CV712645

Overview
NameCV712645
Unique NameCV712645
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length804
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4901 contig Csv1_Contig4901:42..845. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_ARATH (Cytochrome c oxidase subunit 2 OS=Arabidopsis thaliana GN=COX2 PE=1 SV=2)

HSP 1 Score: 358.992 bits (920), Expect = 1.764e-98
Identity = 175/180 (97.22%), Postives = 176/180 (97.78%), Query Frame = -3
Query:  263 LRILVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 802
            L ILVRALWHFHYKKN IPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSL FDSYMIPE+DLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISI VQREGVYYGQCSEICGTNHAFM
Sbjct:   54 LWILVRALWHFHYKKNAIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLTFDSYMIPEEDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISILVQREGVYYGQCSEICGTNHAFM 233          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_OENBE (Cytochrome c oxidase subunit 2 OS=Oenothera bertiana GN=COX2 PE=3 SV=3)

HSP 1 Score: 353.214 bits (905), Expect = 9.680e-97
Identity = 170/180 (94.44%), Postives = 176/180 (97.78%), Query Frame = -3
Query:  263 LRILVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 802
            L ILVRALWHF+YKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPA+T+KAIGHQWYWTYEYSDYNSSDEQSL FDSYMIPEDDLELGQLRLLEVDNRVVVP KT+LR+IVTSADVLHSWAVPSLGVKCDAVPGRLNQIS+ VQREGVYYGQCSEICGTNHAFM
Sbjct:   54 LWILVRALWHFYYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAMTLKAIGHQWYWTYEYSDYNSSDEQSLTFDSYMIPEDDLELGQLRLLEVDNRVVVPVKTNLRLIVTSADVLHSWAVPSLGVKCDAVPGRLNQISMLVQREGVYYGQCSEICGTNHAFM 233          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COXT_SOYBN (Cytochrome c oxidase subunit 2, mitochondrial (Fragment) OS=Glycine max GN=COX2 PE=3 SV=1)

HSP 1 Score: 346.665 bits (888), Expect = 9.060e-95
Identity = 163/178 (91.57%), Postives = 172/178 (96.63%), Query Frame = -3
Query:  263 ILVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 796
            +L+RALWHF  K NPIPQRIVHGTTIEILWTIFPS+ILMFIAIPSFALLYSMD++VVDPAITIKAIGHQWYWTYEYSDYN+SDEQSL FDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLR+I+TSADVLHSWAVPSLGVKCDAVPGRLNQIS  +QREGVYYGQCSEICGTNHAFM
Sbjct:  196 VLLRALWHFRSKMNPIPQRIVHGTTIEILWTIFPSVILMFIAIPSFALLYSMDDIVVDPAITIKAIGHQWYWTYEYSDYNNSDEQSLAFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRVIITSADVLHSWAVPSLGVKCDAVPGRLNQISTFIQREGVYYGQCSEICGTNHAFM 373          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_MARPO (Cytochrome c oxidase subunit 2 OS=Marchantia polymorpha GN=COX2 PE=3 SV=3)

HSP 1 Score: 345.51 bits (885), Expect = 2.018e-94
Identity = 165/180 (91.67%), Postives = 174/180 (96.67%), Query Frame = -3
Query:  263 LRILVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 802
            L +LVRALWHFHYK+NPIP+RIVHGTTIEI+WTIFPSIILMFIAIPSFALLYSMDEVV DPAITIKAIGHQWYWTYEYSDYNSSDEQSL FDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLR+I+TSADVLHSWAVPSLGVKCDAVPGRLNQ SI ++REGVYYGQCSE+CGTNH FM
Sbjct:   52 LWMLVRALWHFHYKRNPIPERIVHGTTIEIIWTIFPSIILMFIAIPSFALLYSMDEVV-DPAITIKAIGHQWYWTYEYSDYNSSDEQSLTFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRMIITSADVLHSWAVPSLGVKCDAVPGRLNQTSIFIKREGVYYGQCSELCGTNHGFM 230          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_SOYBN (Cytochrome c oxidase subunit 2 OS=Glycine max GN=COX2 PE=3 SV=2)

HSP 1 Score: 342.813 bits (878), Expect = 1.308e-93
Identity = 170/178 (95.51%), Postives = 170/178 (95.51%), Query Frame = -3
Query:  266 RILVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAF 799
            RILVRALWHFHYKKNPIPQRIVHGTTIEIL TIFPSII MFIAIPSFALLYSMDEVVVDPAITIKAIGHQWY TYEYSDYNSSDEQSL FDSY IPEDDLELGQ RLLEVDNRVVVPAKTHLRIIVT ADV HSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAF
Sbjct:   54 RILVRALWHFHYKKNPIPQRIVHGTTIEILRTIFPSIIPMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQSRLLEVDNRVVVPAKTHLRIIVTPADVPHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAF 231          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_MAIZE (Cytochrome c oxidase subunit 2 OS=Zea mays GN=COX2 PE=2 SV=4)

HSP 1 Score: 340.502 bits (872), Expect = 6.493e-93
Identity = 164/180 (91.11%), Postives = 172/180 (95.56%), Query Frame = -3
Query:  263 LRILVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 802
            L +LVRALWHF+ + NPIPQRIVHGTTIEI+WTIFPS+IL+FIAIPSFALLYSMD V+VDPAITIKAIGHQWYWTYEYSDYNSSDEQSL FDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLR+IVTSADVLHSWAVPSLGVKCDAVPGRLN  SI VQREGVYYGQCSEICGTNHAFM
Sbjct:   56 LWMLVRALWHFNEQTNPIPQRIVHGTTIEIIWTIFPSVILLFIAIPSFALLYSMDGVLVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLTFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRMIVTSADVLHSWAVPSLGVKCDAVPGRLNLTSILVQREGVYYGQCSEICGTNHAFM 235          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_BETVU (Cytochrome c oxidase subunit 2 OS=Beta vulgaris GN=COX2 PE=2 SV=1)

HSP 1 Score: 337.806 bits (865), Expect = 4.209e-92
Identity = 166/178 (93.26%), Postives = 169/178 (94.94%), Query Frame = -3
Query:  263 ILVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 796
            ILVRALWHFHYKKNPIPQRIVHGTTIEI+ TIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWY +YEYSDYNSSDEQSL FDSY IPEDD ELGQ RLLEVDNRVVVPAKTH+RIIVTSADVLHSWAVPS GVKCDAVPGRLNQ SI VQREGVYYGQCSEICGTNHAFM
Sbjct:   56 ILVRALWHFHYKKNPIPQRIVHGTTIEIIRTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYRSYEYSDYNSSDEQSLTFDSYTIPEDDPELGQSRLLEVDNRVVVPAKTHIRIIVTSADVLHSWAVPSSGVKCDAVPGRLNQTSILVQREGVYYGQCSEICGTNHAFM 233          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_PEA (Cytochrome c oxidase subunit 2 OS=Pisum sativum GN=COX2 PE=3 SV=2)

HSP 1 Score: 335.109 bits (858), Expect = 2.728e-91
Identity = 166/178 (93.26%), Postives = 168/178 (94.38%), Query Frame = -3
Query:  266 RILVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAF 799
            RILVRALWHFHYKKNPIPQRIVHGTTIEIL TIFPSII MFIAIPSFALLYSMD V+VDPA+TIKAIGHQWY TYEYSDYNSSDEQSL FDSY IPEDDLELGQ  LLEVDNRVVVPAKTHLRIIVT ADV HSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAF
Sbjct:   54 RILVRALWHFHYKKNPIPQRIVHGTTIEILRTIFPSIIPMFIAIPSFALLYSMDGVLVDPAMTIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQSGLLEVDNRVVVPAKTHLRIIVTPADVPHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAF 231          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_DAUCA (Cytochrome c oxidase subunit 2 OS=Daucus carota GN=COX2 PE=3 SV=1)

HSP 1 Score: 335.109 bits (858), Expect = 2.728e-91
Identity = 167/178 (93.82%), Postives = 168/178 (94.38%), Query Frame = -3
Query:  266 RILVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAF 799
            RILVRALWHFH KKNPIPQRIVHGTTIEIL TIFPSII MFIAIPSFALLYSMDEVVVDPA+TIKAIGHQWY TYEYSDYNSSDEQSL FDSY IPEDD ELGQ RLLEVDNRVVVPAKTHLRIIVTSADV HSWAVPS GVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAF
Sbjct:   56 RILVRALWHFHSKKNPIPQRIVHGTTIEILRTIFPSIIPMFIAIPSFALLYSMDEVVVDPAMTIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDPELGQSRLLEVDNRVVVPAKTHLRIIVTSADVPHSWAVPSSGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAF 233          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_VIGUN (Cytochrome c oxidase subunit 2, mitochondrial (Fragment) OS=Vigna unguiculata GN=COX2 PE=2 SV=2)

HSP 1 Score: 333.183 bits (853), Expect = 1.037e-90
Identity = 159/180 (88.33%), Postives = 169/180 (93.89%), Query Frame = -3
Query:  263 LRILVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 802
            L +L RALW F  K +PIPQRIVHGTTIEILWTI PSIILMFIAIPSF LLYSMD+VVVDPAITIKAIGHQWYW+YEYSDYN+SDEQSL FDSYM+PEDDLELGQLRLLEVDNRVVVPAKTHLR+++TSADVLHSWAVPSLGVKCDAVPGRLNQIS  +QREGVYYGQCSEICGTNHAFM
Sbjct:  176 LWVLSRALWCFRSKISPIPQRIVHGTTIEILWTILPSIILMFIAIPSFTLLYSMDDVVVDPAITIKAIGHQWYWSYEYSDYNNSDEQSLAFDSYMVPEDDLELGQLRLLEVDNRVVVPAKTHLRVLITSADVLHSWAVPSLGVKCDAVPGRLNQISTFIQREGVYYGQCSEICGTNHAFM 355          
The following BLAST results are available for this feature:
BLAST of CV712645 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 312
Match NameE-valueIdentityDescription
COX2_ARATH1.764e-9897.22Cytochrome c oxidase subunit 2 OS=Arabidopsis thal... [more]
COX2_OENBE9.680e-9794.44Cytochrome c oxidase subunit 2 OS=Oenothera bertia... [more]
COXT_SOYBN9.060e-9591.57Cytochrome c oxidase subunit 2, mitochondrial (Fra... [more]
COX2_MARPO2.018e-9491.67Cytochrome c oxidase subunit 2 OS=Marchantia polym... [more]
COX2_SOYBN1.308e-9395.51Cytochrome c oxidase subunit 2 OS=Glycine max GN=C... [more]
COX2_MAIZE6.493e-9391.11Cytochrome c oxidase subunit 2 OS=Zea mays GN=COX2... [more]
COX2_BETVU4.209e-9293.26Cytochrome c oxidase subunit 2 OS=Beta vulgaris GN... [more]
COX2_PEA2.728e-9193.26Cytochrome c oxidase subunit 2 OS=Pisum sativum GN... [more]
COX2_DAUCA2.728e-9193.82Cytochrome c oxidase subunit 2 OS=Daucus carota GN... [more]
COX2_VIGUN1.037e-9088.33Cytochrome c oxidase subunit 2, mitochondrial (Fra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001L02_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001L02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712645 ID=CV712645; Name=CV712645; organism=Citrus sinensis; type=EST; length=804bp
ATCAACTTAGGGCGCTANTTGGCCACTAACCACTCGCTCGCCGGCCGTTC
GGGCTCCGCGTTTCAAGTTCGTTATCCTAACCGTCTCCTCTGCTCCACCG
GGAGCCTGGCCCCTTCTTCTATCTTATCTACTGCCTTGCTCCTCGGCTCC
CTACAGCTCCAGCCGCTCGCTGTAATAGCTTGCTTCTCGGGTGGCTCGCA
CCCCGGGTGGTGCGGCTGAGCCAGAGTGGGCTCAGCAGTCGGCCTATGTT
TCCGGGCGCACGCATAAAGGCATGATTAGTTCCACAAATCTCACTGCACT
GACCATAGTAAACTCCTTCTCGTTGTACCGAAATAGAGATCTGATTTAAA
CGACCAGGTACAGCATCACATTTGACACCTAAGGAAGGTACAGCCCAACT
ATGAAGTACATCAGCAGATGTTACAATAATACGTAGATGAGTTTTGGCTG
GTACAACCACTCTATTGTCCACTTCTAATAAACGTAATTGACCCAATTCT
AGATCATCTTCTGGAATCATATAACTGTCAAAAATGAGTGACTGTTCATC
GGAACTGTTATAGTCTGAATACTCATAAGTCCAATACCATTGATGCCCAA
TAGCTTTGATAGTGATGGCTGGATCTACTACTACCTCGTCCATTGAGTAT
AACAGAGCAAATGATGGTATAGCAATGAACATCAAGATGATACTAGGAAA
GATGGTCCAAAGAATCTCGATAGTAGTTCCATGAACAATCCTTTGCGGGA
TTGGATTTTTTTTATAATGGAAATGCCATAAAGCACGAACCAAGATCCGT
AATA
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