CV712537

Overview
NameCV712537
Unique NameCV712537
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length480
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV712537_ssr54 microsatellite CV712537_ssr54:54..65. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3493 contig Csv1_Contig3493:111..590. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712537 vs. ExPASy Swiss-Prot
Match: SMT3_ARATH (Ubiquitin-like protein SMT3 OS=Arabidopsis thaliana GN=SMT3 PE=1 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 2.410e-42
Identity = 83/92 (90.22%), Postives = 87/92 (94.57%), Query Frame = 3
Query:   72 QEEDKKPVDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGALG 347
            QEEDKKP D  AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSV++NSIAFLFDGRRLR EQTPDEL+MEDGDEIDAMLHQTGG+ G
Sbjct:    5 QEEDKKPGDGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNSIAFLFDGRRLRAEQTPDELDMEDGDEIDAMLHQTGGSGG 96          
BLAST of CV712537 vs. ExPASy Swiss-Prot
Match: SMT3_ORYSJ (Ubiquitin-like protein SMT3 OS=Oryza sativa subsp. japonica GN=SMT3 PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.727e-40
Identity = 82/93 (88.17%), Postives = 85/93 (91.40%), Query Frame = 3
Query:   75 EEDKKPVDQS---AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGAL 344
            EEDKKP       AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSV++N+IAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG L
Sbjct:    6 EEDKKPAGGEGGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNAIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGCL 98          
BLAST of CV712537 vs. ExPASy Swiss-Prot
Match: PMT3_SCHPO (Ubiquitin-like protein pmt3/smt3 OS=Schizosaccharomyces pombe GN=pmt3 PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 1.918e-23
Identity = 51/88 (57.95%), Postives = 66/88 (75.00%), Query Frame = 3
Query:   75 EEDKKPVDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 338
            ++D KP   + HINLKV GQD NEVFF+IK++T+  KLM  YC RQ   +NS+ FL DG R+R +QTP EL+MEDGD+I+A+L Q GG
Sbjct:   26 QQDVKP--STEHINLKVVGQDNNEVFFKIKKTTEFSKLMKIYCARQGKSMNSLRFLVDGERIRPDQTPAELDMEDGDQIEAVLEQLGG 111          
BLAST of CV712537 vs. ExPASy Swiss-Prot
Match: SUMO3_MOUSE (Small ubiquitin-related modifier 3 OS=Mus musculus GN=Sumo3 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 3.743e-19
Identity = 48/95 (50.53%), Postives = 62/95 (65.26%), Query Frame = 3
Query:   72 QEEDKKPVD-QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGALGSG 353
            +E+ K+ V  ++ HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG+   G
Sbjct:    3 EEKPKEGVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGSASRG 97          
BLAST of CV712537 vs. ExPASy Swiss-Prot
Match: SUMO3_XENTR (Small ubiquitin-related modifier 3 OS=Xenopus tropicalis GN=sumo3 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 4.889e-19
Identity = 48/90 (53.33%), Postives = 60/90 (66.67%), Query Frame = 3
Query:   72 QEEDKKPVD-QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 338
            +E+ K+ V  ++ HINLKV GQDG+ V F+IKR T L KLM AYCDRQ + +  I F FDG+ +    TP +LEMED D ID    QTGG
Sbjct:    3 EEKPKEGVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCDRQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 92          
BLAST of CV712537 vs. ExPASy Swiss-Prot
Match: SUMO3_XENLA (Small ubiquitin-related modifier 3 OS=Xenopus laevis GN=sumo3 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 4.889e-19
Identity = 48/90 (53.33%), Postives = 60/90 (66.67%), Query Frame = 3
Query:   72 QEEDKKPVD-QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 338
            +E+ K+ V  ++ HINLKV GQDG+ V F+IKR T L KLM AYCDRQ + +  I F FDG+ +    TP +LEMED D ID    QTGG
Sbjct:    3 EEKPKEGVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCDRQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 92          
BLAST of CV712537 vs. ExPASy Swiss-Prot
Match: SUMO3_BOVIN (Small ubiquitin-related modifier 3 OS=Bos taurus GN=SUMO3 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 4.889e-19
Identity = 51/101 (50.50%), Postives = 65/101 (64.36%), Query Frame = 3
Query:   72 QEEDKKPVD-QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGA------LGSG 353
            +E+ K+ V  ++ HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG+      LGSG
Sbjct:    3 EEKPKEGVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGSRVASCLLGSG 103          
BLAST of CV712537 vs. ExPASy Swiss-Prot
Match: SUMO2_RAT (Small ubiquitin-related modifier 2 OS=Rattus norvegicus GN=Sumo2 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.089e-18
Identity = 47/91 (51.65%), Postives = 58/91 (63.74%), Query Frame = 3
Query:   81 DKKP-----VDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 338
            D+KP      + + HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG
Sbjct:    3 DEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93          
BLAST of CV712537 vs. ExPASy Swiss-Prot
Match: SUMO2_PIG (Small ubiquitin-related modifier 2 OS=Sus scrofa GN=SUMO2 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.089e-18
Identity = 47/91 (51.65%), Postives = 58/91 (63.74%), Query Frame = 3
Query:   81 DKKP-----VDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 338
            D+KP      + + HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG
Sbjct:    3 DEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93          
BLAST of CV712537 vs. ExPASy Swiss-Prot
Match: SUMO2_MOUSE (Small ubiquitin-related modifier 2 OS=Mus musculus GN=Sumo2 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.089e-18
Identity = 47/91 (51.65%), Postives = 58/91 (63.74%), Query Frame = 3
Query:   81 DKKP-----VDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 338
            D+KP      + + HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG
Sbjct:    3 DEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93          
The following BLAST results are available for this feature:
BLAST of CV712537 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
SMT3_ARATH2.410e-4290.22Ubiquitin-like protein SMT3 OS=Arabidopsis thalian... [more]
SMT3_ORYSJ1.727e-4088.17Ubiquitin-like protein SMT3 OS=Oryza sativa subsp.... [more]
PMT3_SCHPO1.918e-2357.95Ubiquitin-like protein pmt3/smt3 OS=Schizosaccharo... [more]
SUMO3_MOUSE3.743e-1950.53Small ubiquitin-related modifier 3 OS=Mus musculus... [more]
SUMO3_XENTR4.889e-1953.33Small ubiquitin-related modifier 3 OS=Xenopus trop... [more]
SUMO3_XENLA4.889e-1953.33Small ubiquitin-related modifier 3 OS=Xenopus laev... [more]
SUMO3_BOVIN4.889e-1950.50Small ubiquitin-related modifier 3 OS=Bos taurus G... [more]
SUMO2_RAT1.089e-1851.65Small ubiquitin-related modifier 2 OS=Rattus norve... [more]
SUMO2_PIG1.089e-1851.65Small ubiquitin-related modifier 2 OS=Sus scrofa G... [more]
SUMO2_MOUSE1.089e-1851.65Small ubiquitin-related modifier 2 OS=Mus musculus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001I12_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001I12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712537 ID=CV712537; Name=CV712537; organism=Citrus sinensis; type=EST; length=480bp
AAAGAGAGGGTAAAATTCAATTCTAAGAACCTGTAAGGATGTCAGCGACC
GGTGGCGGCGGCGGCGGTGGTCAGGAGGAGGACAAGAAGCCCGTCGATCA
GTCGGCGCACATTAACCTCAAAGTCAAGGGCCAGGATGGCAATGAGGTGT
TTTTTAGAATTAAGCGAAGCACCCAGTTGAAAAAGCTCATGAATGCCTAC
TGTGATCGGCAGTCGGTGGAGTTAAACTCTATTGCTTTCTTGTTTGATGG
GCGGAGACTCCGAGGAGAGCAGACTCCAGATGAGCTTGAGATGGAGGATG
GAGATGAAATTGATGCAATGCTGCATCAGACTGGAGGTGCGCTTGGAAGC
GGTTAGCTGCAGTTTGAAATATTTTGAGCATCGCTGGCGGACTTGATGTT
TGAGTTTTTTAAATTAGCCTATATCTATGGAAATATTACTGTAAATGATG
ACTTGGATCTTATAATTAACTTGAATTTAA
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