CV712582

Overview
NameCV712582
Unique NameCV712582
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length726
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712582 vs. ExPASy Swiss-Prot
Match: AP1G1_MOUSE (AP-1 complex subunit gamma-1 OS=Mus musculus GN=Ap1g1 PE=1 SV=3)

HSP 1 Score: 166.007 bits (419), Expect = 1.839e-40
Identity = 78/188 (41.49%), Postives = 132/188 (70.21%), Query Frame = 2
Query:   11 EKFSPDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDLHGYTVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNNGGVLNIEDPITVTESDAVDVVEIAIKHHSSDITTKAMAMVALLKLSSRFPSCSERIRDIIVQNKGSLVLELQQRSIEFNSIVEKHQNIRSTLVERMPVLDEATFSG 574
            EK++P K W+ID +++VL+ AG++V+D+    LI +I+N+ ++H YTV+ LY+A+     Q+ LV+VA WCIGEYGD+LV+  G    E+PI VTE + +D++E  +  + S   T+  A+ A++KLS+RF     RI+ ++     S+ +ELQQR++E+N++ +K+ ++RS L+ERMPV+++ T +G
Sbjct:  409 EKYAPSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVS--GQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTCTVNRIKKVVSIYGSSIDVELQQRAVEYNALFKKYDHMRSALLERMPVMEKVTTNG 594          
BLAST of CV712582 vs. ExPASy Swiss-Prot
Match: AP1G1_HUMAN (AP-1 complex subunit gamma-1 OS=Homo sapiens GN=AP1G1 PE=1 SV=5)

HSP 1 Score: 166.007 bits (419), Expect = 1.839e-40
Identity = 78/188 (41.49%), Postives = 132/188 (70.21%), Query Frame = 2
Query:   11 EKFSPDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDLHGYTVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNNGGVLNIEDPITVTESDAVDVVEIAIKHHSSDITTKAMAMVALLKLSSRFPSCSERIRDIIVQNKGSLVLELQQRSIEFNSIVEKHQNIRSTLVERMPVLDEATFSG 574
            EK++P K W+ID +++VL+ AG++V+D+    LI +I+N+ ++H YTV+ LY+A+     Q+ LV+VA WCIGEYGD+LV+  G    E+PI VTE + +D++E  +  + S   T+  A+ A++KLS+RF     RI+ ++     S+ +ELQQR++E+N++ +K+ ++RS L+ERMPV+++ T +G
Sbjct:  409 EKYAPSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVS--GQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTCTVNRIKKVVSIYGSSIDVELQQRAVEYNALFKKYDHMRSALLERMPVMEKVTTNG 594          
BLAST of CV712582 vs. ExPASy Swiss-Prot
Match: AP1G1_PONAB (AP-1 complex subunit gamma-1 OS=Pongo abelii GN=AP1G1 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.097e-40
Identity = 78/188 (41.49%), Postives = 131/188 (69.68%), Query Frame = 2
Query:   11 EKFSPDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDLHGYTVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNNGGVLNIEDPITVTESDAVDVVEIAIKHHSSDITTKAMAMVALLKLSSRFPSCSERIRDIIVQNKGSLVLELQQRSIEFNSIVEKHQNIRSTLVERMPVLDEATFSG 574
            EK++P K W+ID +++VL+ AG++V+D+    LI +I+N+ ++H YTV+ LY+A+     Q+ LV+VA WCIGEYGD+LV+  G    E PI VTE + +D++E  +  + S   T+  A+ A++KLS+RF     RI+ ++     S+ +ELQQR++E+N++ +K+ ++RS L+ERMPV+++ T +G
Sbjct:  409 EKYAPSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVS--GQCEEEGPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTCTVNRIKKVVSIYGSSIDVELQQRAVEYNALFKKYDHMRSALLERMPVMEKVTTNG 594          
BLAST of CV712582 vs. ExPASy Swiss-Prot
Match: AP1G2_MOUSE (AP-1 complex subunit gamma-like 2 OS=Mus musculus GN=Ap1g2 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.276e-33
Identity = 72/182 (39.56%), Postives = 117/182 (64.29%), Query Frame = 2
Query:   11 EKFSPDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDLHGYTVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNNGGVLNIEDPITVTESDAVDVVEIAIKHHSSDITTKAMAMVALLKLSSRFPSCSERIRDIIVQNKGSLVLELQQRSIEFNSIVEKHQNIRSTLVERMPVLD 556
            E+F+P K W+ID +L VL+ AG  V+D+    L  +I  A +LH Y+VR LY A+   I Q+ LV+VA WCIGEYGD+L+   G     +P  V E D + ++E  ++ H S   T+  A+ AL+KLS+R    + RIR ++      + LELQQR++E+N++ +K+ ++R+ ++E+MP+++
Sbjct:  410 ERFAPSKRWHIDTILHVLTTAGAHVRDDAVANLTQLIGEAEELHTYSVRRLYSALAEDISQQPLVQVAAWCIGEYGDLLLE--GNCEETEPFQVEEEDVLALLEKVLQSHMSLPATRGYAITALMKLSTRLRGDNNRIRQVVSIYGSCVDLELQQRAVEYNTLFQKYDHMRAAILEKMPLVE 589          
BLAST of CV712582 vs. ExPASy Swiss-Prot
Match: AP1G2_HUMAN (AP-1 complex subunit gamma-like 2 OS=Homo sapiens GN=AP1G2 PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.274e-33
Identity = 70/182 (38.46%), Postives = 117/182 (64.29%), Query Frame = 2
Query:   11 EKFSPDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDLHGYTVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNNGGVLNIEDPITVTESDAVDVVEIAIKHHSSDITTKAMAMVALLKLSSRFPSCSERIRDIIVQNKGSLVLELQQRSIEFNSIVEKHQNIRSTLVERMPVLD 556
            E+F+P K W+ID +L VL+ AG  V+D+    L  +I  A +LH Y+VR LY A+   I Q+ LV+VA WCIGEYGD+L+   G     +P+ V E + + ++E  ++ H S   T+  A+ AL+KLS+R    + RIR ++      L +ELQQR++E++++  K+ ++R+ ++E+MP+++
Sbjct:  410 ERFAPTKRWHIDTILHVLTTAGTHVRDDAVANLTQLIGGAQELHAYSVRRLYNALAEDISQQPLVQVAAWCIGEYGDLLL--AGNCEEIEPLQVDEEEVLALLEKVLQSHMSLPATRGYALTALMKLSTRLCGDNNRIRQVVSIYGSCLDVELQQRAVEYDTLFRKYDHMRAAILEKMPLVE 589          
BLAST of CV712582 vs. ExPASy Swiss-Prot
Match: AP1G_DICDI (AP-1 complex subunit gamma OS=Dictyostelium discoideum GN=ap1g1 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.011e-30
Identity = 69/189 (36.51%), Postives = 125/189 (66.14%), Query Frame = 2
Query:    5 MVEKFSPDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDLHGYTVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNNGGVLNIED---PITVTESDAVDVVEIAIKHHSSDITTKAMAMVALLKLSSRFPSCS-ERIRDIIVQNKGSLVLELQQRSIEFNSIVEKHQNIRSTLVERMPVLDE 559
            + EK++P+K W ID +L+V+S AGNF+ DEV   LI +IS+  +L  Y V+ LY A++  I Q+ L +V +WCIGEYGD+LV +   L  ++    + V+E   +D++++  +H ++   T+  ++ +L KLSSRF   S +RI+ +I   K ++ LELQQR+ E++++ +  +  ++++++RMP +++
Sbjct:  405 VTEKYAPNKRWQIDTILRVMSIAGNFIPDEVPSNLIQLISSTPELSSYAVQKLYLALKQDITQQPLTQVGLWCIGEYGDLLVADKSQLPKDEDGLSLNVSEQAVIDIIDLIFRHATTTQATRQYSLTSLAKLSSRFSQSSLQRIKTMIDNYKQNINLELQQRACEYSTLFDFDK--KASILDRMPPIEK 591          
BLAST of CV712582 vs. ExPASy Swiss-Prot
Match: AP1G1_USTMA (AP-1 complex subunit gamma-1 OS=Ustilago maydis GN=APL4 PE=3 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 4.397e-26
Identity = 68/184 (36.96%), Postives = 106/184 (57.61%), Query Frame = 2
Query:   11 EKFSPDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDLHGYTVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNNGGVLNIEDPITVTESDAVDVVEIAIKHHSSDITT---KAMAMVALLKLSSRFPSCSE--RIRDIIVQNKGSLVLELQQRSIEFNSIVEKHQNIRSTLVERMP 547
            EKF+P+K W+ID +L+VL  AGN+V++E+  A I ++ +  +L  YTV+ L+  +     QESL   A+W IGE+GD+L+  G   N ED   V E    DVV++      S       +   + +L KL +R    S+  RI  II   + S+ +E+QQRS+EF +++ K  +IR  ++E MP
Sbjct:  411 EKFAPNKRWHIDTVLRVLKLAGNYVREEILSAFIRLVCHTPELQAYTVQKLFSGLHQDFSQESLTLAAVWVIGEFGDVLIQGG---NFEDEELVREVQPKDVVDLLSSVLDSPYVNGLIRQFVLTSLAKLHTRLSDASQQSRIEQIIASFETSVEVEIQQRSVEFATLL-KRSDIRQGVLESMP 590          
BLAST of CV712582 vs. ExPASy Swiss-Prot
Match: AP1G1_SCHPO (AP-1 complex subunit gamma-1 OS=Schizosaccharomyces pombe GN=apl4 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.551e-23
Identity = 68/184 (36.96%), Postives = 102/184 (55.43%), Query Frame = 2
Query:   17 FSPDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDLHGYTVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNNGGVLNIED----PITVTESDAVDVVEIAIKH-HSSDITTKAMAMVALLKLSSRFPSCS--ERIRDIIVQNKGSLVLELQQRSIEFNSIVEKHQNIRSTLVERMP 547
            F+P+K W+ D +L+V   AGNFV +      + +I++A +LH Y V  LY A++  + QE+L   A W IGEYG ML++    +N +D    P +V+ESD VD++E       +S        + AL KLS+R  S S   RI  II   K +   E+QQRS+EF+ I+     +  T++E  P
Sbjct:  439 FAPNKRWHFDTLLRVFKSAGNFVSESTLSTFLRLIASAPELHEYAVVKLYAALKEDVSQEALTLSAFWVIGEYGQMLLS--PTMNFDDDQTLPHSVSESDIVDIIEEVFNSVEASRYIIVQYGLFALTKLSARLGSSSTASRIDKIIYSYKRNKNTEVQQRSVEFHLIL-NDSKLSKTILEPTP 619          
BLAST of CV712582 vs. ExPASy Swiss-Prot
Match: AP2A2_DICDI (AP-2 complex subunit alpha-2 OS=Dictyostelium discoideum GN=ap2a1-1 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.207e-19
Identity = 43/187 (22.99%), Postives = 104/187 (55.61%), Query Frame = 2
Query:    2 SMVEKFSPDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDLHGYTVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNNGGVLNIEDPITVTESDAVDVVEIAIKHHSSDITTKAMAMVALLKLSSRFPSCSERIRDIIVQNKGSLVLELQQRSIEFNSIVEKHQNIRSTLVERMPVLDEA 562
            ++ EKF+ +  WY+D +L++++ AG+FV D++W  ++ +++N  D+  Y    ++ A+Q+    E+L++V  + +GE+G ++ +N              S  V    +  K ++    TKA+ +    K  + FP  +++ +++  Q++  +  E+QQR+ E+ ++   ++++  T+++ +P   +A
Sbjct:  433 NLAEKFASNYSWYVDVILQLITTAGDFVSDDIWFRVVKIVTNHEDIQAYAASTVFNALQSRNCHETLIKVGGYILGEFGHLIADN-----------PQSSPLVQFNILHSKFNTCGAPTKALLLSTYAKFVNLFPELTQQTQEVFKQHQSYIDAEIQQRACEYLNLTSLNEDLMQTVLDVIPAFIDA 608          
BLAST of CV712582 vs. ExPASy Swiss-Prot
Match: AP2A2_RAT (AP-2 complex subunit alpha-2 OS=Rattus norvegicus GN=Ap2a2 PE=1 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 1.160e-18
Identity = 56/210 (26.67%), Postives = 107/210 (50.95%), Query Frame = 2
Query:    5 MVEKFSPDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDLHGYTVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNNGGVLNIEDPITVTESDAVDVVEIAIKHHSSDITTKAMAMVALLKLSSRFPSCSERIRDIIVQNK--GSLVLELQQRSIEFNSI-VEKHQNIRSTLVERMPVLDEATFSGRRAGSLPATVSTSSGTS 625
            + EK++ D  WY+D +L ++  AG++V +EVW+ +I ++ N  D+ GY  + ++ A+Q     E+LV+V  + +GE+G+++          DP     S  +    +  K H   + T+A+ +   +K  + FP     I+D++  +    +  +ELQQR++E+  +      +I +T++E MP   E      R  S+ A +    G S
Sbjct:  430 LAEKYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDVQGYAAKTVFEALQAPACHENLVKVGGYILGEFGNLIAG--------DP---RSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPEVKATIQDVLRSDSQLKNADVELQQRAVEYLRLSTVASTDILATVLEEMPPFPE------RESSILAKLKKKKGPS 622          
The following BLAST results are available for this feature:
BLAST of CV712582 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
AP1G1_MOUSE1.839e-4041.49AP-1 complex subunit gamma-1 OS=Mus musculus GN=Ap... [more]
AP1G1_HUMAN1.839e-4041.49AP-1 complex subunit gamma-1 OS=Homo sapiens GN=AP... [more]
AP1G1_PONAB4.097e-4041.49AP-1 complex subunit gamma-1 OS=Pongo abelii GN=AP... [more]
AP1G2_MOUSE1.276e-3339.56AP-1 complex subunit gamma-like 2 OS=Mus musculus ... [more]
AP1G2_HUMAN8.274e-3338.46AP-1 complex subunit gamma-like 2 OS=Homo sapiens ... [more]
AP1G_DICDI1.011e-3036.51AP-1 complex subunit gamma OS=Dictyostelium discoi... [more]
AP1G1_USTMA4.397e-2636.96AP-1 complex subunit gamma-1 OS=Ustilago maydis GN... [more]
AP1G1_SCHPO4.551e-2336.96AP-1 complex subunit gamma-1 OS=Schizosaccharomyce... [more]
AP2A2_DICDI5.207e-1922.99AP-2 complex subunit alpha-2 OS=Dictyostelium disc... [more]
AP2A2_RAT1.160e-1826.67AP-2 complex subunit alpha-2 OS=Rattus norvegicus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001J15_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001J15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712582 ID=CV712582; Name=CV712582; organism=Citrus sinensis; type=EST; length=726bp
CTCCATGGTTGAAAAGTTTTCCCCAGACAAAATTTGGTACATCGATCAGA
TGCTCAAGGTTCTCTCTGAGGCTGGAAATTTTGTAAAAGATGAAGTATGG
CATGCCCTTATTGTTGTGATAAGCAATGCCTCTGATCTCCATGGTTATAC
AGTCAGGGCTCTTTATAGGGCAGTTCAAACGTCTATTGAACAGGAGAGCC
TTGTTCGAGTTGCTATTTGGTGCATTGGAGAATATGGTGACATGCTGGTC
AATAATGGTGGAGTGCTTAATATAGAGGATCCAATAACAGTGACAGAGTC
TGATGCTGTGGATGTTGTAGAGATTGCTATTAAACATCATAGCTCAGATA
TCACTACTAAAGCAATGGCTATGGTTGCTCTTTTGAAGCTCTCTTCTCGT
TTTCCATCTTGTTCAGAGAGGATAAGAGATATTATCGTCCAAAATAAGGG
AAGCCTTGTGCTTGAGTTGCAGCAGAGATCTATCGAGTTCAATTCCATTG
TAGAGAAGCATCAGAATATTAGGTCTACACTGGTTGAAAGGATGCCGGTA
TTGGATGAGGCAACCTTCAGTGGAAGGAGGGCTGGTTCTTTGCCTGCAAC
AGTATCAACTTCAAGTGGCACTTCACTTAACCTTCCAAATGGAGTTGCCA
AACCTGCTGCGGCTCCTCTTGTGGACTTACTTGATCTAAGTTCAGATGAT
GCTCCTGTACCTAGCTCCTCTGGCAA
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