CV712556

Overview
NameCV712556
Unique NameCV712556
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length583
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3936 contig Csv1_Contig3936:5..584. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
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BLAST of CV712556 vs. ExPASy Swiss-Prot
Match: TOM6_ARATH (Mitochondrial import receptor subunit TOM6 homolog OS=Arabidopsis thaliana GN=TOM6 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.825e-13
Identity = 32/42 (76.19%), Postives = 38/42 (90.48%), Query Frame = -1 
Query:  392 MFPGMFMKKPDKAAALKQLRSHVAMFGTWVVVIRVTPYLLHY 517
            MFPGMFM+KPDKA ALKQLR+HVA+FG+WVV+IR  PY+L Y
Sbjct:    1 MFPGMFMRKPDKAEALKQLRTHVALFGSWVVIIRAAPYVLSY 42
The following BLAST results are available for this feature:
BLAST of CV712556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TOM6_ARATH2.825e-1376.19Mitochondrial import receptor subunit TOM6 homolog... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_0001J01_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001J01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712556 ID=CV712556; Name=CV712556; organism=Citrus sinensis; type=EST; length=583bp
TTTTTTTTTTATCCAAACCTCCAGTCTCCTGGAATGGATTAAGAAAATGT
TAACGGTTTATTTAGGGAAGGTCTTTAGCATGTGAAAAAACGCGATAGAA
CAATGTATAACGACAATGGAGAAATTAATTAGTAGATACTGCTACCAAAA
GTAAATTCAACAAGAATAATCATAGACCAGTTATTGCATTTTACGAAAGT
ACCCACCCAAGCTTCAAACTCAATAACAAGTTACAGGTATGTTACCCCTG
CCAAATCCAGGGCATACATTAAAAACAATTATGACACTTCTAAACAGCAC
GTCGTTTTCTCTTCATCTTCATCTTACAGCTGCTAGAGAGAGAAAAAGAG
ATTTAAAATTCGAGCTTGAGCTCTTCTTTTTCTCTGGAGAAATAGTGAAG
AAGGTAGGGGGTGACGCGAATCACAACGACCCAGGTCCCGAACATGGCCA
CGTGGCTCCGCAGCTGCTTCAAGGCCGCCGCCTTGTCTGGCTTCTTCATG
AACATTCCCGGAAACATCCTTGCTTCGGCTTAAACCCTAGCTTTGTGTTA
CTCTTTTGATCAGACGCTTCAATATGTTCCTCG
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