIL
Sbjct:    1 MIVR--EWLFFTMAPCDAAEPWQLGFQDAATPMMQGIIDLHHDIFFFLIL 48          
BLAST of CV712646 vs. ExPASy Swiss-Prot
Match: COX2_MAIZE (Cytochrome c oxidase subunit 2 OS=Zea mays GN=COX2 PE=2 SV=4)

HSP 1 Score: 94.3597 bits (233), Expect = 6.854e-19
Identity = 45/50 (90.00%), Postives = 46/50 (92.00%), Query Frame = 3
Query:  579 MIVRLLEWLFLTIAPCDAAEPWQLGFQDAATPMMQGIIDLHHDIFFFLIL 728
            MI+RLLE  F TIA CDAAEPWQLGFQDAATPMMQGIIDLHHDIFFFLIL
Sbjct:    1 MILRLLECRFFTIALCDAAEPWQLGFQDAATPMMQGIIDLHHDIFFFLIL 50          
BLAST of CV712646 vs. ExPASy Swiss-Prot
Match: COX2_ARATH (Cytochrome c oxidase subunit 2 OS=Arabidopsis thaliana GN=COX2 PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 6.854e-19
Identity = 41/46 (89.13%), Postives = 45/46 (97.83%), Query Frame = 3
Query:  591 LLEWLFLTIAPCDAAEPWQLGFQDAATPMMQGIIDLHHDIFFFLIL 728
            +L+WLF TI+PCDAAEPWQLGFQDAATP+MQGIIDLHHDIFFFLIL
Sbjct:    3 VLKWLFFTISPCDAAEPWQLGFQDAATPIMQGIIDLHHDIFFFLIL 48          
BLAST of CV712646 vs. ExPASy Swiss-Prot
Match: M1280_ARATH (Uncharacterized mitochondrial protein AtMg01280 OS=Arabidopsis thaliana GN=AtMg01280 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.994e-18
Identity = 41/46 (89.13%), Postives = 45/46 (97.83%), Query Frame = 3
Query:  591 LLEWLFLTIAPCDAAEPWQLGFQDAATPMMQGIIDLHHDIFFFLIL 728
            +L+WLFLTI+PCDAAEPWQLG QDAATP+MQGIIDLHHDIFFFLIL
Sbjct:    3 VLKWLFLTISPCDAAEPWQLGSQDAATPIMQGIIDLHHDIFFFLIL 48          
BLAST of CV712646 vs. ExPASy Swiss-Prot
Match: COX2_WHEAT (Cytochrome c oxidase subunit 2 OS=Triticum aestivum GN=COX2 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.442e-18
Identity = 44/50 (88.00%), Postives = 45/50 (90.00%), Query Frame = 3
Query:  579 MIVRLLEWLFLTIAPCDAAEPWQLGFQDAATPMMQGIIDLHHDIFFFLIL 728
            MI+R L   FLTIA CDAAEPWQLGFQDAATPMMQGIIDLHHDIFFFLIL
Sbjct:    1 MILRSLSCRFLTIALCDAAEPWQLGFQDAATPMMQGIIDLHHDIFFFLIL 50          
BLAST of CV712646 vs. ExPASy Swiss-Prot
Match: COX2_ORYSJ (Cytochrome c oxidase subunit 2 OS=Oryza sativa subsp. japonica GN=COX2 PE=3 SV=4)

HSP 1 Score: 90.5077 bits (223), Expect = 9.896e-18
Identity = 44/50 (88.00%), Postives = 45/50 (90.00%), Query Frame = 3
Query:  579 MIVRLLEWLFLTIAPCDAAEPWQLGFQDAATPMMQGIIDLHHDIFFFLIL 728
            MI+R LE  FLTIA CDAAEPWQLG QDAATPMMQGIIDLHHDIFFFLIL
Sbjct:    1 MILRSLECRFLTIALCDAAEPWQLGSQDAATPMMQGIIDLHHDIFFFLIL 50          
BLAST of CV712646 vs. ExPASy Swiss-Prot
Match: COX2_OENBE (Cytochrome c oxidase subunit 2 OS=Oenothera bertiana GN=COX2 PE=3 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 3.184e-16
Identity = 40/44 (90.91%), Postives = 40/44 (90.91%), Query Frame = 3
Query:  597 EWLFLTIAPCDAAEPWQLGFQDAATPMMQGIIDLHHDIFFFLIL 728
            E LF TIA CDAAEPWQLGFQDAATPMMQGIIDLHHDI FFLIL
Sbjct:    5 ECLFFTIALCDAAEPWQLGFQDAATPMMQGIIDLHHDILFFLIL 48          
BLAST of CV712646 vs. ExPASy Swiss-Prot
Match: COXT_SOYBN (Cytochrome c oxidase subunit 2, mitochondrial (Fragment) OS=Glycine max GN=COX2 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.263e-16
Identity = 37/48 (77.08%), Postives = 43/48 (89.58%), Query Frame = 3
Query:  582 IVRLLEWLFLTIAPCDAAEPWQLGFQDAATPMMQGIIDLHHDIFFFLI 725
            + R ++ +  TIAPCDAAEPWQLGFQDAATP+MQGIIDLHHDIFFF+I
Sbjct:  140 VSRWMDQVIPTIAPCDAAEPWQLGFQDAATPIMQGIIDLHHDIFFFVI 187          
The following BLAST results are available for this feature:
BLAST of CV712646 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
COX2_PEA1.631e-20100.00Cytochrome c oxidase subunit 2 OS=Pisum sativum GN... [more]
COX2_SOYBN4.746e-20100.00Cytochrome c oxidase subunit 2 OS=Glycine max GN=C... [more]
COX2_BETVU8.096e-2092.00Cytochrome c oxidase subunit 2 OS=Beta vulgaris GN... [more]
COX2_MAIZE6.854e-1990.00Cytochrome c oxidase subunit 2 OS=Zea mays GN=COX2... [more]
COX2_ARATH6.854e-1989.13Cytochrome c oxidase subunit 2 OS=Arabidopsis thal... [more]
M1280_ARATH1.994e-1889.13Uncharacterized mitochondrial protein AtMg01280 OS... [more]
COX2_WHEAT4.442e-1888.00Cytochrome c oxidase subunit 2 OS=Triticum aestivu... [more]
COX2_ORYSJ9.896e-1888.00Cytochrome c oxidase subunit 2 OS=Oryza sativa sub... [more]
COX2_OENBE3.184e-1690.91Cytochrome c oxidase subunit 2 OS=Oenothera bertia... [more]
COXT_SOYBN9.263e-1677.08Cytochrome c oxidase subunit 2, mitochondrial (Fra... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_0001L02_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001L02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712646 ID=CV712646; Name=CV712646; organism=Citrus sinensis; type=EST; length=730bp
CAAGCTTTCCTTGTTTAGTATTTGCTCTTGATTTGTTCTTGAAAATGGTC
AACTCGACGTGGCCAGCTCATCTGAAAAGTAAATTATTTCATATTTTGGT
TATTACGAGAAGGCAGCCCCTAACCTTAAGGGAAGCCGAGAACCTGTGTG
ATCACTACCATAGCACTACTACAGCCTCTTGGCCGTTTACTAATGGAAAG
GAGTCTTAGTCTTGGTCTAACCATCTGGAATGGTCAGGGCACTCTTGCCA
TTGCCATATTCATGTTGGTGTGGTTTACACTAGTGCTGATGCAATATTGT
TGTCTTTATAGAGCTAGGAGTCACTCTTTTCACTTGAAAGGAAGAGGAAC
AGCCCTTCCCGCCCTTACAACCCGATTTGGCGAAATAAAGAATATCATAT
AAGAACAAAACGCCCGATTTGGCAAAGAAAAAGCTGACTGAGTGTTCATT
AATGCCCAAAACTCCCATGCCTTTCTTGGTTGGACCAAGGCGATTTCTGT
CTTCCTGAATTGGGATAGTAAGAGTCAGTCTCTCTTTTTTGGGGGGGAGC
AGAGCAGTCAAAGAATGAAGCAAAGCAAATGATTGTTCGTTTACTAGAAT
GGTTATTCCTTACAATTGCTCCTTGTGATGCAGCGGAACCGTGGCAATTA
GGATTTCAAGACGCAGCAACACCTATGATGCAAGGAATAATAGACTTACA
TCACGATATCTTTTTCTTTCTCATTCTGAT
back to top