CV712573
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV712573 vs. ExPASy Swiss-Prot
Match: HDT1_ARATH (Histone deacetylase HDT1 OS=Arabidopsis thaliana GN=HDT1 PE=1 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 2.004e-31 Identity = 68/120 (56.67%), Postives = 88/120 (73.33%), Query Frame = 3 Query: 39 MEFWGVEVKAGQPLKVKPNFDNIIHLSQASLGESKKEKGHDSVPLFVKFGDKKLVLGTLIPENIPQLSFDLVFEKEFELSHNWKNGSIYFCGYQTPLPMDSSDEFDMGDSDEEEQEELPS 398 MEFWG+EVK+G+P+ V P +IH+SQASLGE K +KG + VPL VK G++ LVLGTL ENIPQL DLVF+KEFELSH W GS+YF GY+TP + + + +EEE+EE+P+ Sbjct: 1 MEFWGIEVKSGKPVTVTPEEGILIHVSQASLGECKNKKG-EFVPLHVKVGNQNLVLGTLSTENIPQLFCDLVFDKEFELSHTWGKGSVYFVGYKTP----NIEPQGYSEEEEEEEEEVPA 115
BLAST of CV712573 vs. ExPASy Swiss-Prot
Match: HDT1_SOLCH (Histone deacetylase HDT1 OS=Solanum chacoense GN=HDT1 PE=2 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 7.127e-29 Identity = 65/115 (56.52%), Postives = 82/115 (71.30%), Query Frame = 3 Query: 39 MEFWGVEVKAGQPLKVKPNFDNIIHLSQASLGESKKEKGHDSVPLFVKFGDKKLVLGTLIPENIPQLSFDLVFEKEFELSHNWKNGSIYFCGYQ--TPLPMDSSDEFDMGDSDEE 377 MEFWG EVK+G+PL V+P ++HLSQASLGE KK+K +SV L V KKLVLGTL E +PQ FDLVF+++FELSHN K+GS+YF GY+ P + DE D +SDE+ Sbjct: 1 MEFWGAEVKSGEPLTVQPGDGMVLHLSQASLGELKKDKS-ESVCLSVNIDGKKLVLGTLNSEKVPQQQFDLVFDRDFELSHNLKSGSVYFFGYKATNPFEEEEDDEDDYDESDED 114
BLAST of CV712573 vs. ExPASy Swiss-Prot
Match: HDT2_MAIZE (Histone deacetylase HDT2 OS=Zea mays GN=HDT2 PE=1 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 1.344e-27 Identity = 62/121 (51.24%), Postives = 81/121 (66.94%), Query Frame = 3 Query: 39 MEFWGVEVKAGQPLKVKPNFDNIIHLSQASLGESKKEKGHDSVPLFVKFGDKKLVLGTLIPENIPQLSFDLVFEKEFELSHNWKNGSIYFCGYQTPLPMDSSDEFDMGDSDEEEQEELPSI 401 MEFWG+EVK G +K +P I+H+SQA+LGESKK DS ++VK DKKL +GTL + PQ+ FDLVF KEFELSH K S++F GY+ P++ DE D+ DEEE+ +P I Sbjct: 1 MEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESKKS---DSALMYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYKVEQPIE-GDEMDLDSEDEEEELNIPVI 117
BLAST of CV712573 vs. ExPASy Swiss-Prot
Match: HDT3_MAIZE (Histone deacetylase HDT3 OS=Zea mays GN=HDT3 PE=2 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.138e-26 Identity = 56/121 (46.28%), Postives = 82/121 (67.77%), Query Frame = 3 Query: 39 MEFWGVEVKAGQPLKVKPNFDNIIHLSQASLGESKKEKGHDSVPLFVKFGDKKLVLGTLIPENIPQLSFDLVFEKEFELSHNWKNGSIYFCGYQTPLPMDSSDEFDMGDSDEEEQEELPSI 401 MEFWG+EVK G +K +P + ++HLSQA+LGESKK D+ ++VK D+KL +GTL + P + FDL+F+KEFELSH K S++F GY+ P + DE D+ DE+E+ +P++ Sbjct: 1 MEFWGLEVKPGSTVKCEPGYGFVLHLSQAALGESKKS---DNALMYVKIDDQKLAIGTLSVDKNPHIQFDLIFDKEFELSHTSKTTSVFFTGYKVEQPFE-EDEMDLDSEDEDEELNVPAV 117
BLAST of CV712573 vs. ExPASy Swiss-Prot
Match: HDT1_SOYBN (Histone deacetylase HDT1 OS=Glycine max GN=HDT1 PE=2 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.138e-26 Identity = 68/172 (39.53%), Postives = 96/172 (55.81%), Query Frame = 3 Query: 39 MEFWGVEVKAGQPLKVKPN--FDNIIHLSQASLGESKKEKGHDSVPLFVKFGDKKLVLGTLIPENIPQLSFDLVFEKEFELSHNWKNGSIYFCGYQTPLPMDSSDEFDMGDSDEEEQEELPSITXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLIKDVKPKEDGDDESDDE 548 MEFWGVEVK GQ + V P D+ IH+SQ +LGE+KK+K ++ V L++K G++K+VLGTL + IP LS DLV + + ELSH K+ S++FCGY+ D++ +F DS EE++E + K PK+D DD+SDDE Sbjct: 1 MEFWGVEVKVGQTVTVDPMDPVDSYIHISQVALGEAKKDKPNEPVVLYLKVGEQKIVLGTLSRDGIPHLSLDLVLDSDSELSHTSKSASVFFCGYKVLTGNDNASDF--SDSSEEDEE----LALEGQDNGKPELKAEGAKVTKPSKSIPKIGAPAKAADPKKDEDDDSDDE 166
BLAST of CV712573 vs. ExPASy Swiss-Prot
Match: HDT1_MAIZE (Histone deacetylase HDT1 OS=Zea mays GN=HDT1 PE=1 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 2.535e-26 Identity = 56/121 (46.28%), Postives = 81/121 (66.94%), Query Frame = 3 Query: 39 MEFWGVEVKAGQPLKVKPNFDNIIHLSQASLGESKKEKGHDSVPLFVKFGDKKLVLGTLIPENIPQLSFDLVFEKEFELSHNWKNGSIYFCGYQTPLPMDSSDEFDMGDSDEEEQEELPSI 401 MEFWG+EVK G +K +P + ++HLSQA+LGESKK D+ ++VK D+KL +GTL + P + FDL+F+KEFELSH K S++F GY+ P + DE D+ DE+E+ +P + Sbjct: 1 MEFWGLEVKPGSTVKCEPGYGFVLHLSQAALGESKKS---DNALMYVKIDDQKLAIGTLSVDKNPHIQFDLIFDKEFELSHTSKTTSVFFTGYKVEQPFE-EDEMDLDSEDEDEELNVPVV 117
BLAST of CV712573 vs. ExPASy Swiss-Prot
Match: HDT3_ARATH (Histone deacetylase HDT3 OS=Arabidopsis thaliana GN=HDT3 PE=1 SV=2) HSP 1 Score: 109.383 bits (272), Expect = 1.178e-23 Identity = 53/108 (49.07%), Postives = 71/108 (65.74%), Query Frame = 3 Query: 39 MEFWGVEVKAGQPLKVKPNFDNIIHLSQASLGESKKEKGHDSVPLFVKFGDKKLVLGTLIPENIPQLSFDLVFEKEFELSHNWKNGSIYFCGYQT----PLPMDSSDE 350 MEFWGVEVK G+PL + P D ++H+SQ +LGESK + + L+V G KL++GTL E PQLS ++V E+ F LSH WKNGS++F GY+ P P D D+ Sbjct: 1 MEFWGVEVKNGKPLHLDPGLDRLVHISQVALGESKNNVT-EPIQLYVTVGSDKLLIGTLSHEKFPQLSTEIVLERNFALSHTWKNGSVFFSGYKVDASDPEPEDLIDD 107
BLAST of CV712573 vs. ExPASy Swiss-Prot
Match: HDT2_ARATH (Histone deacetylase HDT2 OS=Arabidopsis thaliana GN=HDT2 PE=1 SV=2) HSP 1 Score: 99.7525 bits (247), Expect = 9.330e-21 Identity = 64/170 (37.65%), Postives = 87/170 (51.18%), Query Frame = 3 Query: 39 MEFWGVEVKAGQPLKVKPNFDNIIHLSQASLGESKKEKGHDSVPLFVKFGDKKLVLGTLIPENIPQLSFDLVFEKEFELSHNWKNGSIYFCGYQTPLPMDSSDEFDMGDSDEEEQEELPSITXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLIKDVKPKEDGDDESDDE 548 MEFWGV V KV P D+++H+SQASL + K +SV L V G KLV+GTL + PQ+SFDLVF+KEFELSH+ +++F GY++ P D+F D DE+ E +P+ + KP+ D +DESDDE Sbjct: 1 MEFWGVAVTPKNATKVTPEEDSLVHISQASLDCTVKSG--ESVVLSVTVGGAKLVIGTLSQDKFPQISFDLVFDKEFELSHSGTKANVHFIGYKS--PNIEQDDFTSSD-DEDVPEAVPAPAPTAVTANGNAGAAVVKADTKPKAKPAEVKP--AEEKPESDEEDESDDE 163
BLAST of CV712573 vs. ExPASy Swiss-Prot
Match: HDT4_ARATH (Histone deacetylase HDT4 OS=Arabidopsis thaliana GN=HDT4 PE=2 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 6.919e-16 Identity = 49/119 (41.18%), Postives = 69/119 (57.98%), Query Frame = 3 Query: 39 MEFWGVEVKAGQPLKVKPNFDNIIHLSQASLGESKKEKGHDSVPLFVKFGDKK--LVLGTLIPENIPQLSFDLVFEKEFELSHNWKNGSIYFCGYQTPLPMDSSDEFDMG-DSDEEEQE 386 MEFWG+E+K G+P KV ++H SQ +LG+ +K K ++ ++VK GD + ++G L + PQ S DL EFE+SHN S+Y GY+T D+ DE D DSD E E Sbjct: 1 MEFWGIEIKPGKPFKVIQKDGFMVHASQVTLGDVEKVKKDETFAVYVKIGDDENGFMIGNL-SQKFPQFSIDLYLGHEFEISHN-STSSVYLIGYRT---FDAFDELDEEIDSDSELDE 114 The following BLAST results are available for this feature:
BLAST of CV712573 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 9
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CV712573 ID=CV712573; Name=CV712573; organism=Citrus sinensis; type=EST; length=548bpback to top |