CV712573

Overview
NameCV712573
Unique NameCV712573
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length548
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712573 vs. ExPASy Swiss-Prot
Match: HDT1_ARATH (Histone deacetylase HDT1 OS=Arabidopsis thaliana GN=HDT1 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.004e-31
Identity = 68/120 (56.67%), Postives = 88/120 (73.33%), Query Frame = 3
Query:   39 MEFWGVEVKAGQPLKVKPNFDNIIHLSQASLGESKKEKGHDSVPLFVKFGDKKLVLGTLIPENIPQLSFDLVFEKEFELSHNWKNGSIYFCGYQTPLPMDSSDEFDMGDSDEEEQEELPS 398
            MEFWG+EVK+G+P+ V P    +IH+SQASLGE K +KG + VPL VK G++ LVLGTL  ENIPQL  DLVF+KEFELSH W  GS+YF GY+TP    + +     + +EEE+EE+P+
Sbjct:    1 MEFWGIEVKSGKPVTVTPEEGILIHVSQASLGECKNKKG-EFVPLHVKVGNQNLVLGTLSTENIPQLFCDLVFDKEFELSHTWGKGSVYFVGYKTP----NIEPQGYSEEEEEEEEEVPA 115          
BLAST of CV712573 vs. ExPASy Swiss-Prot
Match: HDT1_SOLCH (Histone deacetylase HDT1 OS=Solanum chacoense GN=HDT1 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 7.127e-29
Identity = 65/115 (56.52%), Postives = 82/115 (71.30%), Query Frame = 3
Query:   39 MEFWGVEVKAGQPLKVKPNFDNIIHLSQASLGESKKEKGHDSVPLFVKFGDKKLVLGTLIPENIPQLSFDLVFEKEFELSHNWKNGSIYFCGYQ--TPLPMDSSDEFDMGDSDEE 377
            MEFWG EVK+G+PL V+P    ++HLSQASLGE KK+K  +SV L V    KKLVLGTL  E +PQ  FDLVF+++FELSHN K+GS+YF GY+   P   +  DE D  +SDE+
Sbjct:    1 MEFWGAEVKSGEPLTVQPGDGMVLHLSQASLGELKKDKS-ESVCLSVNIDGKKLVLGTLNSEKVPQQQFDLVFDRDFELSHNLKSGSVYFFGYKATNPFEEEEDDEDDYDESDED 114          
BLAST of CV712573 vs. ExPASy Swiss-Prot
Match: HDT2_MAIZE (Histone deacetylase HDT2 OS=Zea mays GN=HDT2 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.344e-27
Identity = 62/121 (51.24%), Postives = 81/121 (66.94%), Query Frame = 3
Query:   39 MEFWGVEVKAGQPLKVKPNFDNIIHLSQASLGESKKEKGHDSVPLFVKFGDKKLVLGTLIPENIPQLSFDLVFEKEFELSHNWKNGSIYFCGYQTPLPMDSSDEFDMGDSDEEEQEELPSI 401
            MEFWG+EVK G  +K +P    I+H+SQA+LGESKK    DS  ++VK  DKKL +GTL  +  PQ+ FDLVF KEFELSH  K  S++F GY+   P++  DE D+   DEEE+  +P I
Sbjct:    1 MEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESKKS---DSALMYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYKVEQPIE-GDEMDLDSEDEEEELNIPVI 117          
BLAST of CV712573 vs. ExPASy Swiss-Prot
Match: HDT3_MAIZE (Histone deacetylase HDT3 OS=Zea mays GN=HDT3 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.138e-26
Identity = 56/121 (46.28%), Postives = 82/121 (67.77%), Query Frame = 3
Query:   39 MEFWGVEVKAGQPLKVKPNFDNIIHLSQASLGESKKEKGHDSVPLFVKFGDKKLVLGTLIPENIPQLSFDLVFEKEFELSHNWKNGSIYFCGYQTPLPMDSSDEFDMGDSDEEEQEELPSI 401
            MEFWG+EVK G  +K +P +  ++HLSQA+LGESKK    D+  ++VK  D+KL +GTL  +  P + FDL+F+KEFELSH  K  S++F GY+   P +  DE D+   DE+E+  +P++
Sbjct:    1 MEFWGLEVKPGSTVKCEPGYGFVLHLSQAALGESKKS---DNALMYVKIDDQKLAIGTLSVDKNPHIQFDLIFDKEFELSHTSKTTSVFFTGYKVEQPFE-EDEMDLDSEDEDEELNVPAV 117          
BLAST of CV712573 vs. ExPASy Swiss-Prot
Match: HDT1_SOYBN (Histone deacetylase HDT1 OS=Glycine max GN=HDT1 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.138e-26
Identity = 68/172 (39.53%), Postives = 96/172 (55.81%), Query Frame = 3
Query:   39 MEFWGVEVKAGQPLKVKPN--FDNIIHLSQASLGESKKEKGHDSVPLFVKFGDKKLVLGTLIPENIPQLSFDLVFEKEFELSHNWKNGSIYFCGYQTPLPMDSSDEFDMGDSDEEEQEELPSITXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLIKDVKPKEDGDDESDDE 548
            MEFWGVEVK GQ + V P    D+ IH+SQ +LGE+KK+K ++ V L++K G++K+VLGTL  + IP LS DLV + + ELSH  K+ S++FCGY+     D++ +F   DS EE++E    +                                 K   PK+D DD+SDDE
Sbjct:    1 MEFWGVEVKVGQTVTVDPMDPVDSYIHISQVALGEAKKDKPNEPVVLYLKVGEQKIVLGTLSRDGIPHLSLDLVLDSDSELSHTSKSASVFFCGYKVLTGNDNASDF--SDSSEEDEE----LALEGQDNGKPELKAEGAKVTKPSKSIPKIGAPAKAADPKKDEDDDSDDE 166          
BLAST of CV712573 vs. ExPASy Swiss-Prot
Match: HDT1_MAIZE (Histone deacetylase HDT1 OS=Zea mays GN=HDT1 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.535e-26
Identity = 56/121 (46.28%), Postives = 81/121 (66.94%), Query Frame = 3
Query:   39 MEFWGVEVKAGQPLKVKPNFDNIIHLSQASLGESKKEKGHDSVPLFVKFGDKKLVLGTLIPENIPQLSFDLVFEKEFELSHNWKNGSIYFCGYQTPLPMDSSDEFDMGDSDEEEQEELPSI 401
            MEFWG+EVK G  +K +P +  ++HLSQA+LGESKK    D+  ++VK  D+KL +GTL  +  P + FDL+F+KEFELSH  K  S++F GY+   P +  DE D+   DE+E+  +P +
Sbjct:    1 MEFWGLEVKPGSTVKCEPGYGFVLHLSQAALGESKKS---DNALMYVKIDDQKLAIGTLSVDKNPHIQFDLIFDKEFELSHTSKTTSVFFTGYKVEQPFE-EDEMDLDSEDEDEELNVPVV 117          
BLAST of CV712573 vs. ExPASy Swiss-Prot
Match: HDT3_ARATH (Histone deacetylase HDT3 OS=Arabidopsis thaliana GN=HDT3 PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 1.178e-23
Identity = 53/108 (49.07%), Postives = 71/108 (65.74%), Query Frame = 3
Query:   39 MEFWGVEVKAGQPLKVKPNFDNIIHLSQASLGESKKEKGHDSVPLFVKFGDKKLVLGTLIPENIPQLSFDLVFEKEFELSHNWKNGSIYFCGYQT----PLPMDSSDE 350
            MEFWGVEVK G+PL + P  D ++H+SQ +LGESK     + + L+V  G  KL++GTL  E  PQLS ++V E+ F LSH WKNGS++F GY+     P P D  D+
Sbjct:    1 MEFWGVEVKNGKPLHLDPGLDRLVHISQVALGESKNNVT-EPIQLYVTVGSDKLLIGTLSHEKFPQLSTEIVLERNFALSHTWKNGSVFFSGYKVDASDPEPEDLIDD 107          
BLAST of CV712573 vs. ExPASy Swiss-Prot
Match: HDT2_ARATH (Histone deacetylase HDT2 OS=Arabidopsis thaliana GN=HDT2 PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 9.330e-21
Identity = 64/170 (37.65%), Postives = 87/170 (51.18%), Query Frame = 3
Query:   39 MEFWGVEVKAGQPLKVKPNFDNIIHLSQASLGESKKEKGHDSVPLFVKFGDKKLVLGTLIPENIPQLSFDLVFEKEFELSHNWKNGSIYFCGYQTPLPMDSSDEFDMGDSDEEEQEELPSITXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLIKDVKPKEDGDDESDDE 548
            MEFWGV V      KV P  D+++H+SQASL  + K    +SV L V  G  KLV+GTL  +  PQ+SFDLVF+KEFELSH+    +++F GY++  P    D+F   D DE+  E +P+                                   + KP+ D +DESDDE
Sbjct:    1 MEFWGVAVTPKNATKVTPEEDSLVHISQASLDCTVKSG--ESVVLSVTVGGAKLVIGTLSQDKFPQISFDLVFDKEFELSHSGTKANVHFIGYKS--PNIEQDDFTSSD-DEDVPEAVPAPAPTAVTANGNAGAAVVKADTKPKAKPAEVKP--AEEKPESDEEDESDDE 163          
BLAST of CV712573 vs. ExPASy Swiss-Prot
Match: HDT4_ARATH (Histone deacetylase HDT4 OS=Arabidopsis thaliana GN=HDT4 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.919e-16
Identity = 49/119 (41.18%), Postives = 69/119 (57.98%), Query Frame = 3
Query:   39 MEFWGVEVKAGQPLKVKPNFDNIIHLSQASLGESKKEKGHDSVPLFVKFGDKK--LVLGTLIPENIPQLSFDLVFEKEFELSHNWKNGSIYFCGYQTPLPMDSSDEFDMG-DSDEEEQE 386
            MEFWG+E+K G+P KV      ++H SQ +LG+ +K K  ++  ++VK GD +   ++G L  +  PQ S DL    EFE+SHN    S+Y  GY+T    D+ DE D   DSD E  E
Sbjct:    1 MEFWGIEIKPGKPFKVIQKDGFMVHASQVTLGDVEKVKKDETFAVYVKIGDDENGFMIGNL-SQKFPQFSIDLYLGHEFEISHN-STSSVYLIGYRT---FDAFDELDEEIDSDSELDE 114          
The following BLAST results are available for this feature:
BLAST of CV712573 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
HDT1_ARATH2.004e-3156.67Histone deacetylase HDT1 OS=Arabidopsis thaliana G... [more]
HDT1_SOLCH7.127e-2956.52Histone deacetylase HDT1 OS=Solanum chacoense GN=H... [more]
HDT2_MAIZE1.344e-2751.24Histone deacetylase HDT2 OS=Zea mays GN=HDT2 PE=1 ... [more]
HDT3_MAIZE1.138e-2646.28Histone deacetylase HDT3 OS=Zea mays GN=HDT3 PE=2 ... [more]
HDT1_SOYBN1.138e-2639.53Histone deacetylase HDT1 OS=Glycine max GN=HDT1 PE... [more]
HDT1_MAIZE2.535e-2646.28Histone deacetylase HDT1 OS=Zea mays GN=HDT1 PE=1 ... [more]
HDT3_ARATH1.178e-2349.07Histone deacetylase HDT3 OS=Arabidopsis thaliana G... [more]
HDT2_ARATH9.330e-2137.65Histone deacetylase HDT2 OS=Arabidopsis thaliana G... [more]
HDT4_ARATH6.919e-1641.18Histone deacetylase HDT4 OS=Arabidopsis thaliana G... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_0001J10_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001J10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712573 ID=CV712573; Name=CV712573; organism=Citrus sinensis; type=EST; length=548bp
GCTTCACTCTAACACACGTATCCCGTCAGTCATCTTCGATGGAGTTTTGG
GGTGTTGAAGTTAAGGCTGGGCAGCCTCTTAAAGTGAAACCTAACTTTGA
CAATATCATCCATCTTTCACAGGCATCACTTGGTGAGTCAAAGAAAGAGA
AAGGACATGATTCTGTGCCCCTCTTTGTGAAGTTTGGTGACAAGAAGCTT
GTTCTTGGAACACTTATCCCTGAAAATATCCCTCAATTATCTTTTGATCT
AGTTTTTGAGAAAGAGTTTGAGCTTTCTCACAACTGGAAGAACGGGAGTA
TCTACTTTTGTGGTTACCAGACCCCTTTGCCTATGGATAGTTCAGATGAA
TTTGATATGGGGGACTCTGATGAAGAAGAGCAAGAGGAGCTTCCTTCCAT
TACTGCTGCAGCAGAGAACGGAAAAGCTGGGCAAAAGGCTGAGAAAGCAA
AGGCTGCTACTCCCATGGCTATCCCGGCTGCTAAGCCTGCTAAGCTGATT
AAGGATGTGAAACCCAAAGAAGATGGTGACGATGAATCAGATGATGAA
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