CV712552

Overview
NameCV712552
Unique NameCV712552
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length471
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV712552_ssr22 microsatellite CV712552_ssr22:22..37. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8723 contig Csv1_Contig8723:1011..1479. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712552 vs. ExPASy Swiss-Prot
Match: RPAB5_ARATH (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Arabidopsis thaliana GN=At1g61700 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.505e-33
Identity = 64/69 (92.75%), Postives = 68/69 (98.55%), Query Frame = -1
Query:  223 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSD 429
            MI+PVRCFTCGKVIGNKWDTYL+LLQADY EGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNT++KSD
Sbjct:    1 MIVPVRCFTCGKVIGNKWDTYLELLQADYAEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTMEKSD 69          
BLAST of CV712552 vs. ExPASy Swiss-Prot
Match: RPAB5_BRANA (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Brassica napus PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 5.720e-33
Identity = 65/71 (91.55%), Postives = 66/71 (92.96%), Query Frame = -1
Query:  217 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS 429
            MIIPVRCFTCGKVIGNKWD YLDLLQ DY EGDALDAL LVRYCCRRMLMTHVDLIEKLLNYNTL+KSD S
Sbjct:    1 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLVRYCCRRMLMTHVDLIEKLLNYNTLEKSDNS 71          
BLAST of CV712552 vs. ExPASy Swiss-Prot
Match: RPAB5_MOUSE (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Mus musculus GN=Polr2l PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.105e-27
Identity = 54/67 (80.60%), Postives = 60/67 (89.55%), Query Frame = -1
Query:  229 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDK 429
            MIIPVRCFTCGK++GNKW+ YL LLQA+Y EGDALDALGL RYCCRRML+ HVDLIEKLLNY  L+K
Sbjct:    1 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLLNYAPLEK 67          
BLAST of CV712552 vs. ExPASy Swiss-Prot
Match: RPAB5_HUMAN (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Homo sapiens GN=POLR2L PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.105e-27
Identity = 54/67 (80.60%), Postives = 60/67 (89.55%), Query Frame = -1
Query:  229 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDK 429
            MIIPVRCFTCGK++GNKW+ YL LLQA+Y EGDALDALGL RYCCRRML+ HVDLIEKLLNY  L+K
Sbjct:    1 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLLNYAPLEK 67          
BLAST of CV712552 vs. ExPASy Swiss-Prot
Match: RPAB5_DROME (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Drosophila melanogaster GN=Rpb10 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.105e-27
Identity = 55/67 (82.09%), Postives = 61/67 (91.04%), Query Frame = -1
Query:  229 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDK 429
            MIIP+RCFTCGKVIGNKW++YL LLQA+Y EGDALDALGL RYCCRRML+ HVDLIEKLLNY  L+K
Sbjct:    1 MIIPIRCFTCGKVIGNKWESYLGLLQAEYTEGDALDALGLKRYCCRRMLLGHVDLIEKLLNYAPLEK 67          
BLAST of CV712552 vs. ExPASy Swiss-Prot
Match: RPAB5_CHILA (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Chinchilla lanigera GN=POLR2L PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.105e-27
Identity = 54/67 (80.60%), Postives = 60/67 (89.55%), Query Frame = -1
Query:  229 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDK 429
            MIIPVRCFTCGK++GNKW+ YL LLQA+Y EGDALDALGL RYCCRRML+ HVDLIEKLLNY  L+K
Sbjct:    1 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLLNYAPLEK 67          
BLAST of CV712552 vs. ExPASy Swiss-Prot
Match: RPAB5_BOVIN (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Bos taurus GN=POLR2L PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.105e-27
Identity = 54/67 (80.60%), Postives = 60/67 (89.55%), Query Frame = -1
Query:  229 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDK 429
            MIIPVRCFTCGK++GNKW+ YL LLQA+Y EGDALDALGL RYCCRRML+ HVDLIEKLLNY  L+K
Sbjct:    1 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLLNYAPLEK 67          
BLAST of CV712552 vs. ExPASy Swiss-Prot
Match: RPAB5_DICDI (DNA-directed RNA polymerases I, II, and III subunit rpabc5 OS=Dictyostelium discoideum GN=polr2l PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 4.690e-27
Identity = 56/65 (86.15%), Postives = 57/65 (87.69%), Query Frame = -1
Query:  235 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTL 429
            MIIPVRCFTCGKVIGNKWD YL LLQ DY EGDALDAL L RYCCRRML+THVDLIEKLLNY  L
Sbjct:    1 MIIPVRCFTCGKVIGNKWDAYLSLLQIDYTEGDALDALCLKRYCCRRMLLTHVDLIEKLLNYTPL 65          
BLAST of CV712552 vs. ExPASy Swiss-Prot
Match: RPAB5_CAEEL (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Caenorhabditis elegans GN=Y37E3.3 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 6.125e-27
Identity = 53/67 (79.10%), Postives = 61/67 (91.04%), Query Frame = -1
Query:  229 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDK 429
            MIIP+RCFTCGKVIG+KW+TYL  LQ++Y EGDALDALGL RYCCRRML+ HVDLIEKLLNY+ L+K
Sbjct:    1 MIIPIRCFTCGKVIGDKWETYLGFLQSEYSEGDALDALGLRRYCCRRMLLAHVDLIEKLLNYHPLEK 67          
BLAST of CV712552 vs. ExPASy Swiss-Prot
Match: RPAB5_SCHPO (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Schizosaccharomyces pombe GN=rpb10 PE=1 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 2.574e-25
Identity = 52/67 (77.61%), Postives = 58/67 (86.57%), Query Frame = -1
Query:  229 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDK 429
            MIIP+RCF+CGKVIG+KWDTYL LLQ D  EG+ALD LGL RYCCRRM++THVDLIEKLL YN L K
Sbjct:    1 MIIPIRCFSCGKVIGDKWDTYLTLLQEDNTEGEALDKLGLQRYCCRRMILTHVDLIEKLLCYNPLSK 67          
The following BLAST results are available for this feature:
BLAST of CV712552 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
RPAB5_ARATH1.505e-3392.75DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB5_BRANA5.720e-3391.55DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB5_MOUSE2.105e-2780.60DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB5_HUMAN2.105e-2780.60DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB5_DROME2.105e-2782.09DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB5_CHILA2.105e-2780.60DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB5_BOVIN2.105e-2780.60DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB5_DICDI4.690e-2786.15DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB5_CAEEL6.125e-2779.10DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB5_SCHPO2.574e-2577.61DNA-directed RNA polymerases I, II, and III subuni... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001I22_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001I22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712552 ID=CV712552; Name=CV712552; organism=Citrus sinensis; type=EST; length=471bp
ATTACATATAACAAACTATGGACACACACACACACACCCAAAATTATCCA
TGACTTGGGTAAGAGTTAAGTCTTTAATGCATTTGATGCCTAATATTCCT
CAATACTAAACATAACGGCAAGTGCTCACACAGACATTACAATATGGAAG
TTGACATGCAGATGCAACAGGCAACATGAACAAAACCAACTTCAGGTCCA
TCCATGGGCTTCCTCAGCTGGTGTCAGACTTATCCAATGTGTTGTAGTTA
AGAAGCTTTTCAATGAGGTCAACGTGAGTCATAAGCATTCGCCTACAGCA
ATAGCGAACCAACCCCAAGGCATCAAGTGCGTCTCCTTCAGGATAATCAG
CCTGTAGAAGATCAAGATAGGTGTCCCATTTGTTTCCGATGACCTTGCCG
CAAGTGAAGCAACGAACTGGGATTATCATCTTCCTTGAGTCTTACGCTCG
AGTCGCCTCTTTCTCCCTCCT
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