CV712632

Overview
NameCV712632
Unique NameCV712632
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length150
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2224 contig Csv1_Contig2224:387..536. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712632 vs. ExPASy Swiss-Prot
Match: XTH24_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 24 OS=Arabidopsis thaliana GN=XTH24 PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 8.114e-21
Identity = 41/50 (82.00%), Postives = 46/50 (92.00%), Query Frame = 1
Query:    1 KFLGNLSGDPYTLHTNVVTNGKSDR*QQFHLWFDPTADFHTYSVLWNPQR 150
            +FLGN+SGDPYTLHTNV T GK D+ QQFHLWFDPTA+FHTYS+LWNPQR
Sbjct:  102 EFLGNMSGDPYTLHTNVYTQGKGDKEQQFHLWFDPTANFHTYSILWNPQR 151          
BLAST of CV712632 vs. ExPASy Swiss-Prot
Match: XTH23_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 23 OS=Arabidopsis thaliana GN=XTH23 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.384e-20
Identity = 42/50 (84.00%), Postives = 45/50 (90.00%), Query Frame = 1
Query:    1 KFLGNLSGDPYTLHTNVVTNGKSDR*QQFHLWFDPTADFHTYSVLWNPQR 150
            +FLGNLSGDPYTLHTNV T GK DR QQF LWFDPT+DFHTYS+LWNPQR
Sbjct:  104 EFLGNLSGDPYTLHTNVFTQGKGDREQQFKLWFDPTSDFHTYSILWNPQR 153          
BLAST of CV712632 vs. ExPASy Swiss-Prot
Match: XTH25_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 25 OS=Arabidopsis thaliana GN=XTH25 PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 2.361e-20
Identity = 41/48 (85.42%), Postives = 44/48 (91.67%), Query Frame = 1
Query:    1 KFLGNLSGDPYTLHTNVVTNGKSDR*QQFHLWFDPTADFHTYSVLWNP 144
            +FLGNL+GDPYT+HTNV T GK DR QQFHLWFDPTADFHTYSVLWNP
Sbjct:  108 EFLGNLTGDPYTMHTNVYTQGKGDREQQFHLWFDPTADFHTYSVLWNP 155          
BLAST of CV712632 vs. ExPASy Swiss-Prot
Match: XTH20_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 20 OS=Arabidopsis thaliana GN=XTH20 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.295e-18
Identity = 37/50 (74.00%), Postives = 42/50 (84.00%), Query Frame = 1
Query:    1 KFLGNLSGDPYTLHTNVVTNGKSDR*QQFHLWFDPTADFHTYSVLWNPQR 150
            +FLGN+SG PYTLHTNV T G  D+ QQFHLWFDPT DFHTY ++WNPQR
Sbjct:  108 EFLGNISGHPYTLHTNVYTKGTGDKEQQFHLWFDPTVDFHTYCIIWNPQR 157          
BLAST of CV712632 vs. ExPASy Swiss-Prot
Match: XTH22_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 22 OS=Arabidopsis thaliana GN=XTH22 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.692e-18
Identity = 38/50 (76.00%), Postives = 44/50 (88.00%), Query Frame = 1
Query:    1 KFLGNLSGDPYTLHTNVVTNGKSDR*QQFHLWFDPTADFHTYSVLWNPQR 150
            +FLGN SG+PYTLHTNV T GK D+ QQF LWFDPTA+FHTY++LWNPQR
Sbjct:  101 EFLGNSSGEPYTLHTNVYTQGKGDKEQQFKLWFDPTANFHTYTILWNPQR 150          
BLAST of CV712632 vs. ExPASy Swiss-Prot
Match: XTH19_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 19 OS=Arabidopsis thaliana GN=XTH19 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.886e-18
Identity = 37/50 (74.00%), Postives = 42/50 (84.00%), Query Frame = 1
Query:    1 KFLGNLSGDPYTLHTNVVTNGKSDR*QQFHLWFDPTADFHTYSVLWNPQR 150
            +FLGN+SG PYTLHTNV T G  D+ QQFHLWFDPTA+FHTY + WNPQR
Sbjct:  103 EFLGNISGHPYTLHTNVYTKGSGDKEQQFHLWFDPTANFHTYCITWNPQR 152          
BLAST of CV712632 vs. ExPASy Swiss-Prot
Match: XTH18_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 18 OS=Arabidopsis thaliana GN=XTH18 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.923e-18
Identity = 37/50 (74.00%), Postives = 41/50 (82.00%), Query Frame = 1
Query:    1 KFLGNLSGDPYTLHTNVVTNGKSDR*QQFHLWFDPTADFHTYSVLWNPQR 150
            +FLGNLSG PYTLHTNV T G  D+ QQFHLWFDPT +FHTY + WNPQR
Sbjct:  108 EFLGNLSGHPYTLHTNVYTKGSGDKEQQFHLWFDPTVNFHTYCITWNPQR 157          
BLAST of CV712632 vs. ExPASy Swiss-Prot
Match: XTH17_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 17 OS=Arabidopsis thaliana GN=XTH17 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.097e-17
Identity = 36/50 (72.00%), Postives = 41/50 (82.00%), Query Frame = 1
Query:    1 KFLGNLSGDPYTLHTNVVTNGKSDR*QQFHLWFDPTADFHTYSVLWNPQR 150
            +FLGN+SG PYTLHTNV T G  D+ QQFHLWFDPT +FHTY + WNPQR
Sbjct:  108 EFLGNISGHPYTLHTNVYTKGTGDKEQQFHLWFDPTVNFHTYCITWNPQR 157          
BLAST of CV712632 vs. ExPASy Swiss-Prot
Match: XTH21_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 21 OS=Arabidopsis thaliana GN=XTH21 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.191e-17
Identity = 36/48 (75.00%), Postives = 41/48 (85.42%), Query Frame = 1
Query:    1 KFLGNLSGDPYTLHTNVVTNGKSDR*QQFHLWFDPTADFHTYSVLWNP 144
            +FLGN+SGDPY +HTNV T GK DR QQF+LWFDPTA FH YS+LWNP
Sbjct:  106 EFLGNVSGDPYIVHTNVYTQGKGDREQQFYLWFDPTAAFHNYSILWNP 153          
BLAST of CV712632 vs. ExPASy Swiss-Prot
Match: BRU1_SOYBN (Brassinosteroid-regulated protein BRU1 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.191e-17
Identity = 35/49 (71.43%), Postives = 42/49 (85.71%), Query Frame = 1
Query:    1 KFLGNLSGDPYTLHTNVVTNGKSDR*QQFHLWFDPTADFHTYSVLWNPQ 147
            +FLGNLSGDPY LHTN+ T GK +R QQF+LWFDPT +FHTYS++W PQ
Sbjct:  110 EFLGNLSGDPYILHTNIFTQGKGNREQQFYLWFDPTRNFHTYSIIWKPQ 158          
The following BLAST results are available for this feature:
BLAST of CV712632 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
XTH24_ARATH8.114e-2182.00Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH23_ARATH1.384e-2084.00Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH25_ARATH2.361e-2085.42Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH20_ARATH1.295e-1874.00Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH22_ARATH1.692e-1876.00Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH19_ARATH2.886e-1874.00Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH18_ARATH4.923e-1874.00Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH17_ARATH1.097e-1772.00Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH21_ARATH3.191e-1775.00Probable xyloglucan endotransglucosylase/hydrolase... [more]
BRU1_SOYBN3.191e-1771.43Brassinosteroid-regulated protein BRU1 OS=Glycine ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001K19_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001K19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712632 ID=CV712632; Name=CV712632; organism=Citrus sinensis; type=EST; length=150bp
AAATTCTTGGGGAATTTAAGTGGCGATCCTTATACTCTTCATACTAATGT
GGTCACAAATGGCAAAAGTGACAGATAACAACAATTCCACCTCTGGTTTG
ACCCCACTGCTGACTTTCACACCTATTCCGTTCTCTGGAACCCCCAACGT
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