CV712575

Overview
NameCV712575
Unique NameCV712575
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length568
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712575 vs. ExPASy Swiss-Prot
Match: CML13_ARATH (Probable calcium-binding protein CML13 OS=Arabidopsis thaliana GN=CML13 PE=1 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 5.932e-61
Identity = 113/128 (88.28%), Postives = 123/128 (96.09%), Query Frame = 1
Query:   10 FDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIISEEKLTAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMVAK 393
            FDTDGDGKIAPSELGILMRSLGGNPTQAQLKSII+ E L++PFDF RFLDLMAKH+K EPFDRQLRDAFKVLDK+ TGFV+V+DLRHILTSIGEKLEP+EFDEWI+EVDVGSDGKI+YEDFIARMVAK
Sbjct:   21 FDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIIASENLSSPFDFNRFLDLMAKHLKTEPFDRQLRDAFKVLDKEGTGFVAVADLRHILTSIGEKLEPNEFDEWIKEVDVGSDGKIRYEDFIARMVAK 148          
BLAST of CV712575 vs. ExPASy Swiss-Prot
Match: CML14_ARATH (Probable calcium-binding protein CML14 OS=Arabidopsis thaliana GN=CML14 PE=2 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 3.845e-60
Identity = 111/128 (86.72%), Postives = 123/128 (96.09%), Query Frame = 1
Query:   10 FDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIISEEKLTAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMVAK 393
            FDTDGDGKIAPSELGILMRSLGGNPT++QLKSII+ E L++PFDF RFLDLMAKH+K EPFDRQLRDAFKVLDK+ TGFV+V+DLRHILTSIGEKL+PSEFDEWI+EVDVGSDGKI+YEDFIARMVAK
Sbjct:   21 FDTDGDGKIAPSELGILMRSLGGNPTESQLKSIITTENLSSPFDFNRFLDLMAKHLKTEPFDRQLRDAFKVLDKEGTGFVAVADLRHILTSIGEKLQPSEFDEWIKEVDVGSDGKIRYEDFIARMVAK 148          
BLAST of CV712575 vs. ExPASy Swiss-Prot
Match: CML7_ORYSJ (Probable calcium-binding protein CML7 OS=Oryza sativa subsp. japonica GN=CML7 PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 7.505e-56
Identity = 102/128 (79.69%), Postives = 116/128 (90.62%), Query Frame = 1
Query:   10 FDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIISEEKLTAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMVAK 393
            FDTDGDG+IAPSELG+LMRSLGGNPTQAQL+ I ++EKLTAPFDFPRFLDLM  H++PEPFDR LRDAF+VLDKD +G VSV+DLRH+LTSIGEKLEP EFDEWIREVDV  DG I+Y+DFI R+VAK
Sbjct:   21 FDTDGDGRIAPSELGVLMRSLGGNPTQAQLRDIAAQEKLTAPFDFPRFLDLMRAHLRPEPFDRPLRDAFRVLDKDASGTVSVADLRHVLTSIGEKLEPHEFDEWIREVDVAPDGTIRYDDFIRRIVAK 148          
BLAST of CV712575 vs. ExPASy Swiss-Prot
Match: CALM1_SOLTU (Calmodulin-1 OS=Solanum tuberosum GN=PCM1 PE=1 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 3.068e-33
Identity = 67/130 (51.54%), Postives = 91/130 (70.00%), Query Frame = 1
Query:   10 FDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIISEEKL--TAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMVAK 393
            FD DGDG I   ELG +MRSLG NPT+A+L+ +ISE         DFP FL+LMA+ MK    + +L++AFKV DKD  GF+S ++LRH++T++GEKL   E DE IRE D+  DG++ YE+F+  M+AK
Sbjct:   20 FDKDGDGCITTKELGTVMRSLGQNPTEAELQDMISEADADQNGTIDFPEFLNLMARKMKDTDSEEELKEAFKVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVRMMLAK 149          
BLAST of CV712575 vs. ExPASy Swiss-Prot
Match: CALM_SOLLC (Calmodulin OS=Solanum lycopersicum GN=CALM1 PE=2 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 4.007e-33
Identity = 67/130 (51.54%), Postives = 91/130 (70.00%), Query Frame = 1
Query:   10 FDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIISEEKL--TAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMVAK 393
            FD DGDG I   ELG +MRSLG NPT+A+L+ +ISE         DFP FL+LMA+ MK    + +L++AFKV DKD  GF+S ++LRH++T++GEKL   E DE IRE D+  DG++ YE+F+  M+AK
Sbjct:   20 FDKDGDGCITTKELGTVMRSLGQNPTEAELQDMISEVDADQNGTIDFPEFLNLMARKMKDTDSEEELKEAFKVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVRMMLAK 149          
BLAST of CV712575 vs. ExPASy Swiss-Prot
Match: CALM2_ORYSJ (Calmodulin-2 OS=Oryza sativa subsp. japonica GN=CAM2 PE=2 SV=3)

HSP 1 Score: 139.813 bits (351), Expect = 8.927e-33
Identity = 68/130 (52.31%), Postives = 91/130 (70.00%), Query Frame = 1
Query:   10 FDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIISEEKL--TAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMVAK 393
            FD DGDG I   ELG +MRSLG NPT+A+L+ +I+E         DFP FL+LMAK MK    + +L++AF+V DKD  GF+S ++LRH++T++GEKL   E DE IRE DV  DG+I YE+F+  M+AK
Sbjct:   20 FDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMAKKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149          
BLAST of CV712575 vs. ExPASy Swiss-Prot
Match: CALM2_ORYSI (Calmodulin-2 OS=Oryza sativa subsp. indica GN=CAM2 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 8.927e-33
Identity = 68/130 (52.31%), Postives = 91/130 (70.00%), Query Frame = 1
Query:   10 FDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIISEEKL--TAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMVAK 393
            FD DGDG I   ELG +MRSLG NPT+A+L+ +I+E         DFP FL+LMAK MK    + +L++AF+V DKD  GF+S ++LRH++T++GEKL   E DE IRE DV  DG+I YE+F+  M+AK
Sbjct:   20 FDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMAKKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149          
BLAST of CV712575 vs. ExPASy Swiss-Prot
Match: CALM_MOUSC (Calmodulin OS=Mougeotia scalaris PE=2 SV=3)

HSP 1 Score: 139.428 bits (350), Expect = 1.166e-32
Identity = 66/130 (50.77%), Postives = 90/130 (69.23%), Query Frame = 1
Query:   10 FDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIISEEKL--TAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMVAK 393
            FD DGDG I   ELG +MRSLG NPT+A+L+ +I+E         DFP FL+LMA+ MK    + +L++AFKV DKD  G++S +D RH++T++GEKL   E DE IRE DV  DG++ YE+F+  M+AK
Sbjct:   20 FDKDGDGSITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFKVFDKDQNGYISAADWRHVMTNLGEKLTDEEVDEMIREADVDGDGQVNYEEFVKMMMAK 149          
BLAST of CV712575 vs. ExPASy Swiss-Prot
Match: CALM2_PETHY (Calmodulin-2 OS=Petunia hybrida GN=CAM72 PE=2 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.166e-32
Identity = 66/130 (50.77%), Postives = 91/130 (70.00%), Query Frame = 1
Query:   10 FDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIISEEKL--TAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMVAK 393
            FD DGDG I   ELG +MRSLG NPT+A+L+ +ISE         DFP FL+LMA+ MK    + +L++AFKV DKD  G++S +D+RH++T++GEKL   E DE IRE D+  DG++ YE+F+  M+AK
Sbjct:   20 FDKDGDGCITTKELGTVMRSLGQNPTEAELQDMISEVDADQNGTIDFPEFLNLMARKMKDTDSEEELKEAFKVFDKDQNGYISAADVRHVMTNLGEKLTDEEVDEMIREADMDGDGQVNYEEFVRMMLAK 149          
BLAST of CV712575 vs. ExPASy Swiss-Prot
Match: CALM6_ARATH (Calmodulin-6 OS=Arabidopsis thaliana GN=CAM6 PE=1 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 1.523e-32
Identity = 67/130 (51.54%), Postives = 91/130 (70.00%), Query Frame = 1
Query:   10 FDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIISEEKL--TAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMVAK 393
            FD DGDG I   ELG +MRSLG NPT+A+L+ +I+E         DFP FL+LMA+ MK    + +L++AF+V DKD  GF+S ++LRH++T++GEKL   E DE IRE DV  DG+I YE+F+  M+AK
Sbjct:   20 FDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLSDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149          
The following BLAST results are available for this feature:
BLAST of CV712575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 268
Match NameE-valueIdentityDescription
CML13_ARATH5.932e-6188.28Probable calcium-binding protein CML13 OS=Arabidop... [more]
CML14_ARATH3.845e-6086.72Probable calcium-binding protein CML14 OS=Arabidop... [more]
CML7_ORYSJ7.505e-5679.69Probable calcium-binding protein CML7 OS=Oryza sat... [more]
CALM1_SOLTU3.068e-3351.54Calmodulin-1 OS=Solanum tuberosum GN=PCM1 PE=1 SV=... [more]
CALM_SOLLC4.007e-3351.54Calmodulin OS=Solanum lycopersicum GN=CALM1 PE=2 S... [more]
CALM2_ORYSJ8.927e-3352.31Calmodulin-2 OS=Oryza sativa subsp. japonica GN=CA... [more]
CALM2_ORYSI8.927e-3352.31Calmodulin-2 OS=Oryza sativa subsp. indica GN=CAM2... [more]
CALM_MOUSC1.166e-3250.77Calmodulin OS=Mougeotia scalaris PE=2 SV=3[more]
CALM2_PETHY1.166e-3250.77Calmodulin-2 OS=Petunia hybrida GN=CAM72 PE=2 SV=2[more]
CALM6_ARATH1.523e-3251.54Calmodulin-6 OS=Arabidopsis thaliana GN=CAM6 PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001J12_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001J12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712575 ID=CV712575; Name=CV712575; organism=Citrus sinensis; type=EST; length=568bp
TCACATTGGTTCGACACAGACGGTGACGGAAAGATCGCGCCGTCTGAGCT
AGGGATCCTAATGAGGTCACTTGGGGGAAACCCGACCCAGGCCCAGCTCA
AATCCATAATCTCCGAGGAAAAACTAACGGCACCCTTTGACTTCCCGCGG
TTCCTTGACCTGATGGCCAAGCACATGAAACCTGAGCCCTTCGATCGCCA
GTTGCGTGACGCCTTCAAAGTGCTGGATAAAGATAACACCGGCTTCGTCT
CCGTCTCCGATCTACGACACATTCTCACTTCTATTGGGGAGAAGCTGGAG
CCTTCCGAGTTTGATGAGTGGATCCGGGAAGTGGATGTCGGGTCCGACGG
CAAGATCAAGTACGAGGATTTTATTGCCAGGATGGTGGCCAAGTGACCAG
TGATTGGATCTTCAACTTTAAGATATGATTAATGGGTGTCTGTTTATTTT
TAATGTTTTCTGCAATTAATGTTGAGTTTTGTGTACCTTTCTGTTTTAAT
GTGATGGATTTTGATGGTATTTCTTGAATTGTTGAAAGTAATGCTGACCT
TTTGTTAGGTATTTTCCT
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