CV712643

Overview
NameCV712643
Unique NameCV712643
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1032 contig Csv1_Contig1032:36..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712643 vs. ExPASy Swiss-Prot
Match: UAF30_YEAST (Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae GN=UAF30 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.794e-13
Identity = 37/88 (42.05%), Postives = 58/88 (65.91%), Query Frame = -1
Query:  242 KRGAPTRPTGISKVSPVSPALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNAVGFLEIGKLLSPHFVK 505
            K+G  ++    ++   +S +LA  LG  E +R++ VR++WA++K HNLQNP NK+EILCDEKL+ I  GK +    E+ K+L+ H  +
Sbjct:  110 KKGTVSKSPISTRKVTLSKSLASLLGEHELTRTEVVRRLWAYIKAHNLQNPNNKKEILCDEKLELIL-GK-STNMFEMHKILASHMTE 195          
BLAST of CV712643 vs. ExPASy Swiss-Prot
Match: UAF30_SCHPO (Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe GN=spp27 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.186e-11
Identity = 30/68 (44.12%), Postives = 46/68 (67.65%), Query Frame = -1
Query:  302 KRGAPTRPTGISKVSPVSPALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFE 505
            KR        ++K   +SP LA+FLG  + SR   V+++W ++K H+LQ+P +KR ILCD+KLK++FE
Sbjct:  107 KRNQDPANNPLNKPMKLSPKLAEFLGLEQLSRPQTVKKLWEYIKAHDLQDPNDKRTILCDDKLKSVFE 174          
BLAST of CV712643 vs. ExPASy Swiss-Prot
Match: TRI1_YEAST (Protein TRI1 OS=Saccharomyces cerevisiae GN=TRI1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.728e-11
Identity = 34/69 (49.28%), Postives = 48/69 (69.57%), Query Frame = -1
Query:  251 VSPALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNAVGFLEIGKLLSPH 457
            +S  L KFLG+ E  R+  V+ IW ++K H+LQNP+++REILCDEK++ IF GK    F  + KLL+ H
Sbjct:  126 LSAPLQKFLGSEELPRTQVVKMIWQYIKEHDLQNPKDRREILCDEKMEPIF-GKKMTMF-SMNKLLTKH 192          
The following BLAST results are available for this feature:
BLAST of CV712643 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
UAF30_YEAST6.794e-1342.05Upstream activation factor subunit UAF30 OS=Saccha... [more]
UAF30_SCHPO2.186e-1144.12Upstream activation factor subunit spp27 OS=Schizo... [more]
TRI1_YEAST3.728e-1149.28Protein TRI1 OS=Saccharomyces cerevisiae GN=TRI1 P... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_0001L01_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001L01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712643 ID=CV712643; Name=CV712643; organism=Citrus sinensis; type=EST; length=694bp
GGAACCAAGACAGGGTATGAACTTCTTCCCCTCACTAATTTTTACAGCAT
GTCCACCTAAACAATTTGAAAAGAGTCACAAACTCAACCATGAGACCAAC
CATGTATCAACATAAGAACGCAATTACATCAACAAAAGGTTATGAAAAGT
GACAAGAGCTCCCTCATGGAGTTGGGAGAGCAATTTGAAGCCAAACACCT
GTACTTGTTATCAGAATCAGCAGTCAAGGACCTCAAGCAGTCTTCACGAA
ATGGGGGCTCAACAGTTTCCCAATCTCCAGGAATCCAACAGCATTTTTCC
CTTCGAAGATGGCTTTCAGCTTCTCATCACAGAGGATTTCCCGCTTGTTC
TCAGGATTCTGGAGGTTGTGGGTCTTGACGTGGGCCCAGATCTGACGGAC
GGCGTCGGAGCGGGAGGCTTCAGGGGCGCCGAGAAATTTCGCAAGCGCAG
GAGAGACAGGGCTCACCTTGGAAATTCCAGTAGGTCGAGTAGGTGCACCG
CGCTTTACTGGCGATTTGGCTCTGGGTTTCTTCGTTGTTTTTGATTTCGC
TTTAGTGGAAGCCGCTGAGGAGGCAGCGGCAGAGGACTTGGCCGGAGCCA
GGAGGGCCCGGCAGCCGTTGAAAACCCTAGCGGCAGCTGAAGACATTGCG
ATCACCAAGTATTTGTTAGTTTGCTTGAGAGTGAACTGCCGCCT
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