CV712625

Overview
NameCV712625
Unique NameCV712625
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length698
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2679 contig Csv1_Contig2679:313..1008. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712625 vs. ExPASy Swiss-Prot
Match: RS33_ARATH (40S ribosomal protein S3-3 OS=Arabidopsis thaliana GN=RPS3C PE=1 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 2.832e-67
Identity = 125/146 (85.62%), Postives = 137/146 (93.84%), Query Frame = 2
Query:    2 KFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH-PLKEEVYVAPA 436
            KFP++SVELYAEKV NRGLCAIAQAESLRYKLLGGLAVRRACYGVLRF+MESGAKGCEVIVSGKLRA RAKSMKFKDGYM+SSGQP  EYID+AVRHVLLRQGVLG+KVKIML+WD KGKQGP TPLPD+V IH P +++VY+APA
Sbjct:   78 KFPQDSVELYAEKVANRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQGVLGLKVKIMLDWDPKGKQGPMTPLPDVVIIHTPKEDDVYIAPA 223          
BLAST of CV712625 vs. ExPASy Swiss-Prot
Match: RS31_ARATH (40S ribosomal protein S3-1 OS=Arabidopsis thaliana GN=RPS3A PE=2 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 5.342e-66
Identity = 126/150 (84.00%), Postives = 135/150 (90.00%), Query Frame = 2
Query:    2 KFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE-VYVAPATATS 448
            KFP +SVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRF+MESGAKGCEVIVSGKLRA RAKSMKFKDGYM+SSGQP  EYID+AVRHVLLRQGVLGIKVKIML+WD  GK GP TPLPD+V IH  K++ VY APA A +
Sbjct:   78 KFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQGVLGIKVKIMLDWDPTGKSGPKTPLPDVVIIHAPKDDVVYSAPAQAAA 227          
BLAST of CV712625 vs. ExPASy Swiss-Prot
Match: RS32_ARATH (40S ribosomal protein S3-2 OS=Arabidopsis thaliana GN=RPS3B PE=1 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 1.554e-65
Identity = 125/146 (85.62%), Postives = 132/146 (90.41%), Query Frame = 2
Query:    2 KFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH-PLKEEVYVAPA 436
            KFP +SVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRF+MESGAKGCEVIVSGKLRA RAKSMKFKDGYM+SSGQP  EYIDSAVRHVLLRQGVLGIKVK+ML+WD KG  GP TPLPD+V IH P +EE   APA
Sbjct:   78 KFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDSAVRHVLLRQGVLGIKVKVMLDWDPKGISGPKTPLPDVVIIHSPKEEEAIYAPA 223          
BLAST of CV712625 vs. ExPASy Swiss-Prot
Match: RS32_XENLA (40S ribosomal protein S3-B OS=Xenopus laevis GN=rps3-B PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.403e-58
Identity = 117/148 (79.05%), Postives = 123/148 (83.11%), Query Frame = 2
Query:    5 FPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 448
            FPE SVELYAEKV  RGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEV+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AVRHVLLRQGVLGIKVKIML WD  GK GP  PLPD V+I   K+E  + P T  S
Sbjct:   79 FPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDE--IVPTTPIS 224          
BLAST of CV712625 vs. ExPASy Swiss-Prot
Match: RS31_XENLA (40S ribosomal protein S3-A OS=Xenopus laevis GN=rps3-A PE=2 SV=2)

HSP 1 Score: 225.328 bits (573), Expect = 2.403e-58
Identity = 117/148 (79.05%), Postives = 123/148 (83.11%), Query Frame = 2
Query:    5 FPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 448
            FPE SVELYAEKV  RGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEV+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AVRHVLLRQGVLGIKVKIML WD  GK GP  PLPD V+I   K+E  + P T  S
Sbjct:   79 FPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDE--IVPTTPIS 224          
BLAST of CV712625 vs. ExPASy Swiss-Prot
Match: RS3_RAT (40S ribosomal protein S3 OS=Rattus norvegicus GN=Rps3 PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 3.139e-58
Identity = 114/139 (82.01%), Postives = 120/139 (86.33%), Query Frame = 2
Query:    5 FPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 421
            FPE SVELYAEKV  RGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEV+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AVRHVLLRQGVLGIKVKIML WD  GK GP  PLPD V+I   K+E+
Sbjct:   79 FPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEI 217          
BLAST of CV712625 vs. ExPASy Swiss-Prot
Match: RS3_MOUSE (40S ribosomal protein S3 OS=Mus musculus GN=Rps3 PE=1 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 3.139e-58
Identity = 114/139 (82.01%), Postives = 120/139 (86.33%), Query Frame = 2
Query:    5 FPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 421
            FPE SVELYAEKV  RGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEV+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AVRHVLLRQGVLGIKVKIML WD  GK GP  PLPD V+I   K+E+
Sbjct:   79 FPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEI 217          
BLAST of CV712625 vs. ExPASy Swiss-Prot
Match: RS3_PIG (40S ribosomal protein S3 OS=Sus scrofa GN=RPS3 PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 4.100e-58
Identity = 114/139 (82.01%), Postives = 120/139 (86.33%), Query Frame = 2
Query:    5 FPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 421
            FPE SVELYAEKV  RGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEV+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AVRHVLLRQGVLGIKVKIML WD  GK GP  PLPD V+I   K+E+
Sbjct:   79 FPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEI 217          
BLAST of CV712625 vs. ExPASy Swiss-Prot
Match: RS3_ICTPU (40S ribosomal protein S3 OS=Ictalurus punctatus GN=rps3 PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 4.100e-58
Identity = 117/148 (79.05%), Postives = 122/148 (82.43%), Query Frame = 2
Query:    5 FPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 448
            FP  SVELYAEKV  RGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEV+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AVRHVLLRQGVLGIKVKIML WD  GK GP  PLPD V+I   KEE  + P T  S
Sbjct:   79 FPRGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKEE--ILPTTPVS 224          
BLAST of CV712625 vs. ExPASy Swiss-Prot
Match: RS3_HUMAN (40S ribosomal protein S3 OS=Homo sapiens GN=RPS3 PE=1 SV=2)

HSP 1 Score: 224.557 bits (571), Expect = 4.100e-58
Identity = 114/139 (82.01%), Postives = 120/139 (86.33%), Query Frame = 2
Query:    5 FPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 421
            FPE SVELYAEKV  RGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEV+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AVRHVLLRQGVLGIKVKIML WD  GK GP  PLPD V+I   K+E+
Sbjct:   79 FPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEI 217          
The following BLAST results are available for this feature:
BLAST of CV712625 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
RS33_ARATH2.832e-6785.6240S ribosomal protein S3-3 OS=Arabidopsis thaliana... [more]
RS31_ARATH5.342e-6684.0040S ribosomal protein S3-1 OS=Arabidopsis thaliana... [more]
RS32_ARATH1.554e-6585.6240S ribosomal protein S3-2 OS=Arabidopsis thaliana... [more]
RS32_XENLA2.403e-5879.0540S ribosomal protein S3-B OS=Xenopus laevis GN=rp... [more]
RS31_XENLA2.403e-5879.0540S ribosomal protein S3-A OS=Xenopus laevis GN=rp... [more]
RS3_RAT3.139e-5882.0140S ribosomal protein S3 OS=Rattus norvegicus GN=R... [more]
RS3_MOUSE3.139e-5882.0140S ribosomal protein S3 OS=Mus musculus GN=Rps3 P... [more]
RS3_PIG4.100e-5882.0140S ribosomal protein S3 OS=Sus scrofa GN=RPS3 PE=... [more]
RS3_ICTPU4.100e-5879.0540S ribosomal protein S3 OS=Ictalurus punctatus GN... [more]
RS3_HUMAN4.100e-5882.0140S ribosomal protein S3 OS=Homo sapiens GN=RPS3 P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_0001K15_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001K15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712625 ID=CV712625; Name=CV712625; organism=Citrus sinensis; type=EST; length=698bp
CAAGTTTCCAGAGAACAGTGTGGAGCTATATGCTGAGAAAGTTAACAATA
GGGGTCTCTGTGCCATTGCTCAGGCTGAGTCTCTGCGTTACAAGCTTCTT
GGAGGTCTCGCTGTTCGAAGGGCATGCTATGGTGTGCTGAGATTTATCAT
GGAGAGTGGTGCCAAGGGATGTGAGGTTATTGTGAGTGGAAAGCTCCGGG
CTCAACGTGCAAAGTCCATGAAATTTAAAGATGGGTACATGATATCCTCA
GGTCAACCTGTGAATGAATACATCGACTCAGCTGTAAGACATGTTCTTCT
TAGACAGGGTGTGCTTGGTATCAAGGTGAAGATCATGCTTGAATGGGATC
AAAAGGGCAAGCAAGGGCCAACAACACCTTTGCCTGATCTGGTTACCATC
CACCCTCTGAAGGAAGAAGTGTATGTTGCACCAGCGACGGCAACCAGTAT
TGAGCTTCCAGTAGCATAAACCCTGAGTTGAGTTGTGTCCAATGTCTGAT
GTAATGATTTAGTAATAGCTTTATGTTTTCTTTTATCTTTTAATTATCTA
TGGAGGAGCAAGAGAATACTACTGGGTACTGTGCATGATGTTGTCTTGTC
TACAATTTTGGTTATTAGAATATTTGGTTTCAGTTTTGTTCGTTTACTTG
AGCGAAGCTTTGCTAAAATCTTATGCGTAAGCTTCTTTGCTAAAAAAA
back to top