CV712642

Overview
NameCV712642
Unique NameCV712642
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2594 contig Csv1_Contig2594:6..630. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CV712642 vs. ExPASy Swiss-Prot
Match: RL35_EUPES (60S ribosomal protein L35 OS=Euphorbia esula GN=RPL35 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.060e-48
Identity = 102/123 (82.93%), Postives = 105/123 (85.37%), Query Frame = 3 
Query:   57 MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIKV 425
            MARIKVHELRQK+K +               RVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQK ALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQ SLKTEREKK+EMYFPMRKYAIKV
Sbjct:    1 MARIKVHELRQKTKAELLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKLALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQQSLKTEREKKKEMYFPMRKYAIKV 123
[Close]
BLAST of CV712642 vs. ExPASy Swiss-Prot
Match: RL352_ARATH (60S ribosomal protein L35-2 OS=Arabidopsis thaliana GN=RPL35B PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 4.027e-48
Identity = 101/123 (82.11%), Postives = 105/123 (85.37%), Query Frame = 3 
Query:   57 MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIKV 425
            MARIKVHELR+KSK D               RVAKVTGGAPNKLSKIKVVR SIAQVLTVISQKQK+ALREAYKNKK LPLDLRPKKTRAIRRRLTKHQASLKTEREKK+EMYFP+RKYAIKV
Sbjct:    1 MARIKVHELREKSKADLSGQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTVISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYAIKV 123
[Close]
BLAST of CV712642 vs. ExPASy Swiss-Prot
Match: RL354_ARATH (60S ribosomal protein L35-4 OS=Arabidopsis thaliana GN=RPL35D PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 6.869e-48
Identity = 101/123 (82.11%), Postives = 104/123 (84.55%), Query Frame = 3 
Query:   57 MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIKV 425
            MARIKVHELR KSK D               RVAKVTGGAPNKLSKIKVVR SIAQVLTVISQKQK+ALREAYKNKK LPLDLRPKKTRAIRRRLTKHQASLKTEREKK+EMYFP+RKYAIKV
Sbjct:    1 MARIKVHELRDKSKTDLQNQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTVISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPVRKYAIKV 123
[Close]
BLAST of CV712642 vs. ExPASy Swiss-Prot
Match: RL351_ARATH (60S ribosomal protein L35-1 OS=Arabidopsis thaliana GN=RPL35A PE=1 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 3.409e-47
Identity = 100/123 (81.30%), Postives = 104/123 (84.55%), Query Frame = 3 
Query:   57 MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIKV 425
            MARIKVHELR+KSK D               RVAKVTGGAPNKLSKIKVVR SIAQVLTV SQKQK+ALREAYKNKK LPLDLRPKKTRAIRRRLTKHQASLKTEREKK+EMYFP+RKYAIKV
Sbjct:    1 MARIKVHELREKSKSDLQNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTVSSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYAIKV 123
[Close]
BLAST of CV712642 vs. ExPASy Swiss-Prot
Match: RL353_ARATH (60S ribosomal protein L35-3 OS=Arabidopsis thaliana GN=RPL35C PE=1 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.295e-46
Identity = 99/123 (80.49%), Postives = 103/123 (83.74%), Query Frame = 3 
Query:   57 MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIKV 425
            MARIKVHELR KSK D               RVAKVTGGAPNKLSKIKVVR SIAQVLTV SQKQK+ALREAYKNKK LPLDLRPKKTRAIRRRLTKHQASLKTEREKK++MYFP+RKYAIKV
Sbjct:    1 MARIKVHELRDKSKSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTVSSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKDMYFPIRKYAIKV 123
[Close]
BLAST of CV712642 vs. ExPASy Swiss-Prot
Match: RL35_RAT (60S ribosomal protein L35 OS=Rattus norvegicus GN=Rpl35 PE=1 SV=3)

HSP 1 Score: 136.732 bits (343), Expect = 9.012e-32
Identity = 70/122 (57.38%), Postives = 90/122 (73.77%), Query Frame = 3 
Query:   57 MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 422
            MA+IK  +LR K K +               RVAKVTGGA +KLSKI+VVR SIA+VLTVI+Q QK  LR+ YK KK+ PLDLRPKKTRA+RRRLTKH+  LKT++++++E  +P+RKYA+K
Sbjct:    1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLTKHEEKLKTKKQQRKERLYPLRKYAVK 122
[Close]
BLAST of CV712642 vs. ExPASy Swiss-Prot
Match: RL35_MOUSE (60S ribosomal protein L35 OS=Mus musculus GN=Rpl35 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.012e-32
Identity = 70/122 (57.38%), Postives = 90/122 (73.77%), Query Frame = 3 
Query:   57 MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 422
            MA+IK  +LR K K +               RVAKVTGGA +KLSKI+VVR SIA+VLTVI+Q QK  LR+ YK KK+ PLDLRPKKTRA+RRRLTKH+  LKT++++++E  +P+RKYA+K
Sbjct:    1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLTKHEEKLKTKKQQRKERLYPLRKYAVK 122
[Close]
BLAST of CV712642 vs. ExPASy Swiss-Prot
Match: RL35_HUMAN (60S ribosomal protein L35 OS=Homo sapiens GN=RPL35 PE=1 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 2.622e-31
Identity = 69/122 (56.56%), Postives = 90/122 (73.77%), Query Frame = 3 
Query:   57 MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 422
            MA+IK  +LR K K +               RVAKVTGGA +KLSKI+VVR SIA+VLTVI+Q QK  LR+ YK KK+ PLDLRPKKTRA+RRRL KH+ +LKT++++++E  +P+RKYA+K
Sbjct:    1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPLRKYAVK 122
[Close]
BLAST of CV712642 vs. ExPASy Swiss-Prot
Match: RL35_CHICK (60S ribosomal protein L35 OS=Gallus gallus GN=RPL35 PE=2 SV=3)

HSP 1 Score: 135.191 bits (339), Expect = 2.622e-31
Identity = 70/122 (57.38%), Postives = 90/122 (73.77%), Query Frame = 3 
Query:   57 MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 422
            MA+IK  +LR K K +               RVAKVTGGA +KLSKI+VVR SIA+VLTVI+Q QK  LR+ YK KK+ PLDLRPKKTRA+RRRL KH+ +LKT++++++E  +P+RKYAIK
Sbjct:    1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPVRKYAIK 122
[Close]
BLAST of CV712642 vs. ExPASy Swiss-Prot
Match: RL35_BOVIN (60S ribosomal protein L35 OS=Bos taurus GN=RPL35 PE=2 SV=3)

HSP 1 Score: 135.191 bits (339), Expect = 2.622e-31
Identity = 69/122 (56.56%), Postives = 90/122 (73.77%), Query Frame = 3 
Query:   57 MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 422
            MA+IK  +LR K K +               RVAKVTGGA +KLSKI+VVR SIA+VLTVI+Q QK  LR+ YK KK+ PLDLRPKKTRA+RRRL KH+ +LKT++++++E  +P+RKYA+K
Sbjct:    1 MAKIKARDLRGKKKEELLKQLEDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPLRKYAVK 122
The following BLAST results are available for this feature:
BLAST of CV712642 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL35_EUPES1.060e-4882.9360S ribosomal protein L35 OS=Euphorbia esula GN=RP... [more]
RL352_ARATH4.027e-4882.1160S ribosomal protein L35-2 OS=Arabidopsis thalian... [more]
RL354_ARATH6.869e-4882.1160S ribosomal protein L35-4 OS=Arabidopsis thalian... [more]
RL351_ARATH3.409e-4781.3060S ribosomal protein L35-1 OS=Arabidopsis thalian... [more]
RL353_ARATH1.295e-4680.4960S ribosomal protein L35-3 OS=Arabidopsis thalian... [more]
RL35_RAT9.012e-3257.3860S ribosomal protein L35 OS=Rattus norvegicus GN=... [more]
RL35_MOUSE9.012e-3257.3860S ribosomal protein L35 OS=Mus musculus GN=Rpl35... [more]
RL35_HUMAN2.622e-3156.5660S ribosomal protein L35 OS=Homo sapiens GN=RPL35... [more]
RL35_CHICK2.622e-3157.3860S ribosomal protein L35 OS=Gallus gallus GN=RPL3... [more]
RL35_BOVIN2.622e-3156.5660S ribosomal protein L35 OS=Bos taurus GN=RPL35 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001K24_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001K24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712642 ID=CV712642; Name=CV712642; organism=Citrus sinensis; type=EST; length=625bp
CATACGCATAAGCAGAGGAAGCCGCCGTTGCAGGAGCAGAGACACCAAAC
GTAGCAATGGCTAGGATCAAGGTGCATGAGCTGAGGCAGAAATCGAAGGT
GGATCTTTTGAACCAGTTGAAGGAACTCAAGGCTGAGCTCGCCCTCCTTC
GCGTTGCTAAGGTCACCGGCGGTGCCCCTAACAAGCTATCCAAGATCAAG
GTGGTGAGGTTGTCGATCGCACAAGTGTTGACTGTCATTTCACAAAAGCA
GAAGGCTGCATTGAGGGAGGCATACAAGAATAAGAAGTTCTTGCCCCTTG
ATCTGCGTCCCAAGAAGACCCGGGCTATCAGGAGAAGGCTTACCAAGCAC
CAGGCTTCACTGAAGACCGAGCGGGAGAAGAAGAGGGAGATGTACTTTCC
CATGAGGAAGTACGCTATTAAGGTGTAGGCTAGAATCTTTTTCTAGGAGT
ATCTTGGTATCTTGCAGTGACGAACCTATTTTGTTGACAAATTTTTACTT
TGTTACCTTTTCAAATATCATTTTTGTTCAATCTTATGTGTGTAAAACTT
GAAGGGTGCATCTCAACCTAAACAAGATGTGCTAGATTGTGATGGAATAG
CAGTCAAGATAGGATTTCTGTTAAA
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