CV712550

Overview
NameCV712550
Unique NameCV712550
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length846
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2930 contig Csv1_Contig2930:177..1022. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRFC_SPIOL (Ribosome-recycling factor, chloroplastic OS=Spinacia oleracea GN=RRF PE=1 SV=1)

HSP 1 Score: 294.278 bits (752), Expect = 5.768e-79
Identity = 154/219 (70.32%), Postives = 183/219 (83.56%), Query Frame = -3
Query:  170 AANYSRL----VKLSNKPIVVRQLAHKRNGVVRCATXXXXXXXXXXXXKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 814
            +ANY R+     K S K +VV+QL + R G  RCAT             + K RME+TI+ +R+NFNSVRT R++P MLD+IEVEYYG+PVSLKSIAQI+TPD+SSLLI PYDKSSLK+IEKAIV+S LG++PNNDGEVIRL+LP LTS+RRKEL+KVV+K AEEGKVAVRNIRRDALK+YEKL+KEKKLSEDNVKDLS+DLQKLTDEYMKK++SIYKQ
Sbjct:   46 SANYVRMDCGVKKFSGKAVVVKQLQN-RAGTFRCATMEEVEAEKSLIETNTKQRMEKTIETIRSNFNSVRTNRASPTMLDRIEVEYYGTPVSLKSIAQISTPDASSLLISPYDKSSLKAIEKAIVTSQLGVSPNNDGEVIRLSLPPLTSDRRKELAKVVSKLAEEGKVAVRNIRRDALKSYEKLEKEKKLSEDNVKDLSADLQKLTDEYMKKVESIYKQ 263          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRFC_ARATH (Ribosome-recycling factor, chloroplastic OS=Arabidopsis thaliana GN=RRF PE=1 SV=2)

HSP 1 Score: 292.352 bits (747), Expect = 2.192e-78
Identity = 152/208 (73.08%), Postives = 178/208 (85.58%), Query Frame = -3
Query:  170 VKLSNKPIVVRQLAHKRNGVVRCATXXXXXXXXXXXXKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 793
            V LS  P+V R L  ++  V+R AT             DVK++ME+TI+ +RT+FNS+RTGRSN AMLDKIEVEYYGSPVSLKSIAQI+TPD SSLL+QPYDKSSLK+IEKAIV+SDLG+TPNNDG+VIRL+LP LTS+RRKELSKVVAKQ+EEGKVA+RNIRRDALK+Y+KL+KEKKLSEDNVKDLSSDLQKL D YMKKI+ +YKQ
Sbjct:   62 VNLSGGPVVKRSL--QKRLVIRSATIEEIEAEKSAIETDVKSKMEKTIETLRTSFNSIRTGRSNAAMLDKIEVEYYGSPVSLKSIAQISTPDGSSLLLQPYDKSSLKAIEKAIVNSDLGVTPNNDGDVIRLSLPPLTSDRRKELSKVVAKQSEEGKVALRNIRRDALKSYDKLEKEKKLSEDNVKDLSSDLQKLIDVYMKKIEELYKQ 267          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRFC_DAUCA (Ribosome-recycling factor, chloroplastic (Fragment) OS=Daucus carota GN=RRF PE=2 SV=2)

HSP 1 Score: 289.271 bits (739), Expect = 1.856e-77
Identity = 149/219 (68.04%), Postives = 182/219 (83.11%), Query Frame = -3
Query:  170 AANYSRLV----KLSNKPIVVRQLAHKRNGVVRCATXXXXXXXXXXXXKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 814
            AANY ++     K + K +V+ Q   KR G ++CAT            K VK RME+TI+ V+ +FNS+RT RSNP MLDKI+VEYYG+P SLKSIAQI+TPDSSSLL+ PYDKSSLK IEKAIV+SDLG+TPNNDG+VIRL++PQLT++RRKELSK+VAKQAEEGKVA+RNIRRDA+K+Y+KL+KEKKLSEDNVKDLSSDLQK+ DEY+KK+DSI+KQ
Sbjct:    4 AANYVKIKVGTGKFARKTVVLSQ---KRTGTLKCATMEEIEAEKSLIEKSVKERMEKTIENVKASFNSIRTXRSNPDMLDKIKVEYYGTPTSLKSIAQISTPDSSSLLVNPYDKSSLKDIEKAIVNSDLGITPNNDGDVIRLSIPQLTADRRKELSKIVAKQAEEGKVALRNIRRDAIKSYDKLEKEKKLSEDNVKDLSSDLQKVIDEYIKKVDSIFKQ 219          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRFC_ORYSJ (Ribosome-recycling factor, chloroplastic OS=Oryza sativa subsp. japonica GN=Os07g0570700 PE=2 SV=2)

HSP 1 Score: 269.24 bits (687), Expect = 1.987e-71
Identity = 135/208 (64.90%), Postives = 173/208 (83.17%), Query Frame = -3
Query:  170 VKLSNKPIVVRQLAHKRNGVVRCATXXXXXXXXXXXXKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 793
            ++  ++P++++     +  V+R AT               + RME+ I+ V+ NFN+VRTGR+NPAMLD+IEVEYYG+PV+LKSIAQINTPD++SLLIQPYDKSSLK IEK IV+++LG+TP+NDGEVIR+T+P LTS+RRKEL+K VAK AEEGKVA+RNIRRDA+KAY+KL+KEKKLSEDNVKDLS+DLQK+TDEYMKKI++I KQ
Sbjct:   53 MRFYSRPLILQN--SDKRAVLRHATIEEIEAEKSVIEDQARERMEKAIETVQNNFNTVRTGRANPAMLDRIEVEYYGTPVNLKSIAQINTPDATSLLIQPYDKSSLKLIEKTIVAANLGVTPSNDGEVIRVTVPPLTSDRRKELAKTVAKLAEEGKVAIRNIRRDAIKAYDKLEKEKKLSEDNVKDLSADLQKVTDEYMKKIEAIQKQ 258          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRFC_ORYSI (Ribosome-recycling factor, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_26546 PE=1 SV=2)

HSP 1 Score: 269.24 bits (687), Expect = 1.987e-71
Identity = 135/208 (64.90%), Postives = 173/208 (83.17%), Query Frame = -3
Query:  170 VKLSNKPIVVRQLAHKRNGVVRCATXXXXXXXXXXXXKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 793
            ++  ++P++++     +  V+R AT               + RME+ I+ V+ NFN+VRTGR+NPAMLD+IEVEYYG+PV+LKSIAQINTPD++SLLIQPYDKSSLK IEK IV+++LG+TP+NDGEVIR+T+P LTS+RRKEL+K VAK AEEGKVA+RNIRRDA+KAY+KL+KEKKLSEDNVKDLS+DLQK+TDEYMKKI++I KQ
Sbjct:   53 MRFYSRPLILQN--SDKRAVLRHATIEEIEAEKSVIEDQARERMEKAIETVQNNFNTVRTGRANPAMLDRIEVEYYGTPVNLKSIAQINTPDATSLLIQPYDKSSLKLIEKTIVAANLGVTPSNDGEVIRVTVPPLTSDRRKELAKTVAKLAEEGKVAIRNIRRDAIKAYDKLEKEKKLSEDNVKDLSADLQKVTDEYMKKIEAIQKQ 258          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_SYNJB (Ribosome-recycling factor OS=Synechococcus sp. GN=frr PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 4.602e-52
Identity = 96/167 (57.49%), Postives = 133/167 (79.64%), Query Frame = -3
Query:  179 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 679
            +++  M + +   + +FN+VRTGR+N ++LD+I+VEYYG P  LK++A + TPDSS+LLIQP+D S+L +IE+AIV+SDLG+TP+NDG+V+RLT+P LT ERRKELSK VAK AEEG+V++RNIRRD + +  K +K  +LSED  K L  D+QKLTD Y+KKID +
Sbjct:    5 EIEELMNKAVQATQRSFNTVRTGRANSSLLDRIQVEYYGVPTPLKALASLTTPDSSTLLIQPFDPSTLAAIERAIVASDLGLTPSNDGKVVRLTIPPLTEERRKELSKQVAKLAEEGRVSIRNIRRDGIDSVRKREKNGELSEDESKSLQDDIQKLTDRYIKKIDEL 171          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_ANASP (Ribosome-recycling factor OS=Anabaena sp. (strain PCC 7120) GN=frr PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.134e-50
Identity = 93/167 (55.69%), Postives = 132/167 (79.04%), Query Frame = -3
Query:  179 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 679
            + +++M+ T++  +  FN++RTGR+N ++LDK+ V+YYGSP  LKS+A I+TPD++++LIQPYDKSSL  +EKAI  SD+G+TP+NDG VIRL +P LTS+RRKEL K+ AK AEEG+VA+RNIRRDA+ +  KL+K  ++SED  KD    LQKLT++Y  +ID +
Sbjct:    5 EAESKMQHTVEATQRAFNTIRTGRANASLLDKVLVDYYGSPTPLKSLANISTPDATTILIQPYDKSSLNIVEKAISLSDVGLTPSNDGAVIRLNIPPLTSDRRKELVKIAAKYAEEGRVAIRNIRRDAVDSIRKLEKNAEVSEDEAKDQQDKLQKLTNKYTARIDEL 171          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_THEEB (Ribosome-recycling factor OS=Thermosynechococcus elongatus (strain BP-1) GN=frr PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 3.298e-50
Identity = 94/167 (56.29%), Postives = 133/167 (79.64%), Query Frame = -3
Query:  179 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 679
            DV+ RM+++++  + +FNS+RTGR+N A+LD++ V+YYG+   L+S+A ++TPD++++LIQPYD+S+L SIEKAI  SDLG+TPNNDG  +RL +P LT+ERRKEL K  AK AE GKVA+RNIRRDA+   +K  K  +L+ED VKDL   +QKLTD+Y+ KID++
Sbjct:    5 DVEERMQKSVEATQHDFNSIRTGRANAALLDRVMVDYYGTETPLRSLANVSTPDATTILIQPYDRSTLASIEKAIQLSDLGLTPNNDGSSVRLNIPPLTTERRKELVKTAAKIAEGGKVAIRNIRRDAIDHIKKAGKAGELTEDEVKDLQEKVQKLTDKYIGKIDAL 171          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_SYNP6 (Ribosome-recycling factor OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=frr PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 7.348e-50
Identity = 90/167 (53.89%), Postives = 134/167 (80.24%), Query Frame = -3
Query:  179 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 679
            DV++ M+++++    +FN++RTGR+N ++LDKI V+YYGS   LKS+A I+TPD+S+L IQP+D+SS+ +IEKAI  SD+G+TPNNDG++IRL +P LTS+RRKEL K+ AK AEEGKVA+RN+RRDA+ +  KL+K  ++SED+ +D    +QKLTD++  K++ +
Sbjct:    5 DVESTMQKSVEATLRSFNTIRTGRANASLLDKIVVDYYGSETPLKSLASISTPDASTLQIQPFDRSSMGAIEKAISLSDIGLTPNNDGQIIRLNIPPLTSDRRKELVKLAAKYAEEGKVAIRNVRRDAIDSIRKLEKSGEISEDDARDQQDQVQKLTDKFSAKVEQL 171          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_SYNE7 (Ribosome-recycling factor OS=Synechococcus elongatus (strain PCC 7942) GN=frr PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 7.348e-50
Identity = 90/167 (53.89%), Postives = 134/167 (80.24%), Query Frame = -3
Query:  179 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 679
            DV++ M+++++    +FN++RTGR+N ++LDKI V+YYGS   LKS+A I+TPD+S+L IQP+D+SS+ +IEKAI  SD+G+TPNNDG++IRL +P LTS+RRKEL K+ AK AEEGKVA+RN+RRDA+ +  KL+K  ++SED+ +D    +QKLTD++  K++ +
Sbjct:    5 DVESTMQKSVEATLRSFNTIRTGRANASLLDKIVVDYYGSETPLKSLASISTPDASTLQIQPFDRSSMGAIEKAISLSDIGLTPNNDGQIIRLNIPPLTSDRRKELVKLAAKYAEEGKVAIRNVRRDAIDSIRKLEKSGEISEDDARDQQDQVQKLTDKFSAKVEQL 171          
The following BLAST results are available for this feature:
BLAST of CV712550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRFC_SPIOL5.768e-7970.32Ribosome-recycling factor, chloroplastic OS=Spinac... [more]
RRFC_ARATH2.192e-7873.08Ribosome-recycling factor, chloroplastic OS=Arabid... [more]
RRFC_DAUCA1.856e-7768.04Ribosome-recycling factor, chloroplastic (Fragment... [more]
RRFC_ORYSJ1.987e-7164.90Ribosome-recycling factor, chloroplastic OS=Oryza ... [more]
RRFC_ORYSI1.987e-7164.90Ribosome-recycling factor, chloroplastic OS=Oryza ... [more]
RRF_SYNJB4.602e-5257.49Ribosome-recycling factor OS=Synechococcus sp. GN=... [more]
RRF_ANASP1.134e-5055.69Ribosome-recycling factor OS=Anabaena sp. (strain ... [more]
RRF_THEEB3.298e-5056.29Ribosome-recycling factor OS=Thermosynechococcus e... [more]
RRF_SYNP67.348e-5053.89Ribosome-recycling factor OS=Synechococcus sp. (st... [more]
RRF_SYNE77.348e-5053.89Ribosome-recycling factor OS=Synechococcus elongat... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001I21_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001I21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712550 ID=CV712550; Name=CV712550; organism=Citrus sinensis; type=EST; length=846bp
CCCCCTTTTTTTCTAACAAAATATCCACCCGGTGTCTCCCATTAGTATCA
AAAAATGCCATTCTATGGGCAAACCAAAAAATAAAGAGTGCATTCTGAGA
TTCACTAGAGAGCTCACCATTACATTTGTGTGTAAACAATCATTAAACCT
TCAACAACTCCTTCTCTTTCTGTTTGTAGATGCTATCAATCTTCTTCATA
TACTCATCTGTTAGTTTCTGTAAATCACTTGACAAGTCCTTCACATTGTC
TTCAGAGAGCTTCTTCTCCTTCTGAAGTTTTTCATAAGCTTTTAACGCAT
CTCTTCTTATATTCCTAACTGCCACCTTCCCTTCTTCAGCCTGTTTGGCC
ACAACCTTTGACAGTTCCTTCCTCCTTTCGGATGTCAATTGAGGAAGGGT
TAACCGTATGACTTCACCATCATTGTTTGGGGTCATGCCAAGATCAGAGC
TTACTATGGCCTTCTCTATAGACTTTAAGCTGGATTTGTCATATGGTTGA
ATCAATAGAGAACTTGAATCAGGGGTATTGATTTGAGCTATGCTCTTCAA
ACTTACTGGGCTTCCATAGTATTCCACCTCAATCTTATCTAGCATAGCTG
GATTCGATCTTCCTGTCCTCACGGAATTGAAATTGGTTCGGACCATATCG
ATAGTCCTTTCCATCCTAGCTTTAACATCCTTCTCAATGGAAGATTTTTC
CGCTTCAATTTCTTCAATAGTTGCACACCTCACAACTCCATTTCTCTTGT
GTGCCAGTTGTCTTACAACGATAGGTTTGTTGGATAATTTCACAAGTCTA
GAGTAGTTTGCAGCTGAGCTCTACTGGCGCACACTAACGCTGCTAG
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