CV712620

Overview
NameCV712620
Unique NameCV712620
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length870
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3907 contig Csv1_Contig3907:7..876. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of CV712620 vs. ExPASy Swiss-Prot
Match: COX3_SOYBN (Cytochrome c oxidase subunit 3 OS=Glycine max GN=COX3 PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 2.236e-57
Identity = 103/117 (88.03%), Postives = 104/117 (88.89%), Query Frame = -2
Query:  510 WAHHAILAGKEKRXXXXXXXXXXXXXVFTGFQGMEYYQAPFTISDSIYGSTFYLATGFHGFHVIIGTLFLIICGIRQYLGHLTKEHHVGFEAAAWYWHFVDVVWLFLFVSIYWWGGI 860
            WAHHAILAGKEKR             VFTGFQGMEYYQAPFTISDSIYGSTF+LATGFHGFHVIIGTLFLIICGIRQYLGHLTKEHHVGFEAAAWYWHFVDVVWLFLFVSIYWWGGI
Sbjct:  149 WAHHAILAGKEKRAVYALVATVSLALVFTGFQGMEYYQAPFTISDSIYGSTFFLATGFHGFHVIIGTLFLIICGIRQYLGHLTKEHHVGFEAAAWYWHFVDVVWLFLFVSIYWWGGI 265          
BLAST of CV712620 vs. ExPASy Swiss-Prot
Match: COX3_ARATH (Cytochrome c oxidase subunit 3 OS=Arabidopsis thaliana GN=COX3 PE=2 SV=2)

HSP 1 Score: 222.631 bits (566), Expect = 2.236e-57
Identity = 103/117 (88.03%), Postives = 104/117 (88.89%), Query Frame = -2
Query:  510 WAHHAILAGKEKRXXXXXXXXXXXXXVFTGFQGMEYYQAPFTISDSIYGSTFYLATGFHGFHVIIGTLFLIICGIRQYLGHLTKEHHVGFEAAAWYWHFVDVVWLFLFVSIYWWGGI 860
            WAHHAILAGKEKR             VFTGFQGMEYYQAPFTISDSIYGSTF+LATGFHGFHVIIGTLFLIICGIRQYLGHLTKEHHVGFEAAAWYWHFVDVVWLFLFVSIYWWGGI
Sbjct:  149 WAHHAILAGKEKRAVYALVATVLLALVFTGFQGMEYYQAPFTISDSIYGSTFFLATGFHGFHVIIGTLFLIICGIRQYLGHLTKEHHVGFEAAAWYWHFVDVVWLFLFVSIYWWGGI 265          
BLAST of CV712620 vs. ExPASy Swiss-Prot
Match: COX3_WHEAT (Cytochrome c oxidase subunit 3 OS=Triticum aestivum GN=COX3 PE=2 SV=2)

HSP 1 Score: 216.853 bits (551), Expect = 1.227e-55
Identity = 99/117 (84.62%), Postives = 103/117 (88.03%), Query Frame = -2
Query:  510 WAHHAILAGKEKRXXXXXXXXXXXXXVFTGFQGMEYYQAPFTISDSIYGSTFYLATGFHGFHVIIGTLFLIICGIRQYLGHLTKEHHVGFEAAAWYWHFVDVVWLFLFVSIYWWGGI 860
            WAHHAILAGKEKR             VFTGFQGMEYYQAPFTISDSIYGSTF+LATGFHGFHVIIGTLFLI+CGIRQYLG +TK+HHVGFEAAAWYWHFVDVVWLFLFVSIYWWGGI
Sbjct:  149 WAHHAILAGKEKRAVYALVATVLLALVFTGFQGMEYYQAPFTISDSIYGSTFFLATGFHGFHVIIGTLFLIVCGIRQYLGQMTKKHHVGFEAAAWYWHFVDVVWLFLFVSIYWWGGI 265          
BLAST of CV712620 vs. ExPASy Swiss-Prot
Match: COX3_OENBE (Cytochrome c oxidase subunit 3 OS=Oenothera bertiana GN=COX3 PE=3 SV=2)

HSP 1 Score: 212.616 bits (540), Expect = 2.314e-54
Identity = 101/117 (86.32%), Postives = 101/117 (86.32%), Query Frame = -2
Query:  510 WAHHAILAGKEKRXXXXXXXXXXXXXVFTGFQGMEYYQAPFTISDSIYGSTFYLATGFHGFHVIIGTLFLIICGIRQYLGHLTKEHHVGFEAAAWYWHFVDVVWLFLFVSIYWWGGI 860
            WAHHAILAGKEKR             VFTGFQGMEYYQAP TISDSIYGSTFYLATGFHGFHVIIGTLF IICGIRQYLGHLTKEHHVGFEAAAWYWHFVDVV LFLFVSIYWWGGI
Sbjct:  149 WAHHAILAGKEKRAVYALVATVSLAIVFTGFQGMEYYQAPPTISDSIYGSTFYLATGFHGFHVIIGTLFSIICGIRQYLGHLTKEHHVGFEAAAWYWHFVDVVRLFLFVSIYWWGGI 265          
BLAST of CV712620 vs. ExPASy Swiss-Prot
Match: COX3_VICFA (Cytochrome c oxidase subunit 3 OS=Vicia faba GN=COX3 PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 8.794e-54
Identity = 99/117 (84.62%), Postives = 101/117 (86.32%), Query Frame = -2
Query:  510 WAHHAILAGKEKRXXXXXXXXXXXXXVFTGFQGMEYYQAPFTISDSIYGSTFYLATGFHGFHVIIGTLFLIICGIRQYLGHLTKEHHVGFEAAAWYWHFVDVVWLFLFVSIYWWGGI 860
            WAHHAILAGKEKR             VFTGFQGMEYYQAPFTISDSIYGSTF+LATGFHGFHVIIGTLFLIICGIRQYLG +TKEHHVGFEAAAWYWHFVDVV LF FVSIYWWGGI
Sbjct:  149 WAHHAILAGKEKRAVYALVATVSLALVFTGFQGMEYYQAPFTISDSIYGSTFFLATGFHGFHVIIGTLFLIICGIRQYLGQMTKEHHVGFEAAAWYWHFVDVVRLFPFVSIYWWGGI 265          
BLAST of CV712620 vs. ExPASy Swiss-Prot
Match: COX3_ORYSI (Cytochrome c oxidase subunit 3 OS=Oryza sativa subsp. indica GN=COX3 PE=3 SV=2)

HSP 1 Score: 206.453 bits (524), Expect = 1.658e-52
Identity = 97/117 (82.91%), Postives = 100/117 (85.47%), Query Frame = -2
Query:  510 WAHHAILAGKEKRXXXXXXXXXXXXXVFTGFQGMEYYQAPFTISDSIYGSTFYLATGFHGFHVIIGTLFLIICGIRQYLGHLTKEHHVGFEAAAWYWHFVDVVWLFLFVSIYWWGGI 860
            WAHHAILAGKEKR             V TGFQGMEYYQAP TISDSIYGSTF+LATGFHGFHVIIGTLFLI+CGIRQYLGHLTK+HHVGFEAAAWYWHFVDVV LF FVSIYWWGGI
Sbjct:  149 WAHHAILAGKEKRAVYALVATVLLALVSTGFQGMEYYQAPSTISDSIYGSTFFLATGFHGFHVIIGTLFLIVCGIRQYLGHLTKKHHVGFEAAAWYWHFVDVVRLFPFVSIYWWGGI 265          
BLAST of CV712620 vs. ExPASy Swiss-Prot
Match: COX3_HELAN (Cytochrome c oxidase subunit 3 OS=Helianthus annuus GN=COX3 PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.658e-52
Identity = 97/117 (82.91%), Postives = 99/117 (84.62%), Query Frame = -2
Query:  510 WAHHAILAGKEKRXXXXXXXXXXXXXVFTGFQGMEYYQAPFTISDSIYGSTFYLATGFHGFHVIIGTLFLIICGIRQYLGHLTKEHHVGFEAAAWYWHFVDVVWLFLFVSIYWWGGI 860
            WAHHAILAGKEKR             VFT FQGMEYYQAP TISDSIYGSTF+LATGFHGFHVIIGTLF I+CGIRQYLGHLTKEHHVGFEAAAWYWHFVDVV LF FVSIYWWGGI
Sbjct:  149 WAHHAILAGKEKRAVYALVATVSLALVFTAFQGMEYYQAPSTISDSIYGSTFFLATGFHGFHVIIGTLFSIVCGIRQYLGHLTKEHHVGFEAAAWYWHFVDVVRLFPFVSIYWWGGI 265          
BLAST of CV712620 vs. ExPASy Swiss-Prot
Match: COX3_MAIZE (Cytochrome c oxidase subunit 3 OS=Zea mays GN=COX3 PE=2 SV=2)

HSP 1 Score: 203.371 bits (516), Expect = 1.404e-51
Identity = 96/116 (82.76%), Postives = 98/116 (84.48%), Query Frame = -2
Query:  513 WAHHAILAGKEKRXXXXXXXXXXXXXVFTGFQGMEYYQAPFTISDSIYGSTFYLATGFHGFHVIIGTLFLIICGIRQYLGHLTKEHHVGFEAAAWYWHFVDVVWLFLFVSIYWWGG 860
            WAHHAILAGKEKR             V TGFQGMEYYQAP TISDSIYGSTF LATGFHGFHVIIGTLFLI+CGIRQYLGHLTK+HHVGFEAAAWYWHFVDVV LF FVSIYWWGG
Sbjct:  149 WAHHAILAGKEKRAVYALVATVLLALVSTGFQGMEYYQAPSTISDSIYGSTFLLATGFHGFHVIIGTLFLIVCGIRQYLGHLTKKHHVGFEAAAWYWHFVDVVRLFPFVSIYWWGG 264          
BLAST of CV712620 vs. ExPASy Swiss-Prot
Match: COX3_AEGCO (Cytochrome c oxidase subunit 3 OS=Aegilops columnaris GN=COX3 PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 5.335e-51
Identity = 95/117 (81.20%), Postives = 99/117 (84.62%), Query Frame = -2
Query:  510 WAHHAILAGKEKRXXXXXXXXXXXXXVFTGFQGMEYYQAPFTISDSIYGSTFYLATGFHGFHVIIGTLFLIICGIRQYLGHLTKEHHVGFEAAAWYWHFVDVVWLFLFVSIYWWGGI 860
            WAHHAILAGKEKR             V TGFQGMEYYQAP TISDSIYGSTF+LATGFHGFHVIIGTLFLI+CGIRQYLG +TK+HHVGFEAAAWYWHFVDVV LF FVSIYWWGGI
Sbjct:  149 WAHHAILAGKEKRAVYALVATVSLALVSTGFQGMEYYQAPSTISDSIYGSTFFLATGFHGFHVIIGTLFLIVCGIRQYLGLMTKKHHVGFEAAAWYWHFVDVVRLFPFVSIYWWGGI 265          
BLAST of CV712620 vs. ExPASy Swiss-Prot
Match: COX3_MARPO (Cytochrome c oxidase subunit 3 OS=Marchantia polymorpha GN=COX3 PE=3 SV=2)

HSP 1 Score: 194.512 bits (493), Expect = 6.522e-49
Identity = 88/116 (75.86%), Postives = 97/116 (83.62%), Query Frame = -2
Query:  513 WAHHAILAGKEKRXXXXXXXXXXXXXVFTGFQGMEYYQAPFTISDSIYGSTFYLATGFHGFHVIIGTLFLIICGIRQYLGHLTKEHHVGFEAAAWYWHFVDVVWLFLFVSIYWWGG 860
            WAHHAILAG +++             VFTGFQG+EY +APFTISD IYGSTF+LATGFHGFHVIIGT+FLIICGIRQYLGH T +HH GFEAAA+YWHFVDVVWLFLFVSIYWWGG
Sbjct:  149 WAHHAILAGLKQQAVYALIATVFLALVFTGFQGIEYIEAPFTISDGIYGSTFFLATGFHGFHVIIGTIFLIICGIRQYLGHFTPKHHFGFEAAAFYWHFVDVVWLFLFVSIYWWGG 264          
The following BLAST results are available for this feature:
BLAST of CV712620 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
COX3_SOYBN2.236e-5788.03Cytochrome c oxidase subunit 3 OS=Glycine max GN=C... [more]
COX3_ARATH2.236e-5788.03Cytochrome c oxidase subunit 3 OS=Arabidopsis thal... [more]
COX3_WHEAT1.227e-5584.62Cytochrome c oxidase subunit 3 OS=Triticum aestivu... [more]
COX3_OENBE2.314e-5486.32Cytochrome c oxidase subunit 3 OS=Oenothera bertia... [more]
COX3_VICFA8.794e-5484.62Cytochrome c oxidase subunit 3 OS=Vicia faba GN=CO... [more]
COX3_ORYSI1.658e-5282.91Cytochrome c oxidase subunit 3 OS=Oryza sativa sub... [more]
COX3_HELAN1.658e-5282.91Cytochrome c oxidase subunit 3 OS=Helianthus annuu... [more]
COX3_MAIZE1.404e-5182.76Cytochrome c oxidase subunit 3 OS=Zea mays GN=COX3... [more]
COX3_AEGCO5.335e-5181.20Cytochrome c oxidase subunit 3 OS=Aegilops columna... [more]
COX3_MARPO6.522e-4975.86Cytochrome c oxidase subunit 3 OS=Marchantia polym... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001K13_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001K13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712620 ID=CV712620; Name=CV712620; organism=Citrus sinensis; type=EST; length=870bp
TTCTAACTGAAGCTGCTCACGTTTTTAAGCAGGGTTAACTACTGGTCTTG
GAAAGCCAGGCAGCTCAGGCAGTTCGGCTTGAAGACAAGACTCGTTCCGT
TCCGTACTTGACTTAGGAGCTAGTTTAGTTTTAGTACTCGCCCCTATCTC
TAAAGGCCGATATCTTTCGTAGCAGCCAAGGATGAGTTCAGTTCGATCCA
TTAGGTTCTTCGATTTGTTCAGAAAAGAAACGAGAGACAAGAAAACATCT
TTGATTACGATTAAAAGGAACAATCTCAAATAGATCAAGATCCAATTTCG
AGTCATTTCTTGGTGAACATAATCTGCCATAATCTCTTCGATCCCTTCAT
TGATGTGCCAGAATAAAGAGAGATTTAGTAGGAAAGTGGAAGAGACTTTT
TTGTATATGATAATCAAAGGGAGTAGTAAAGCTGCAGTAATTCTTTGGAA
AAGCCCGATTCTCTTTGTCTTCGAGCTTTCATTCCTCAATCCACTCTTTC
CTTCCTTCATATACCTCCCCACCAATAGATAGAGACAAATAGGAATAACC
AAACCACGTCTACAAAATGCCAGTACCATGCAGCTGCTTCAAAGCCAACG
TGATGCTCCTTGGTCAGATGACCAAGATATTGGCGAATACCACATATGAT
CAAAAAAAGAGTACCTATAATCACATGAAAACCATGAAAGCCAGTTGCTA
AGTAAAAGGTAGAACCATAAATACTATCCGAAATAGTGAAGGGTGCTTGA
TAATATTCCATTCCTTGAAAGCCGGTGAATACTAGAGCCAGTAAAACGGT
AGCTACTAGAGCATAAACTGCTCGTTTTTCCTTCCCCGCGAGTATAGCAT
GATGAGCCCAGTTACGGCAG
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