CX043354
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX043354 vs. ExPASy Swiss-Prot
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe GN=SPBC23E6.01c PE=1 SV=2) HSP 1 Score: 117.857 bits (294), Expect = 6.665e-26 Identity = 67/153 (43.79%), Postives = 84/153 (54.90%), Query Frame = -1 Query: 357 RFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK--------TVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPN 791 RF DE++Q A+ EM G C RP+R+G AT K V P Y +Q D N+TVFVG L V++E L+ LF +G++V+VKIP GK CGFVQF +R AE A+ L G LG IRLSWGR+ N A P N Sbjct: 234 RFTDENDQKSALAEMQGQICGDRPIRVGLATPKSKAHVFSPVNVVPVSMPPVGFYSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQGYPLGNSRIRLSWGRN-QNPIAAPALN 385
BLAST of CX043354 vs. ExPASy Swiss-Prot
Match: NAM8_YEAST (Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 PE=1 SV=2) HSP 1 Score: 106.686 bits (265), Expect = 1.536e-22 Identity = 67/207 (32.37%), Postives = 98/207 (47.34%), Query Frame = -1 Query: 339 RFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKT-VSGQQQYPKAS----------------------------YQNSQVAQ------------SDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSN---------------KQAQPDPNQWNAGY 791 +F + EQ A++EM GVF + R +++GP + ++ VSG Y ++S ++ + ++Q DPNNTTVF+G L S+VT++ LR F +G +V+VKIP GK CGFVQ+ DR AE A+ + G + +RLSWGRS +Q QP Q N GY Sbjct: 211 KFTNSDEQQLALSEMQGVFLNGRAIKVGPTSGQQQHVSGNNDYNRSSSSLNNENVDSRFLSKGQSFLSNGNNNMGFKRNHMSQFIYPVQQQPSLNHFTDPNNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKCCGFVQYVDRLSAEAAIAGMQGFPIANSRVRLSWGRSAKQTALLQQAMLSNSLQVQQQQPGLQQPNYGY 417
BLAST of CX043354 vs. ExPASy Swiss-Prot
Match: CSX1_SCHPO (RNA-binding post-transcriptional regulator csx1 OS=Schizosaccharomyces pombe GN=csx1 PE=1 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 4.943e-21 Identity = 55/140 (39.29%), Postives = 80/140 (57.14%), Query Frame = -1 Query: 390 RFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVS----GQQQYPKASYQNSQVAQS--DDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRS 791 RF E EQ A+ M G C RP+RI A+ K S S N Q Q DP NTTVFVG L S ++++ L+ F +G+++++KIP GK CGFVQ++++S AE+A+ + G +G +IRL+WG + Sbjct: 230 RFSSEKEQQHALMHMQGYLCQGRPLRISVASPKSRASIAADSALGIVPTSTSNRQPNQDLCSMDPLNTTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCGFVQYSEKSAAEKAINTMQGALVGTSHIRLAWGHN 369
BLAST of CX043354 vs. ExPASy Swiss-Prot
Match: NGR1_YEAST (Negative growth regulatory protein NGR1 OS=Saccharomyces cerevisiae GN=NGR1 PE=1 SV=2) HSP 1 Score: 90.5077 bits (223), Expect = 1.139e-17 Identity = 68/216 (31.48%), Postives = 95/216 (43.98%), Query Frame = -1 Query: 321 RFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV-------SGQQQYPKASYQ----------------------------------------------NSQVAQS------DDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPNQWNAGYYGYAQG 791 RFGDE E+ RA+ EM+G + R +R+ AT + + QQQ + +Q N +V S + DP NTTVFVG L T+ LR LF +G +++V+IP GK CGFV+F R AE +++ L G +GG IRLSWGR PS+ A+ + A Y + G Sbjct: 240 RFGDEDERRRALIEMSGKWFQGRALRVAYATPRNNMMLQLQEQQQQQQQLQQQHQQLDQEDNNGPLLIKTANNLIQNNSNMLPLNALHNAPPMHLNEGGISNMRVNDSLPSNTYNTDPTNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRIPNGKNCGFVKFEKRIDAEASIQGLQGFIVGGSPIRLSWGR-PSSSNAKTNSTIMGASQYMSSNG 454
BLAST of CX043354 vs. ExPASy Swiss-Prot
Match: TIA1_MOUSE (Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.441e-12 Identity = 49/167 (29.34%), Postives = 83/167 (49.70%), Query Frame = -1 Query: 309 AMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDD------PNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR------SPSNKQAQ----PDPNQWNAGYYGYAQGYENY 761 A+ +M G + R +R AT K PK++Y+++ S D+ PNN TV+ G + S +T++ +R+ FS +GQ++ +++ K FV+F+ A A+ +NGT + G ++ WG+ +P +Q Q P QW +YG AQ Y Sbjct: 163 AIQQMGGQWLGGRQIRTNWATRKPPA------PKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFSSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQIGYPPTYGQWGQ-WYGNAQQIGQY 322
BLAST of CX043354 vs. ExPASy Swiss-Prot
Match: TIAR_MOUSE (Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 4.194e-12 Identity = 46/165 (27.88%), Postives = 77/165 (46.67%), Query Frame = -1 Query: 309 FGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR-SP--SNKQAQPDPNQWN--AGYYGYAQGYENY 788 F ++ + A+ M G + R +R AT K Q + + P N TV+ G + S +TD+ +R+ FS +GQ++ +++ K FV+F+ A A+ +NGT + G ++ WG+ SP + Q D +QW + YG Q Y Y Sbjct: 162 FYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQVDYSQWGQWSQVYGNPQQYGQY 326
BLAST of CX043354 vs. ExPASy Swiss-Prot
Match: TIAR_HUMAN (Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 5.477e-12 Identity = 46/165 (27.88%), Postives = 77/165 (46.67%), Query Frame = -1 Query: 309 FGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR-SP--SNKQAQPDPNQWN--AGYYGYAQGYENY 788 F ++ + A+ M G + R +R AT K Q + + P N TV+ G + S +TD+ +R+ FS +GQ++ +++ K FV+F+ A A+ +NGT + G ++ WG+ SP + Q D +QW + YG Q Y Y Sbjct: 145 FYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQVDYSQWGQWSQVYGNPQQYGQY 309
BLAST of CX043354 vs. ExPASy Swiss-Prot
Match: YBKC_SCHPO (Uncharacterized RNA-binding protein C1289.12 OS=Schizosaccharomyces pombe GN=SPBC1289.12 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 9.343e-12 Identity = 43/134 (32.09%), Postives = 65/134 (48.51%), Query Frame = -1 Query: 384 DESEQLRAMTEMNGVFCSTRPMRIGPA-TNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPS 782 +ES+ A EM G FC R + + ++K T + Y Q DPNNT V+V L +T + LR F +G++++ ++ G + FA R AE+A+ +N L G I+LSW R PS Sbjct: 121 NESDIQNAQVEMQGAFCLKRSILVHSVKSDKNTYLSSPGF----YGTPQPLNQFTDPNNTAVYVHQLPENITTQELRSYFLHFGEILYTQV--NNNSGRIVFAQRYFAEQAINEMNNFPLHGVRIQLSWARPPS 248
BLAST of CX043354 vs. ExPASy Swiss-Prot
Match: TIA1_HUMAN (Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3) HSP 1 Score: 70.4774 bits (171), Expect = 1.220e-11 Identity = 49/167 (29.34%), Postives = 83/167 (49.70%), Query Frame = -1 Query: 309 AMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDD------PNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGR------SPSNKQAQ---PDP-NQWNAGYYGYAQGYENY 761 A+ +M G + R +R AT K PK++Y+++ S D+ P+N TV+ G + S +T++ +R+ FS +GQ++ +++ K FV+F A A+ +NGT + G ++ WG+ +P +Q Q P P QW +YG AQ Y Sbjct: 163 AIQQMGGQWLGGRQIRTNWATRKPPA------PKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQIGYPQPYGQWGQ-WYGNAQQIGQY 322 The following BLAST results are available for this feature:
BLAST of CX043354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 9
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX043354 ID=CX043354; Name=CX043354; organism=Citrus sinensis; type=EST; length=791bpback to top |