CV712617

Overview
NameCV712617
Unique NameCV712617
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length716
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV712617_ssr478 microsatellite CV712617_ssr478:478..489. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2934 contig Csv1_Contig2934:1..716. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712617 vs. ExPASy Swiss-Prot
Match: NP1L1_PONAB (Nucleosome assembly protein 1-like 1 OS=Pongo abelii GN=NAP1L1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.635e-17
Identity = 59/161 (36.65%), Postives = 78/161 (48.45%), Query Frame = 1
Query:    1 LKFLKDIK--WFRIDDPKGFKLEFYFDPNPYFKNTVLTKTYHMIDE---------DEPILEKAIGTEIEWYPG-XXXXXXXXXXXXXXXXXXXXPITKTEECESFFNFFNPPQVPXXXXXXXXXXXXXLQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQ 447
            LK LKDIK  +     P  F LEF+F+PN YF N VLTKTY M  E         D P +    G +I+W  G                      +TKT   +SFFNFF PP+VP              +  +  D++IG  +R++IIP +V +FTGEAI+
Sbjct:  193 LKHLKDIKVKFSGAGQPMSFVLEFHFEPNEYFTNEVLTKTYRMRSEPDDSDPFSFDGPEIMGCTGCQIDWKKGKNVTLKTIKKKQKHKGRGTVRTVTKTVSNDSFFNFFAPPEVP-----ESGDLDDDAEAILAADFEIGHFLRERIIPRSVLYFTGEAIE 348          
BLAST of CV712617 vs. ExPASy Swiss-Prot
Match: NP1L1_MOUSE (Nucleosome assembly protein 1-like 1 OS=Mus musculus GN=Nap1l1 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.635e-17
Identity = 60/161 (37.27%), Postives = 78/161 (48.45%), Query Frame = 1
Query:    1 LKFLKDIKWFRID--DPKGFKLEFYFDPNPYFKNTVLTKTYHMIDE---------DEPILEKAIGTEIEWYPG-XXXXXXXXXXXXXXXXXXXXPITKTEECESFFNFFNPPQVPXXXXXXXXXXXXXLQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQ 447
            LK LKDIK    D   P  F LEF+F+PN YF N VLTKTY M  E         D P +    G +I+W  G                      +TKT   +SFFNFF PP+VP              +  +  D++IG  +R++IIP +V +FTGEAI+
Sbjct:  193 LKHLKDIKVKFSDAGQPMSFVLEFHFEPNDYFTNEVLTKTYRMRSEPDDSDPFSFDGPEIMGCTGCQIDWKKGKNVTLKTIKKKQKHKGRGTVRTVTKTVSNDSFFNFFAPPEVP-----ENGDLDDDAEAILAADFEIGHFLRERIIPRSVLYFTGEAIE 348          
BLAST of CV712617 vs. ExPASy Swiss-Prot
Match: NP1L1_HUMAN (Nucleosome assembly protein 1-like 1 OS=Homo sapiens GN=NAP1L1 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.635e-17
Identity = 60/161 (37.27%), Postives = 78/161 (48.45%), Query Frame = 1
Query:    1 LKFLKDIKWFRID--DPKGFKLEFYFDPNPYFKNTVLTKTYHMIDE---------DEPILEKAIGTEIEWYPG-XXXXXXXXXXXXXXXXXXXXPITKTEECESFFNFFNPPQVPXXXXXXXXXXXXXLQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQ 447
            LK LKDIK    D   P  F LEF+F+PN YF N VLTKTY M  E         D P +    G +I+W  G                      +TKT   +SFFNFF PP+VP              +  +  D++IG  +R++IIP +V +FTGEAI+
Sbjct:  193 LKHLKDIKVKFSDAGQPMSFVLEFHFEPNEYFTNEVLTKTYRMRSEPDDSDPFSFDGPEIMGCTGCQIDWKKGKNVTLKTIKKKQKHKGRGTVRTVTKTVSNDSFFNFFAPPEVP-----ESGDLDDDAEAILAADFEIGHFLRERIIPRSVLYFTGEAIE 348          
BLAST of CV712617 vs. ExPASy Swiss-Prot
Match: NP1L1_BOVIN (Nucleosome assembly protein 1-like 1 OS=Bos taurus GN=NAP1L1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.635e-17
Identity = 60/161 (37.27%), Postives = 78/161 (48.45%), Query Frame = 1
Query:    1 LKFLKDIKWFRID--DPKGFKLEFYFDPNPYFKNTVLTKTYHMIDE---------DEPILEKAIGTEIEWYPG-XXXXXXXXXXXXXXXXXXXXPITKTEECESFFNFFNPPQVPXXXXXXXXXXXXXLQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQ 447
            LK LKDIK    D   P  F LEF+F+PN YF N VLTKTY M  E         D P +    G +I+W  G                      +TKT   +SFFNFF PP+VP              +  +  D++IG  +R++IIP +V +FTGEAI+
Sbjct:  193 LKHLKDIKVKFSDAGQPMSFVLEFHFEPNEYFTNEVLTKTYRMRSEPDDSDPFSFDGPEIMGCTGCQIDWKKGKNVTLKTIKKKQKHKGRGTVRTVTKTVSNDSFFNFFAPPEVPESGDLDDDS-----EAILAADFEIGHFLRERIIPRSVLYFTGEAIE 348          
BLAST of CV712617 vs. ExPASy Swiss-Prot
Match: YCO6_SCHPO (Putative nucleosome assembly protein C364.06 OS=Schizosaccharomyces pombe GN=SPCC364.06 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.136e-17
Identity = 54/153 (35.29%), Postives = 74/153 (48.37%), Query Frame = 1
Query:    1 LKFLKDIKWFRIDDPKGFKLEFYFDPNPYFKNTVLTKTYHMIDEDEP----ILEKAIGTEIEWYPGXXXXXXXXXXXXXXXXXXXXPITKTE-ECESFFNFFNPPQVPXXXXXXXXXXXXXLQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAI 444
            L  L DI+   ++ P GFKLEF F  NP+F N +LTKTY+ ++E  P    + + A G +++W                        + K     +SFFNFFNPP  P             L   +E DY IG   ++K+IP AV WFTGEA+
Sbjct:  190 LSHLVDIRISYMEKP-GFKLEFEFAENPFFTNKILTKTYYYMEESGPSNVFLYDHAEGDKVDWKENADLTVRTVTKKQRNKNTKQTRVVKVSVPRDSFFNFFNPPTPP--SEEDEESESPELDELLELDYQIGEDFKEKLIPRAVEWFTGEAL 339          
BLAST of CV712617 vs. ExPASy Swiss-Prot
Match: NPL1A_XENLA (Nucleosome assembly protein 1-like 1-A OS=Xenopus laevis GN=nap1l1-A PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.643e-17
Identity = 60/161 (37.27%), Postives = 77/161 (47.83%), Query Frame = 1
Query:    1 LKFLKDIKWFRID--DPKGFKLEFYFDPNPYFKNTVLTKTYHMIDE---------DEPILEKAIGTEIEWYPG-XXXXXXXXXXXXXXXXXXXXPITKTEECESFFNFFNPPQVPXXXXXXXXXXXXXLQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQ 447
            LK LKDIK    D   P  F LEFYF+PN +F N VLTKTY M  E         D P +    G  I+W  G                      +TKT   +SFFNFF PP+VP              +  +  D++IG  +R++IIP +V +FTGEAI+
Sbjct:  193 LKHLKDIKVKFSDAGQPMSFTLEFYFEPNEFFTNEVLTKTYKMRSEPDESDPFSFDGPEIMGCTGCLIDWKKGKNVTLKTIKKKQKHKGRGTVRTVTKTVPNDSFFNFFTPPEVP-----ENGELDDDAEAILTADFEIGHFLRERIIPRSVLYFTGEAIE 348          
BLAST of CV712617 vs. ExPASy Swiss-Prot
Match: NP1L1_RAT (Nucleosome assembly protein 1-like 1 OS=Rattus norvegicus GN=Nap1l1 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.758e-17
Identity = 60/161 (37.27%), Postives = 77/161 (47.83%), Query Frame = 1
Query:    1 LKFLKDIKWFRID--DPKGFKLEFYFDPNPYFKNTVLTKTYHMIDE---------DEPILEKAIGTEIEWYPG-XXXXXXXXXXXXXXXXXXXXPITKTEECESFFNFFNPPQVPXXXXXXXXXXXXXLQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQ 447
            LK LKDIK    D   P  F LEF+F+PN YF N VLTKTY M  E         D P +    G +I+W  G                      +TKT    SFFNFF PP+VP              +  +  D++IG  +R++IIP +V +FTGEAI+
Sbjct:  192 LKHLKDIKVKFSDAGQPMSFILEFHFEPNEYFTNEVLTKTYRMRSEPDDSDPFSFDGPEIMGCTGCQIDWKKGKNVTLKTIKKKQKHKGRGTVRTVTKTVSKTSFFNFFAPPEVP-----ENGDLDDDXEAILAADFEIGHFLRERIIPRSVLYFTGEAIE 347          
BLAST of CV712617 vs. ExPASy Swiss-Prot
Match: NP1L1_XENTR (Nucleosome assembly protein 1-like 1 OS=Xenopus tropicalis GN=nap1l1 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.214e-17
Identity = 58/161 (36.02%), Postives = 78/161 (48.45%), Query Frame = 1
Query:    1 LKFLKDIK--WFRIDDPKGFKLEFYFDPNPYFKNTVLTKTYHMIDE---------DEPILEKAIGTEIEWYPG-XXXXXXXXXXXXXXXXXXXXPITKTEECESFFNFFNPPQVPXXXXXXXXXXXXXLQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQ 447
            LK LKDIK  +     P  F LEF+F+PN +F N VLTKTY M  E         D P +    G  I+W  G                      +TKT   +SFFNFF+PP+VP              +  +  D++IG  +R++IIP +V +FTGEAI+
Sbjct:  194 LKHLKDIKVKFSEAGQPMSFTLEFHFEPNDFFTNEVLTKTYKMRSEPDESDPFSFDGPEIMGCTGCLIDWKKGKNVTLKTIKKKQKHKGRGTVRTVTKTVPNDSFFNFFSPPEVP-----ENGELDDDAEAILTADFEIGHFLRERIIPRSVLYFTGEAIE 349          
BLAST of CV712617 vs. ExPASy Swiss-Prot
Match: NPL1B_XENLA (Nucleosome assembly protein 1-like 1-B OS=Xenopus laevis GN=nap1l1-B PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.384e-16
Identity = 57/161 (35.40%), Postives = 78/161 (48.45%), Query Frame = 1
Query:    1 LKFLKDIK--WFRIDDPKGFKLEFYFDPNPYFKNTVLTKTYHMIDE---------DEPILEKAIGTEIEWYPG-XXXXXXXXXXXXXXXXXXXXPITKTEECESFFNFFNPPQVPXXXXXXXXXXXXXLQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQ 447
            LK LKDIK  +     P  F LEF+F+PN +F N +LTKTY M  E         D P +    G  I+W  G                      +TKT   +SFFNFF+PP+VP              +  +  D++IG  +R++IIP +V +FTGEAI+
Sbjct:  194 LKHLKDIKVKFSEAGQPMNFMLEFHFEPNEFFTNELLTKTYKMRSEPDESDPFSFDGPEIMGCTGCLIDWKKGKNVTLKTIKKKQKHKGRGTVRTVTKTVPNDSFFNFFSPPEVP-----ENGELDDDAEAILTADFEIGHFLRERIIPRSVLYFTGEAIE 349          
BLAST of CV712617 vs. ExPASy Swiss-Prot
Match: NP1L4_HUMAN (Nucleosome assembly protein 1-like 4 OS=Homo sapiens GN=NAP1L4 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.921e-15
Identity = 58/161 (36.02%), Postives = 74/161 (45.96%), Query Frame = 1
Query:    1 LKFLKDIKWFRID--DPKGFKLEFYFDPNPYFKNTVLTKTYHMIDEDE---------PILEKAIGTEIEWYPG-XXXXXXXXXXXXXXXXXXXXPITKTEECESFFNFFNPPQVPXXXXXXXXXXXXXLQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQ 447
            LK L+DIK    D   P  F LEF+F+PN YF N+VLTKTY M  E +         P +    G  I+W  G                      ITK    ESFFNFFNP +               L +    D++IG   R++I+P AV +FTGEAI+
Sbjct:  185 LKHLQDIKVKFSDPGQPMSFVLEFHFEPNDYFTNSVLTKTYKMKSEPDKADPFSFEGPEIVDCDGCTIDWKKGKNVTVKTIKKKQKHKGRGTVRTITKQVPNESFFNFFNPLKASGDGESLDEDSEFTLAS----DFEIGHFFRERIVPRAVLYFTGEAIE 341          
The following BLAST results are available for this feature:
BLAST of CV712617 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
NP1L1_PONAB1.635e-1736.65Nucleosome assembly protein 1-like 1 OS=Pongo abel... [more]
NP1L1_MOUSE1.635e-1737.27Nucleosome assembly protein 1-like 1 OS=Mus muscul... [more]
NP1L1_HUMAN1.635e-1737.27Nucleosome assembly protein 1-like 1 OS=Homo sapie... [more]
NP1L1_BOVIN1.635e-1737.27Nucleosome assembly protein 1-like 1 OS=Bos taurus... [more]
YCO6_SCHPO2.136e-1735.29Putative nucleosome assembly protein C364.06 OS=Sc... [more]
NPL1A_XENLA3.643e-1737.27Nucleosome assembly protein 1-like 1-A OS=Xenopus ... [more]
NP1L1_RAT4.758e-1737.27Nucleosome assembly protein 1-like 1 OS=Rattus nor... [more]
NP1L1_XENTR6.214e-1736.02Nucleosome assembly protein 1-like 1 OS=Xenopus tr... [more]
NPL1B_XENLA1.384e-1635.40Nucleosome assembly protein 1-like 1-B OS=Xenopus ... [more]
NP1L4_HUMAN9.921e-1536.02Nucleosome assembly protein 1-like 4 OS=Homo sapie... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001K11_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001K11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712617 ID=CV712617; Name=CV712617; organism=Citrus sinensis; type=EST; length=716bp
CTCAAGTTTCTCAAAGACATTAAGTGGTTTAGGATTGATGATCCAAAGGG
ATTCAAGCTTGAATTCTACTTTGACCCCAATCCATACTTCAAGAACACTG
TCTTGACAAAGACCTATCACATGATTGATGAAGATGAGCCTATTCTTGAG
AAAGCTATAGGGACGGAGATTGAATGGTATCCAGGGAAATGCTTGACACA
GAAGCTCCTTAAGAAGAAGCCAAAGAAGGGATCAAAGAATGCTAAGCCAA
TTACTAAAACTGAAGAATGTGAAAGTTTTTTCAACTTTTTCAATCCACCT
CAAGTCCCTGAAGATGATGAAGACATTGATGAAGATACTGCTGAGGAGCT
TCAAAATCAAATGGAACAAGATTACGATATTGGATCAACAATTAGAGACA
AGATTATCCCCCATGCTGTTTCATGGTTTACTGGGGAAGCTATTCAGGAG
GAAGAGATTGAGTTGGATGATGATGAAGATGATGATGATATTGATGAGGA
TGAAGACGACGAGGGAGATGATGACGAAGATGAGGATGAAGATGACGAGG
AGGATGAGGAGGATGATGAAGGCAAGACCAAAAAGAAGTCATCAGCTGGG
AGCAAGAAGAGTGGAAGACAACAAGCTGGGGATGCTCAGCAGGGTGAAAG
GCCTCCAGAATGCAAGCAGCAGTAGATTTTGGTTTGGATTGGCATAGCCT
AGTATATGTTGTGTGG
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